This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Synergistota
Anticodon = ACG
HIT:
17 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.279666 (15 seq.)
>WENV180096033
MTBK01104123
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
114
190
+
Arg
ACG
[ENA]
¢þ
>WENV181230474
OFEK01001116
[OFEK] activated sludge metagenome; Anaerobic digester
14067
14143
+
Arg
ACG
[ENA]
¢þ
>WENV183514096
OMKS01011869
[OMKS] sediment metagenome; hot spring sediment
682
758
+
Arg
ACG
[ENA]
¢þ
>WENV170678365
LDZT01014057
[LDZT] terrestrial metagenome; oil reservoir sample SB1
5286
5362
+
Arg
ACG
[ENA]
¢þ
>WENV170678624
LDZU01003411
[LDZU] terrestrial metagenome; oil reservoir sample SB2
2465
2389
-
Arg
ACG
[ENA]
¢þ
>WENV170718510
LSQX01079009
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
11289
11365
+
Arg
ACG
[ENA]
¢þ
>WENV170967221
MTKW01000525
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
37699
37775
+
Arg
ACG
[ENA]
¢þ
>WENV170971697
MTKX01009951
[MTKX] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
85639
85563
-
Arg
ACG
[ENA]
¢þ
>WENV170974014
MTKY01052901
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
12224
12300
+
Arg
ACG
[ENA]
¢þ
>WENV170974525
MTKY01064577
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
2908
2984
+
Arg
ACG
[ENA]
¢þ
>WENV170975867
MTKZ01002879
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
97023
97099
+
Arg
ACG
[ENA]
¢þ
>W1610613717
LGGE01000050
Synergistota
Synergistales bacterium 57_84 [LGGE]
5286
5362
+
Arg
ACG
[ENA]
¡û
>W1610614162
LGGV01000036
Synergistota
Synergistales bacterium 58_81 [LGGV]
2465
2389
-
Arg
ACG
[ENA]
¡û
>W1710734870
LGGE01000050
Synergistota
Synergistales bacterium 57_84 [LGGE]
5286
5362
+
Arg
ACG
[ENA]
¡û
>W1710735245
LGGV01000036
Synergistota
Synergistales bacterium 58_81 [LGGV]
2465
2389
-
Arg
ACG
[ENA]
¡û
Identical group No.279797 (10 seq.)
>WENV170561640
CZCA01018079
[CZCA] anaerobic digester metagenome; anaerobic digester
493
569
+
Arg
ACG
[ENA]
¢þ
>WENV170563078
CZCB01009701
[CZCB] anaerobic digester metagenome; anaerobic digester
4799
4875
+
Arg
ACG
[ENA]
¢þ
>WENV170687033
LFRM01174037
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
2236
2312
+
Arg
ACG
[ENA]
¢þ
>WENV170690219
LFRM01331089
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
177
253
+
Arg
ACG
[ENA]
¢þ
>WENV170717097
LSQX01024469
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
9917
9993
+
Arg
ACG
[ENA]
¢þ
>WENV170726605
LSQX01387557
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
1955
1879
-
Arg
ACG
[ENA]
¢þ
>WENV170967932
MTKW01004494
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
14589
14665
+
Arg
ACG
[ENA]
¢þ
>WENV170968213
MTKW01007162
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
4012
4088
+
Arg
ACG
[ENA]
¢þ
>C121008074
CP003198
Synergistota
Acetomicrobium mobile DSM 13181 [CP003198]
1430591
1430515
-
Arg
ACG
[Ensembl]
¡û
>W1710594068
FSQZ01000001
Synergistota
Acetomicrobium flavidum [FSQZ]
1730833
1730909
+
Arg
ACG
[ENA]
¡û
Identical group No.280292 (4 seq.)
>WENV170676941
LDZS01003283
[LDZS] terrestrial metagenome; oil reservoir sample K3
4018
4094
+
Arg
ACG
[ENA]
¢þ
>WENV170970632
MTKW01080942
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1237
1313
+
Arg
ACG
[ENA]
¢þ
>W1610613309
LGFQ01000103
Synergistota
Synergistales bacterium 54_24 [LGFQ]
4018
4094
+
Arg
ACG
[ENA]
¡û
>W1710734516
LGFQ01000103
Synergistota
Synergistales bacterium 54_24 [LGFQ]
4018
4094
+
Arg
ACG
[ENA]
¡û
Identical group No.290914 (14 seq.)
