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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Metagenomic characterization of a wastewater treatment plant (SRP000180)
Anticodon = TCT
HIT:
15 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.280457 (44 seq.)
>W1711504428
MKUN01000053
Bacteroidota
Bacteroidetes bacterium 46-16 [MKUN]
182666
182742
+
Arg
TCT
[ENA]
¡û
>W1711504438
MKUO01000004
Bacteroidota
Bacteroidetes bacterium 43-93 [MKUO]
346880
346954
+
Arg
TCT
[ENA]
¡û
>W1711506208
MKWF01000010
Bacteroidota
Sphingobacteriales bacterium 40-81 [MKWF]
543676
543752
+
Arg
TCT
[ENA]
¡û
>W1711506269
MKWG01000027
Bacteroidota
Sphingobacteriales bacterium 44-15 [MKWG]
35104
35030
-
Arg
TCT
[ENA]
¡û
>W1712050050
NFUW01000002
Bacteroidota
Chitinophagaceae bacterium IBVUCB1 [NFUW]
894663
894589
-
Arg
TCT
[ENA]
¡û
>WENV180285842
OBID01752996
[OBID] metagenome; sludge
62
136
+
Arg
TCT
[ENA]
¢þ
>WENV181169619
OEIV010005528
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
3396
3470
+
Arg
TCT
[ENA]
¢þ
>WENV183092334
OLKZ01000184
[OLKZ] soil metagenome; soil
64
138
+
Arg
TCT
[ENA]
¢þ
>WENV183092924
OLLO01000348
[OLLO] soil metagenome; soil
4592
4518
-
Arg
TCT
[ENA]
¢þ
>WENV170009631
APMI01001041
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
60338
60412
+
Arg
TCT
[ENA]
¢þ
>WENV170552049
CXWJ01036045
[CXWJ] wastewater metagenome; activated sludge
752
826
+
Arg
TCT
[ENA]
¢þ
>WENV170680947
LFEF01037688
[LFEF] freshwater metagenome; waterbloom
230795
230869
+
Arg
TCT
[ENA]
¢þ
>WENV170981338
MWVT01069152
[MWVT] soil metagenome; TG5-1 sample; Antarctic (ecotone) soil
330
254
-
Arg
TCT
[ENA]
¢þ
>WENV170982606
MWVU01161430
[MWVU] soil metagenome; TG1-5 sample; Antarctic (ecotone) soil
274
348
+
Arg
TCT
[ENA]
¢þ
>WENV170984780
MWVW01000016
[MWVW] soil metagenome; MtG22-5 sample; Antarctic (ecotone) soil
3954
4028
+
Arg
TCT
[ENA]
¢þ
>WENV170984862
MWVW01000997
[MWVW] soil metagenome; MtG22-5 sample; Antarctic (ecotone) soil
5769
5695
-
Arg
TCT
[ENA]
¢þ
>WENV170984967
MWVW01006033
[MWVW] soil metagenome; MtG22-5 sample; Antarctic (ecotone) soil
648
574
-
Arg
TCT
[ENA]
¢þ
>WENV170984989
MWVW01008089
[MWVW] soil metagenome; MtG22-5 sample; Antarctic (ecotone) soil
75
1
-
Arg
TCT
[ENA]
¢þ
>WENV170985006
MWVW01009594
[MWVW] soil metagenome; MtG22-5 sample; Antarctic (ecotone) soil
1414
1337
-
Arg
TCT
[ENA]
¢þ
>WENV170985294
MWVW01058889
[MWVW] soil metagenome; MtG22-5 sample; Antarctic (ecotone) soil
68
144
+
Arg
TCT
[ENA]
¢þ
>WENV170985430
MWVW01100597
[MWVW] soil metagenome; MtG22-5 sample; Antarctic (ecotone) soil
124
198
+
Arg
TCT
[ENA]
¢þ
>WENV170985833
MWVX01003966
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
2194
2120
-
Arg
TCT
[ENA]
¢þ
>WENV170985987
MWVX01010233
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
1109
1183
+
Arg
TCT
[ENA]
¢þ
>WENV170986315
MWVX01029955
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
1497
1421
-
Arg
TCT
[ENA]
¢þ
>WENV170986426
MWVX01039242
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
743
817
+
Arg
TCT
[ENA]
¢þ
