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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidithiobacillia
Anticodon = TGA
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.20843 (1 seq.)
>C09100392
CP001219
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 23270 [CP001219]
1033890
1033800
-
Ser
TGA
[Ensembl]
¡û
Identical group No.28418 (1 seq.)
>W131231781
AUIS01000017
Acidithiobacillia
Thermithiobacillus tepidarius DSM 3134 [AUIS]
48088
48178
+
Ser
TGA
[ENA]
¡û
Identical group No.34479 (2 seq.)
>CL170500013
CP002573
Acidithiobacillia
Acidithiobacillus caldus SM-1 [CP002573]
2279820
2279511
-
Ser
TGA
[Ensembl]
¡û
>CL170500014
CP005986
Acidithiobacillia
Acidithiobacillus caldus ATCC 51756 [CP005986]
2125985
2125676
-
Ser
TGA
[Ensembl]
¡û
Identical group No.36113 (2 seq.)
>CL08000007
CP001132
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 53993 [CP001132]
1746520
1746209
-
Ser
TGA
[Ensembl]
¡û
>W1910831826
MXAV01000010
Acidithiobacillia
Acidithiobacillus marinus SH [MXAV]
28467
28556
+
Ser
TGA
[ENA]
¡û
Identical group No.41686 (1 seq.)
>W11300867
AEFB01001108
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
455
366
-
Ser
TGA
[ENA]
¡û
Identical group No.49444 (6 seq.)
>W1711190471
LWSA01000320
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSA]
1693
1605
-
Ser
TGA
[ENA]
¡û
>W1711190517
LWSB01000089
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
3472
3560
+
Ser
TGA
[ENA]
¡û
>W1711190727
LWSD01000267
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
1020
1108
+
Ser
TGA
[ENA]
¡û
>W1711293136
LZYI01000014
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
13193
13105
-
Ser
TGA
[ENA]
¡û
>W141206742
AZMO01000001
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
132761
132849
+
Ser
TGA
[ENA]
¡û
>W141695571
JMEB01000106
Acidithiobacillia
Acidithiobacillus thiooxidans [JMEB]
20281
20193
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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