>W1711137610
LVBQ01000023
Synergistota
Synergistales bacterium Syner_03 [LVBQ]
21185
21261
+
Arg
ACG
[ENA]
¡û
>C171050569
CP016757
Synergistota
Cloacibacillus porcorum CL-84 [CP016757]
1415682
1415606
-
Arg
ACG
-
¡û
>WENV181908564
OGYB01000107
[OGYB] human gut metagenome; faeces
42062
42138
+
Arg
ACG
[ENA]
¢þ
>WENV181914619
OGYF01000561
[OGYF] human gut metagenome; faeces
7868
7792
-
Arg
ACG
[ENA]
¢þ
>WENV182031389
OHCS01014556
[OHCS] human gut metagenome; feces
765
689
-
Arg
ACG
[ENA]
¢þ
>WENV182180484
OHNO01001362
[OHNO] human gut metagenome; feces
7002
7078
+
Arg
ACG
[ENA]
¢þ
>WENV182221015
OHQS01030161
[OHQS] human gut metagenome; feces
96
20
-
Arg
ACG
[ENA]
¢þ
>WENV182538179
OIXH01048063
[OIXH] human gut metagenome; faeces
533
609
+
Arg
ACG
[ENA]
¢þ
>WENV170683773
LFRM01003206
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
12338
12414
+
Arg
ACG
[ENA]
¢þ
>WENV170684152
LFRM01023267
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
1786
1862
+
Arg
ACG
[ENA]
¢þ
>W141452053
JFBR01000002
Synergistota
Cloacibacillus evryensis DSM 19522 [JFBR]
30153
30077
-
Arg
ACG
[ENA]
¡û
>WENV170978305
MTKZ01046536
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
750
826
+
Arg
ACG
[ENA]
¢þ
>W121000464
ACUH01000019
Synergistota
Synergistes sp. 3_1_syn1 [ACUH]
7507
7583
+
Arg
ACG
[ENA]
¡û
>W1610948730
LVBQ01000023
Synergistota
Synergistales bacterium Syner_03 [LVBQ]
21185
21261
+
Arg
ACG
[ENA]
¡û
Identical group No.304073 (2 seq.)
>W1712039394
NFJQ01000015
Synergistota
Cloacibacillus sp. An23 [NFJQ]
6992
6916
-
Arg
ACG
[ENA]
¡û
>WENV183580372
OOCM01079984
[OOCM] human gut metagenome; human gut
72
148
+
Arg
ACG
[ENA]
¢þ
Identical group No.306789 (1 seq.)
>C10100323
CP001997
Synergistota
Aminobacterium colombiense DSM 12261 [CP001997]
1275956
1275880
-
Arg
ACG
[Ensembl]
¡û
Identical group No.310839 (17 seq.)
>WENV180728347
ODGU01040583
[ODGU] human metagenome; G_DNA_Supragingival plaque
309
385
+
Arg
ACG
[ENA]
¢þ
>WENV180734686
ODGZ01017820
[ODGZ] human metagenome; G_DNA_Supragingival plaque
335
259
-
Arg
ACG
[ENA]
¢þ
>WENV180751493
ODHS01058578
[ODHS] human metagenome; G_DNA_Supragingival plaque
149
73
-
Arg
ACG
[ENA]
¢þ
>WENV180798153
ODJB01297514
[ODJB] human metagenome; G_DNA_Supragingival plaque
102
26
-
Arg
ACG
[ENA]
¢þ
>WENV180809639
ODJK01030964
[ODJK] human metagenome; G_DNA_Subgingival plaque
430
354
-
Arg
ACG
[ENA]
¢þ
>WENV180943693
ODUC01001687
[ODUC] human metagenome; G_DNA_Supragingival plaque
5860
5784
-
Arg
ACG
[ENA]
¢þ
>WENV180951930
ODUH01077894
[ODUH] human metagenome; G_DNA_Subgingival plaque
372
448
+
Arg
ACG
[ENA]
¢þ
>WENV180976643
ODUY01185176
[ODUY] human metagenome; G_DNA_Supragingival plaque
238
314
+
Arg
ACG
[ENA]
¢þ
>WENV180981872
ODVE01078069
[ODVE] human metagenome; G_DNA_Supragingival plaque
307
231
-
Arg
ACG
[ENA]
¢þ
>WENV181050540
ODYD01024852
[ODYD] human metagenome; G_DNA_Supragingival plaque
1334
1410
+
Arg
ACG
[ENA]
¢þ
>WENV181077339
OEAP01043378
[OEAP] human metagenome; G_DNA_Supragingival plaque
742
818
+
Arg
ACG
[ENA]
¢þ
>WENV181080771
OEAS01079885
[OEAS] human metagenome; G_DNA_Supragingival plaque
421
497
+
Arg
ACG
[ENA]
¢þ
>WENV181091626
OEBC01060686
[OEBC] human metagenome; G_DNA_Supragingival plaque
152
76
-
Arg
ACG
[ENA]
¢þ
>WENV181180093
OEJT01076158
[OEJT] human metagenome; G_DNA_Supragingival plaque
305
229
-
Arg
ACG
[ENA]
¢þ
>WENV181182566
OEJV01017241
[OEJV] human metagenome; G_DNA_Supragingival plaque
869
945
+
Arg
ACG
[ENA]
¢þ
>WENV183509789
OMHJ01013764
[OMHJ] human oral metagenome; human oral
284
360
+
Arg
ACG
[ENA]
¢þ
>C161104032
FP929056
Synergistota
Fretibacterium fastidiosum SGP1 [FP929056]
2471780
2471704
-
Arg
ACG
-
¡û
Identical group No.315143 (7 seq.)