>WENV170986627
MWVX01058337
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
554
478
-
Arg
TCT
[ENA]
¢þ
>WENV170986868
MWVX01089760
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
279
355
+
Arg
TCT
[ENA]
¢þ
>WENV170987008
MWVX01109232
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
300
374
+
Arg
TCT
[ENA]
¢þ
>WENV170987759
MWVX01266079
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
203
279
+
Arg
TCT
[ENA]
¢þ
>WENV170987948
MWVX01318638
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
28
102
+
Arg
TCT
[ENA]
¢þ
>WENV170988644
MWVX01566321
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
309
233
-
Arg
TCT
[ENA]
¢þ
>WENV170988647
MWVX01566631
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
229
303
+
Arg
TCT
[ENA]
¢þ
>WENV170990099
MWVZ01215466
[MWVZ] soil metagenome; MS6-5 sample; Antarctic (ecotone) soil
269
343
+
Arg
TCT
[ENA]
¢þ
>WENV170995321
MWWF01000801
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
4623
4700
+
Arg
TCT
[ENA]
¢þ
>WENV170995482
MWWF01012938
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
151
228
+
Arg
TCT
[ENA]
¢þ
>WENV170996126
MWWF01151461
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
148
72
-
Arg
TCT
[ENA]
¢þ
>WENV170996153
MWWF01161539
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
181
258
+
Arg
TCT
[ENA]
¢þ
>WENV170996676
MWWF01373283
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
144
220
+
Arg
TCT
[ENA]
¢þ
>WENV170996696
MWWF01377984
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
31
107
+
Arg
TCT
[ENA]
¢þ
>WENV170999421
MWWK01055094
[MWWK] soil metagenome; BG12-3 sample; Antarctic (ecotone) soil
360
286
-
Arg
TCT
[ENA]
¢þ
>SRA1002008
SRR001308.181822
Metagenomic characterization of a wastewater treatment plant (SRP000180)
62
136
+
Arg
TCT
[SRA]
>SRA1002298
SRR001308.358015
Metagenomic characterization of a wastewater treatment plant (SRP000180)
156
82
-
Arg
TCT
[SRA]
>W1810533340
QCZJ01000011
Bacteroidota
Terrimonas sp. NS-102 [QCZJ]
108196
108270
+
Arg
TCT
[ENA]
¡û
>W1810682135
QKTW01000022
Bacteroidota
Taibaiella soli R1-15 [QKTW]
391114
391188
+
Arg
TCT
[ENA]
¡û
Identical group No.297251 (8 seq.)
>WENV181222720
OFDC01000131
[OFDC] hot springs metagenome; Water
30170
30094
-
Arg
TCT
[ENA]
¢þ
>WENV181227044
OFDN01001198
[OFDN] hot springs metagenome; Water
3271
3195
-
Arg
TCT
[ENA]
¢þ
>WENV181416764
OGCL01141956
[OGCL] hot springs metagenome; Hot spring water
156
80
-
Arg
TCT
[ENA]
¢þ
>WENV170680752
LFEF01018154
[LFEF] freshwater metagenome; waterbloom
903
979
+
Arg
TCT
[ENA]
¢þ
>WENV170711081
LNFM01003468
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
30965
30889
-
Arg
TCT
[ENA]
¢þ
>WENV170711095
LNFM01003528
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
30574
30498
-
Arg
TCT
[ENA]
¢þ
>W1911696768
QMJY01000017
Alphaproteobacteria
Tabrizicola thermarum YIM 73036 [QMJY]
123444
123520
+
Arg
TCT
[ENA]
¡û
>SRA1002100
SRR001308.241439
Metagenomic characterization of a wastewater treatment plant (SRP000180)
191
267
+
Arg
TCT
[SRA]
Identical group No.312417 (3 seq.)
