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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Solar Salterns, microbial fraction from medium salinity saltern in San Diego, CA (SRP000147)
Anticodon = CTC
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.247424 (7 seq.)
>ENV08001178
ABMR01015205
saltern metagenome; microbial fraction from medium salinity saltern in San Diego, CA
91
17
-
Glu
CTC
[ENA]
¡û
>ENV08001842
ABOG01025749
saltern metagenome; microbial fraction from medium salinity saltern in San Diego, CA
33
107
+
Glu
CTC
[ENA]
¡û
>ENV08001862
ABOG01045449
saltern metagenome; microbial fraction from medium salinity saltern in San Diego, CA
89
15
-
Glu
CTC
[ENA]
¡û
>WENV170679538
LFCJ01000015
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
84367
84441
+
Glu
CTC
[ENA]
¢þ
>WENV170680111
LFCJ01004179
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
389
315
-
Glu
CTC
[ENA]
¢þ
>WENV170704137
LKMJ01023495
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
77
3
-
Glu
CTC
[ENA]
¢þ
>SRA1001243
SRR001057.13154
Solar Salterns, microbial fraction from medium salinity saltern in San Diego, CA (SRP000147)
91
17
-
Glu
CTC
[SRA]
Identical group No.685902 (2 seq.)
>ENV08001174
ABMR01004028
saltern metagenome; microbial fraction from medium salinity saltern in San Diego, CA
7
81
+
Glu
CTC
[ENA]
¡û
>SRA1001240
SRR001057.6458
Solar Salterns, microbial fraction from medium salinity saltern in San Diego, CA (SRP000147)
7
81
+
Glu
CTC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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