>WENV183515487
OMKS01067775
[OMKS] sediment metagenome; hot spring sediment
130
206
+
Arg
ACG
[ENA]
¢þ
>WENV170677148
LDZT01003252
[LDZT] terrestrial metagenome; oil reservoir sample SB1
16221
16145
-
Arg
ACG
[ENA]
¢þ
>WENV170679058
LDZU01006831
[LDZU] terrestrial metagenome; oil reservoir sample SB2
4905
4829
-
Arg
ACG
[ENA]
¢þ
>W1610613609
LGGB01000004
Synergistota
Synergistales bacterium 53_16 [LGGB]
16221
16145
-
Arg
ACG
[ENA]
¡û
>W1610614505
LGHG01000082
Synergistota
Synergistales bacterium 54_9 [LGHG]
4905
4829
-
Arg
ACG
[ENA]
¡û
>W1710734781
LGGB01000004
Synergistota
Synergistales bacterium 53_16 [LGGB]
16221
16145
-
Arg
ACG
[ENA]
¡û
>W1710735486
LGHG01000082
Synergistota
Synergistales bacterium 54_9 [LGHG]
4905
4829
-
Arg
ACG
[ENA]
¡û
Identical group No.317802 (4 seq.)
>WENV170563849
CZCB01032031
[CZCB] anaerobic digester metagenome; anaerobic digester
2035
1959
-
Arg
ACG
[ENA]
¢þ
>WENV170676489
LDZS01000097
[LDZS] terrestrial metagenome; oil reservoir sample K3
13
89
+
Arg
ACG
[ENA]
¢þ
>W09126637
ACJX01000213
Synergistota
Acetomicrobium hydrogeniformans ATCC BAA-1850 [ACJX]
105160
105084
-
Arg
ACG
[ENA]
¡û
>W1710530822
FNPD01000002
Synergistota
Acetomicrobium thermoterrenum DSM 13490 [FNPD]
108224
108148
-
Arg
ACG
[ENA]
¡û
Identical group No.318595 (4 seq.)
>WENV170676987
LDZS01003930
[LDZS] terrestrial metagenome; oil reservoir sample K3
3645
3721
+
Arg
ACG
[ENA]
¢þ
>C121005699
CP003096
Synergistota
Thermovirga lienii DSM 17291 [CP003096]
1252713
1252637
-
Arg
ACG
[Ensembl]
¡û
>W1610613349
LGFS01000092
Synergistota
Thermovirga lienii [LGFS]
3645
3721
+
Arg
ACG
[ENA]
¡û
>W1710734556
LGFS01000092
Synergistota
Thermovirga lienii [LGFS]
3645
3721
+
Arg
ACG
[ENA]
¡û
Identical group No.345107 (6 seq.)
>W1711744522
MUHX01000056
Synergistota
Pyramidobacter sp. C12-8 [MUHX]
1129
1053
-
Arg
ACG
[ENA]
¡û
>WENV181989279
OHAO01005548
[OHAO] human gut metagenome; faeces
294
218
-
Arg
ACG
[ENA]
¢þ
>WENV183419819
OMAZ01050421
[OMAZ] human gut metagenome; feces
598
522
-
Arg
ACG
[ENA]
¢þ
>WENV183764127
PPYE01315554
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
1611
1535
-
Arg
ACG
[ENA]
¢þ
>W10113023
ADFP01000051
Synergistota
Pyramidobacter piscolens W5455 [ADFP]
5330
5254
-
Arg
ACG
[ENA]
¡û
>W11116250
ADFP01000051
Synergistota
Pyramidobacter piscolens W5455 [ADFP]
5330
5254
-
Arg
ACG
[ENA]
¡û
Identical group No.350447 (2 seq.)
