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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Nitrososphaerota
Anticodon = GTA
HIT:
14 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.338252 (3 seq.)
>A17A000957
CP003842
Nitrososphaerota
Candidatus Nitrosopumilus koreensis AR1 [CP003842]
470492
470366
-
Tyr
GTA
-
¡û
>A17A001324
CP010868
Nitrososphaerota
Nitrosopumilus piranensis D3C [CP010868]
1387284
1387410
+
Tyr
GTA
-
¡û
>A17A001352
CP011070
Nitrososphaerota
Nitrosopumilus adriaticus NF5 [CP011070]
1333645
1333771
+
Tyr
GTA
-
¡û
Identical group No.338262 (4 seq.)
>A179000404
CP003842
Nitrososphaerota
Candidatus Nitrosopumilus koreensis AR1 [CP003842]
470492
470366
-
Tyr
GTA
-
¡û
>A179000563
CP010868
Nitrososphaerota
Nitrosopumilus piranensis D3C [CP010868]
1387284
1387410
+
Tyr
GTA
-
¡û
>A179000586
CP011070
Nitrososphaerota
Nitrosopumilus adriaticus NF5 [CP011070]
1333645
1333771
+
Tyr
GTA
-
¡û
>At0066
DP000238
Nitrososphaerota
Cenarchaeum symbiosum [DP000238]
1207261
1207383
+
Tyr
GTA
[Ensembl]
¡û
Identical group No.391904 (1 seq.)
>A17A000962
CP003843
Nitrososphaerota
Candidatus Nitrosopumilus sediminis AR2 [CP003843]
444243
444117
-
Tyr
GTA
-
¡û
Identical group No.391925 (1 seq.)
>A179000408
CP003843
Nitrososphaerota
Candidatus Nitrosopumilus sediminis AR2 [CP003843]
444243
444117
-
Tyr
GTA
-
¡û
Identical group No.399307 (1 seq.)
>A17A001824
LN890280
Nitrososphaerota
Candidatus Nitrosotalea devanaterra [LN890280]
460702
460579
-
Tyr
GTA
-
¡û
Identical group No.399315 (1 seq.)
>A179000723
LN890280
Nitrososphaerota
Candidatus Nitrosotalea devanaterra [LN890280]
460702
460579
-
Tyr
GTA
-
¡û
Identical group No.415938 (1 seq.)
>A17A000500
CP002408
Nitrososphaerota
Candidatus Nitrososphaera gargensis Ga9.2 [CP002408]
117545
117650
+
Tyr
GTA
-
¡û
Identical group No.415940 (1 seq.)
>A17A001116
CP007026
Nitrososphaerota
Candidatus Nitrosopelagicus brevis CN25 [CP007026]
322535
322413
-
Tyr
GTA
-
¡û
Identical group No.415949 (1 seq.)
>A179000467
CP007026
Nitrososphaerota
Candidatus Nitrosopelagicus brevis CN25 [CP007026]
322535
322413
-
Tyr
GTA
-
¡û
Identical group No.429438 (1 seq.)
>A17A001684
CP021324
Nitrososphaerota
Candidatus Nitrosomarinus catalina SPOT01 [CP021324]
908444
908570
+
Tyr
GTA
-
¡û
Identical group No.429440 (1 seq.)
>A179000693
CP021324
Nitrososphaerota
Candidatus Nitrosomarinus catalina SPOT01 [CP021324]
908444
908570
+
Tyr
GTA
-
¡û
Identical group No.440191 (1 seq.)
>A178000558
CP011097
Nitrososphaerota
Candidatus Nitrosotenuis cloacae SAT1 [CP011097]
1140126
1140246
+
Tyr
GTA
-
¡û
Identical group No.446342 (1 seq.)
>A17A000050
CP000866
Nitrososphaerota
Nitrosopumilus maritimus SCM1 [CP000866]
470128
470002
-
Tyr
GTA
-
¡û
Identical group No.446353 (1 seq.)
>A179000021
CP000866
Nitrososphaerota
Nitrosopumilus maritimus SCM1 [CP000866]
470128
470002
-
Tyr
GTA
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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