>WENV181372603
OFQX01000755
[OFQX] wastewater metagenome; WWTP Novara (Effluent)
8019
8095
+
Arg
TCT
[ENA]
¢þ
>WENV181375994
OFQZ01010906
[OFQZ] wastewater metagenome; Exp Tend NO 0WW
960
1036
+
Arg
TCT
[ENA]
¢þ
>SRA1002052
SRR001308.213635
Metagenomic characterization of a wastewater treatment plant (SRP000180)
144
68
-
Arg
TCT
[SRA]
Identical group No.320994 (3 seq.)
>WENV170639597
JFJP01005301
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
3711
3787
+
Arg
TCT
[ENA]
¢þ
>SRA1001697
SRR001308.2030
Metagenomic characterization of a wastewater treatment plant (SRP000180)
241
165
-
Arg
TCT
[SRA]
>SRA1001803
SRR001308.62023
Metagenomic characterization of a wastewater treatment plant (SRP000180)
241
165
-
Arg
TCT
[SRA]
Identical group No.321005 (1 seq.)
>SRA1001800
SRR001308.60424
Metagenomic characterization of a wastewater treatment plant (SRP000180)
86
162
+
Arg
TCT
[SRA]
Identical group No.321006 (2 seq.)
>W141242925
CAIZ01000155
Actinomycetota
Phycicoccus elongatus Lp2 [CAIZ]
11208
11134
-
Arg
TCT
[ENA]
¡û
>SRA1001807
SRR001308.65329
Metagenomic characterization of a wastewater treatment plant (SRP000180)
218
144
-
Arg
TCT
[SRA]
Identical group No.321015 (2 seq.)
>WENV170551921
CXWJ01030181
[CXWJ] wastewater metagenome; activated sludge
1555
1479
-
Arg
TCT
[ENA]
¢þ
>SRA1001901
SRR001308.116691
Metagenomic characterization of a wastewater treatment plant (SRP000180)
79
3
-
Arg
TCT
[SRA]
Identical group No.321054 (1 seq.)
>SRA1002271
SRR001308.338934
Metagenomic characterization of a wastewater treatment plant (SRP000180)
58
135
+
Arg
TCT
[SRA]
Identical group No.321057 (1 seq.)
>SRA1002312
SRR001308.369940
Metagenomic characterization of a wastewater treatment plant (SRP000180)
166
90
-
Arg
TCT
[SRA]
Identical group No.321058 (1 seq.)
>SRA1002313
SRR001308.370081
Metagenomic characterization of a wastewater treatment plant (SRP000180)
180
106
-
Arg
TCT
[SRA]
Identical group No.486900 (3 seq.)
>W1711613239
MOYA01000001
Unclassified
Candidatus Obscuribacter phosphatis [MOYA]
2543265
2543339
+
Arg
TCT
[ENA]
¡û
>WENV170578074
FSSH01011228
[FSSH] freshwater metagenome; drinking water
204
130
-
Arg
TCT
[ENA]
¢þ
>SRA1001710
SRR001308.9610
Metagenomic characterization of a wastewater treatment plant (SRP000180)
166
92
-
Arg
TCT
[SRA]
Identical group No.506823 (2 seq.)
>WENV181172651
OEIV010885564
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
104
30
-
Arg
TCT
[ENA]
¢þ
>SRA1001801
SRR001308.61243
Metagenomic characterization of a wastewater treatment plant (SRP000180)
199
125
-
Arg
TCT
[SRA]
Identical group No.506826 (1 seq.)
>SRA1001823
SRR001308.74386
Metagenomic characterization of a wastewater treatment plant (SRP000180)
129
202
+
Arg
TCT
[SRA]
Identical group No.506862 (1 seq.)
>SRA1002186
SRR001308.294441
Metagenomic characterization of a wastewater treatment plant (SRP000180)
237
163
-
Arg
TCT
[SRA]
Identical group No.685921 (1 seq.)
>SRA1001816
SRR001308.68956
Metagenomic characterization of a wastewater treatment plant (SRP000180)
192
118
-
Arg
TCT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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