>W1711629570
MPPC01000024
Synergistota
Aminobacterium sp. EBM-42 [MPPC]
153964
154040
+
Arg
ACG
[ENA]
¡û
>WENV170719189
LSQX01104951
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
47513
47589
+
Arg
ACG
[ENA]
¢þ
Identical group No.352334 (5 seq.)
>W1711744523
MUHX01000056
Synergistota
Pyramidobacter sp. C12-8 [MUHX]
1012
936
-
Arg
ACG
[ENA]
¡û
>WENV181989280
OHAO01005548
[OHAO] human gut metagenome; faeces
179
103
-
Arg
ACG
[ENA]
¢þ
>WENV183764128
PPYE01315554
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
1496
1420
-
Arg
ACG
[ENA]
¢þ
>W10113024
ADFP01000051
Synergistota
Pyramidobacter piscolens W5455 [ADFP]
5213
5137
-
Arg
ACG
[ENA]
¡û
>W11116251
ADFP01000051
Synergistota
Pyramidobacter piscolens W5455 [ADFP]
5213
5137
-
Arg
ACG
[ENA]
¡û
Identical group No.352500 (7 seq.)
>WENV181311599
OFJB01005337
[OFJB] sludge metagenome; sludge
533
457
-
Arg
ACG
[ENA]
¢þ
>WENV181409295
OGCI01000070
[OGCI] hot springs metagenome; Hot spring water
28438
28362
-
Arg
ACG
[ENA]
¢þ
>W141278969
JAFY01000007
Synergistota
Aminiphilus circumscriptus DSM 16581 [JAFY]
697160
697236
+
Arg
ACG
[ENA]
¡û
>W09110150
ABUW01000006
Synergistota
Thermanaerovibrio acidaminovorans DSM 6589 [ABUW]
18731
18807
+
Arg
ACG
[ENA]
¡û
>C10113010
CP001818
Synergistota
Thermanaerovibrio acidaminovorans DSM 6589 [CP001818]
1134764
1134688
-
Arg
ACG
[Ensembl]
¡û
>W11138631
AEIV01000002
Synergistota
Aminomonas paucivorans DSM 12260 [AEIV]
243197
243121
-
Arg
ACG
[ENA]
¡û
>W121031647
AHGV01000001
Synergistota
Thermanaerovibrio velox DSM 12556 [AHGV]
1009097
1009021
-
Arg
ACG
[ENA]
¡û
Identical group No.363955 (3 seq.)
>W141146877
AWWC01000028
Synergistota
Jonquetella sp. BV3C21 [AWWC]
759
683
-
Arg
ACG
[ENA]
¡û
>W09132965
ACOO02000018
Synergistota
Jonquetella anthropi E3_33 E1 [ACOO]
131034
131110
+
Arg
ACG
[ENA]
¡û
>W121017489
AGRU01000003
Synergistota
Jonquetella anthropi DSM 22815 [AGRU]
237621
237697
+
Arg
ACG
[ENA]
¡û
Identical group No.368346 (6 seq.)
>WENV183710932
PDWI01056758
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
533
457
-
Arg
ACG
[ENA]
¢þ
>WENV183717232
PDWJ01000610
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
14837
14761
-
Arg
ACG
[ENA]
¢þ
>WENV183721331
PDWJ01064777
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
1495
1419
-
Arg
ACG
[ENA]
¢þ
>WENV170657164
JTFO01094296
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
115
191
+
Arg
ACG
[ENA]
¢þ
>W09108926
ABTR01000008
Synergistota
Dethiosulfovibrio peptidovorans DSM 11002 [ABTR]
28761
28837
+
Arg
ACG
[ENA]
¡û
>W1710608696
FXBB01000013
Synergistota
Dethiosulfovibrio salsuginis [FXBB]
6942
6866
-
Arg
ACG
[ENA]
¡û
Identical group No.441660 (1 seq.)
>W141278992
JAFZ01000001
Synergistota
Aminobacterium mobile DSM 12262 [JAFZ]
935507
935583
+
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK