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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Synergistota
Anticodon = CCA
HIT:
16 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.242481 (56 seq.)
>W1711137623
LVBQ01000053
Synergistota
Synergistales bacterium Syner_03 [LVBQ]
295
372
+
Trp
CCA
[ENA]
¡û
>W1712039369
NFJQ01000006
Synergistota
Cloacibacillus sp. An23 [NFJQ]
77262
77339
+
Trp
CCA
[ENA]
¡û
>C171050554
CP016757
Synergistota
Cloacibacillus porcorum CL-84 [CP016757]
3564022
3563945
-
Trp
CCA
-
¡û
>WENV180220974
OBAX01001378
[OBAX] human gut metagenome; human gut
800
723
-
Trp
CCA
[ENA]
¢þ
>WENV180221974
OBBB01027630
[OBBB] human gut metagenome; human gut
299
222
-
Trp
CCA
[ENA]
¢þ
>WENV180222350
OBBD01001901
[OBBD] human gut metagenome; human gut
469
546
+
Trp
CCA
[ENA]
¢þ
>WENV180223721
OBBH01007960
[OBBH] human gut metagenome; human gut
287
364
+
Trp
CCA
[ENA]
¢þ
>WENV180223892
OBBI01000196
[OBBI] human gut metagenome; human gut
2279
2202
-
Trp
CCA
[ENA]
¢þ
>WENV180224600
OBBK01002788
[OBBK] human gut metagenome; human gut
2279
2202
-
Trp
CCA
[ENA]
¢þ
>WENV180240263
OBDC01002483
[OBDC] human gut metagenome; human gut
731
654
-
Trp
CCA
[ENA]
¢þ
>WENV180240461
OBDD01000206
[OBDD] human gut metagenome; human gut
4735
4812
+
Trp
CCA
[ENA]
¢þ
>WENV180246576
OBDP01008388
[OBDP] human gut metagenome; human gut
296
373
+
Trp
CCA
[ENA]
¢þ
>WENV180274622
OBHE01002171
[OBHE] human gut metagenome; human gut
318
395
+
Trp
CCA
[ENA]
¢þ
>WENV180544147
OCIP01005632
[OCIP] human gut metagenome; human gut
296
373
+
Trp
CCA
[ENA]
¢þ
>WENV180544425
OCIQ01004451
[OCIQ] human gut metagenome; human gut
1346
1269
-
Trp
CCA
[ENA]
¢þ
>WENV180545385
OCIT01005244
[OCIT] human gut metagenome; human gut
296
373
+
Trp
CCA
[ENA]
¢þ
>WENV180548532
OCIX01001897
[OCIX] human gut metagenome; human gut
2285
2208
-
Trp
CCA
[ENA]
¢þ
>WENV180623217
OCQE01002731
[OCQE] human gut metagenome; human gut
2285
2208
-
Trp
CCA
[ENA]
¢þ
>WENV180629725
OCQP01182991
[OCQP] human gut metagenome; human gut
89
166
+
Trp
CCA
[ENA]
¢þ
>WENV181641924
OGNF01034961
[OGNF] metagenome; Human gut stool
1134
1211
+
Trp
CCA
[ENA]
¢þ
>WENV181908756
OGYB01000559
[OGYB] human gut metagenome; faeces
298
375
+
Trp
CCA
[ENA]
¢þ
>WENV181910659
OGYC01028334
[OGYC] human gut metagenome; faeces
156
233
+
Trp
CCA
[ENA]
¢þ
>WENV181915432
OGYF01006933
[OGYF] human gut metagenome; faeces
296
373
+
Trp
CCA
[ENA]
¢þ
>WENV181980261
OHAF01015426
[OHAF] human gut metagenome; faeces
1291
1368
+
Trp
CCA
[ENA]
¢þ
>WENV182005936
OHBE01033537
[OHBE] human gut metagenome; faeces
1063
986
-
Trp
CCA
[ENA]
¢þ
>WENV182031140
OHCS01003583
[OHCS] human gut metagenome; feces
623
700
+
Trp
CCA
[ENA]
¢þ
>WENV182143641
OHKV01008158
[OHKV] human gut metagenome; feces
1710
1787
+
Trp
CCA
[ENA]
¢þ
>WENV182172753
OHMY01046706
[OHMY] human gut metagenome; feces
602
525
-
Trp
CCA
[ENA]
¢þ
>WENV182180458
OHNO01001164
[OHNO] human gut metagenome; feces
9528
9605
+
Trp
CCA
[ENA]
¢þ
>WENV182212638
OHQG01002718
[OHQG] human gut metagenome; feces
3359
3282
-
Trp
CCA
[ENA]
¢þ
>WENV182215922
OHQM01006666
[OHQM] human gut metagenome; feces
1703
1626
-
Trp
CCA
[ENA]
¢þ
>WENV182274863
OHUK01017813
[OHUK] human gut metagenome; feces
1123
1200
+
Trp
CCA
[ENA]
¢þ
>WENV182537801
OIXH01018727
[OIXH] human gut metagenome; faeces
298
375
+
Trp
CCA
[ENA]
¢þ
>WENV182686757
OJNZ01037606
[OJNZ] human gut metagenome; human gut
72
149
+
Trp
CCA
[ENA]
¢þ
>WENV182883889
OKSB01057958
[OKSB] human gut metagenome; faeces
852
775
-
Trp
CCA
[ENA]
¢þ
>WENV182891984
OKSH01010244
[OKSH] human gut metagenome; faeces
577
500
-
Trp
CCA
[ENA]
¢þ
>WENV182906669
OKTD01015424
[OKTD] human gut metagenome; feces
919
996
+
Trp
CCA
[ENA]
¢þ
>WENV183039470
OLGB01007527
[OLGB] human gut metagenome; faeces
298
375
+
Trp
CCA
[ENA]
¢þ
>WENV183156957
OLOS01066008
[OLOS] human gut metagenome; faeces
492
569
+
Trp
CCA
[ENA]
¢þ
>WENV170651017
JRYE01147346
[JRYE] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 4 ppm DO
48
125
+
Trp
CCA
[ENA]
¢þ
>WENV170655880
JTFN01090113
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
544
467
-
Trp
CCA
[ENA]
¢þ
>WENV170685741
LFRM01107040
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
12
89
+
Trp
CCA
[ENA]
¢þ
>WENV170688885
LFRM01266303
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
1447
1524
+
Trp
CCA
[ENA]
¢þ
>WENV170690820
LFRM01363845
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
426
503
+
Trp
CCA
[ENA]
¢þ
>WENV170725608
LSQX01349331
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
266
343
+
Trp
CCA
[ENA]
¢þ
>WENV170726515
LSQX01383709
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
5787
5710
-
Trp
CCA
[ENA]
¢þ
>W141452035
JFBR01000002
Synergistota
Cloacibacillus evryensis DSM 19522 [JFBR]
2178680
2178603
-
Trp
CCA
[ENA]
¡û
>WENV170976113
MTKZ01004630
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
2125
2048
-
Trp
CCA
[ENA]
¢þ
>W141701192
JMKI01000005
Synergistota
Synergistes jonesii [JMKI]
11760
11683
-
Trp
CCA
[ENA]
¡û
>W121000455
ACUH01000001
Synergistota
Synergistes sp. 3_1_syn1 [ACUH]
23472
23395
-
Trp
CCA
[ENA]
¡û
>W1610948743
LVBQ01000053
Synergistota
Synergistales bacterium Syner_03 [LVBQ]
295
372
+
Trp
CCA
[ENA]
¡û
>W1710629235
JPZQ01000006
Synergistota
Synergistes jonesii [JPZQ]
10735
10658
-
Trp
CCA
[ENA]
¡û
>W1710629278
JPZR01000006
Synergistota
Synergistes jonesii [JPZR]
10735
10658
-
Trp
CCA
[ENA]
¡û
>W1710629321
JPZS01000004
Synergistota
Synergistes jonesii [JPZS]
10735
10658
-
Trp
CCA
[ENA]
¡û
>W1710631839
JQEK01000033
Synergistota
Synergistes jonesii [JQEK]
96915
96992
+
Trp
CCA
[ENA]
¡û
>W1710631869
JQEL01000004
Synergistota
Synergistes jonesii [JQEL]
10735
10658
-
Trp
CCA
[ENA]
¡û
Identical group No.253210 (4 seq.)
>WENV181409526
OGCI01000259
[OGCI] hot springs metagenome; Hot spring water
67486
67409
-
Trp
CCA
[ENA]
¢þ
>W09110112
ABUW01000002
Synergistota
Thermanaerovibrio acidaminovorans DSM 6589 [ABUW]
291
368
+
Trp
CCA
[ENA]
¡û
>C10112996
CP001818
Synergistota
Thermanaerovibrio acidaminovorans DSM 6589 [CP001818]
1583744
1583667
-
Trp
CCA
[Ensembl]
¡û
>W11138627
AEIV01000002
Synergistota
Aminomonas paucivorans DSM 12260 [AEIV]
647053
646976
-
Trp
CCA
[ENA]
¡û
Identical group No.264344 (1 seq.)
>W121031609
AHGV01000001
Synergistota
Thermanaerovibrio velox DSM 12556 [AHGV]
287436
287513
+
Trp
CCA
[ENA]
¡û
Identical group No.294014 (7 seq.)
>W1711744508
MUHX01000030
Synergistota
Pyramidobacter sp. C12-8 [MUHX]
338
414
+
Trp
CCA
[ENA]
¡û
>WENV181638900
OGNC01028858
[OGNC] metagenome; Human gut stool
1025
949
-
Trp
CCA
[ENA]
¢þ
>WENV181989428
OHAO01009542
[OHAO] human gut metagenome; faeces
3160
3084
-
Trp
CCA
[ENA]
¢þ
>WENV183764059
PPYE01312981
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
1350
1426
+
Trp
CCA
[ENA]
¢þ
>WENV183787270
PPYF01318842
[PPYF] human gut metagenome; stool from patient with Crohn's disease
2403
2327
-
Trp
CCA
[ENA]
¢þ
>W10113032
ADFP01000084
Synergistota
Pyramidobacter piscolens W5455 [ADFP]
289
365
+
Trp
CCA
[ENA]
¡û
>W11116259
ADFP01000084
Synergistota
Pyramidobacter piscolens W5455 [ADFP]
289
365
+
Trp
CCA
[ENA]
¡û
Identical group No.302266 (3 seq.)
>WENV170008200
AMZC01004373
[AMZC] bioreactor sludge metagenome; anaerobic thermophilic cellulolytic sludge from lab reactor
4771
4847
+
Trp
CCA
[ENA]
¢þ
>C121008045
CP003198
Synergistota
Acetomicrobium mobile DSM 13181 [CP003198]
204068
204144
+
Trp
CCA
[Ensembl]
¡û
>W1710594074
FSQZ01000001
Synergistota
Acetomicrobium flavidum [FSQZ]
873297
873221
-
Trp
CCA
[ENA]
¡û
Identical group No.317787 (3 seq.)
>WENV170563756
CZCB01028390
[CZCB] anaerobic digester metagenome; anaerobic digester
3855
3779
-
Trp
CCA
[ENA]
¢þ
>W09126626
ACJX01000176
Synergistota
Acetomicrobium hydrogeniformans ATCC BAA-1850 [ACJX]
30509
30433
-
Trp
CCA
[ENA]
¡û
>W1710530847
FNPD01000012
Synergistota
Acetomicrobium thermoterrenum DSM 13490 [FNPD]
15531
15455
-
Trp
CCA
[ENA]
¡û
Identical group No.318590 (3 seq.)
>WENV170676927
LDZS01003208
[LDZS] terrestrial metagenome; oil reservoir sample K3
188
264
+
Trp
CCA
[ENA]
¢þ
>W1610613295
LGFQ01000028
Synergistota
Synergistales bacterium 54_24 [LGFQ]
188
264
+
Trp
CCA
[ENA]
¡û
>W1710734502
LGFQ01000028
Synergistota
Synergistales bacterium 54_24 [LGFQ]
188
264
+
Trp
CCA
[ENA]
¡û
Identical group No.363243 (3 seq.)
>W141146829
AWWC01000001
Synergistota
Jonquetella sp. BV3C21 [AWWC]
261
337
+
Trp
CCA
[ENA]
¡û
>W09132986
ACOO02000031
Synergistota
Jonquetella anthropi E3_33 E1 [ACOO]
118927
118851
-
Trp
CCA
[ENA]
¡û
>W121017515
AGRU01000004
Synergistota
Jonquetella anthropi DSM 22815 [AGRU]
209774
209698
-
Trp
CCA
[ENA]
¡û
Identical group No.374081 (1 seq.)
>W131157314
AQRZ01000027
Synergistota
Synergistetes bacterium JGI 0000079-D21 [AQRZ]
11705
11629
-
Trp
CCA
[ENA]
¡û
Identical group No.423923 (1 seq.)
>W09108890
ABTR01000001
Synergistota
Dethiosulfovibrio peptidovorans DSM 11002 [ABTR]
421985
421909
-
Trp
CCA
[ENA]
¡û
Identical group No.429602 (1 seq.)
>W1710608701
FXBB01000019
Synergistota
Dethiosulfovibrio salsuginis [FXBB]
457
533
+
Trp
CCA
[ENA]
¡û
Identical group No.490519 (13 seq.)
>W1711137576
LVBO01000616
Synergistota
Synergistales bacterium Syner_01 [LVBO]
254
329
+
Trp
CCA
[ENA]
¡û
>W1711137585
LVBP01000107
Synergistota
Synergistales bacterium Syner_02 [LVBP]
7409
7334
-
Trp
CCA
[ENA]
¡û
>W1711629535
MPPC01000004
Synergistota
Aminobacterium sp. EBM-42 [MPPC]
85925
85850
-
Trp
CCA
[ENA]
¡û
>WENV180098185
MTBK01232328
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
368
443
+
Trp
CCA
[ENA]
¢þ
>WENV180346741
OBLN01259180
[OBLN] sediment metagenome; sediment
97
172
+
Trp
CCA
[ENA]
¢þ
>W141278940
JAFY01000005
Synergistota
Aminiphilus circumscriptus DSM 16581 [JAFY]
461985
461910
-
Trp
CCA
[ENA]
¡û
>W141279025
JAFZ01000004
Synergistota
Aminobacterium mobile DSM 12262 [JAFZ]
90213
90138
-
Trp
CCA
[ENA]
¡û
>WENV170657043
JTFO01071962
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
367
442
+
Trp
CCA
[ENA]
¢þ
>WENV170720778
LSQX01166068
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
450
525
+
Trp
CCA
[ENA]
¢þ
>WENV170974269
MTKY01056430
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
240
315
+
Trp
CCA
[ENA]
¢þ
>C10100295
CP001997
Synergistota
Aminobacterium colombiense DSM 12261 [CP001997]
331977
332052
+
Trp
CCA
[Ensembl]
¡û
>W1610948696
LVBO01000616
Synergistota
Synergistales bacterium Syner_01 [LVBO]
254
329
+
Trp
CCA
[ENA]
¡û
>W1610948705
LVBP01000107
Synergistota
Synergistales bacterium Syner_02 [LVBP]
7409
7334
-
Trp
CCA
[ENA]
¡û
Identical group No.500244 (5 seq.)
>WENV183514348
OMKS01016815
[OMKS] sediment metagenome; hot spring sediment
3449
3524
+
Trp
CCA
[ENA]
¢þ
>WENV170676983
LDZS01003870
[LDZS] terrestrial metagenome; oil reservoir sample K3
5002
4927
-
Trp
CCA
[ENA]
¢þ
>C121005669
CP003096
Synergistota
Thermovirga lienii DSM 17291 [CP003096]
472523
472598
+
Trp
CCA
[Ensembl]
¡û
>W1610613345
LGFS01000032
Synergistota
Thermovirga lienii [LGFS]
5002
4927
-
Trp
CCA
[ENA]
¡û
>W1710734552
LGFS01000032
Synergistota
Thermovirga lienii [LGFS]
5002
4927
-
Trp
CCA
[ENA]
¡û
Identical group No.500253 (8 seq.)
>WENV181230280
OFEK01000582
[OFEK] activated sludge metagenome; Anaerobic digester
35540
35465
-
Trp
CCA
[ENA]
¢þ
>WENV183514390
OMKS01018074
[OMKS] sediment metagenome; hot spring sediment
48
123
+
Trp
CCA
[ENA]
¢þ
>WENV170678367
LDZT01014097
[LDZT] terrestrial metagenome; oil reservoir sample SB1
2816
2741
-
Trp
CCA
[ENA]
¢þ
>WENV170678632
LDZU01003454
[LDZU] terrestrial metagenome; oil reservoir sample SB2
3451
3376
-
Trp
CCA
[ENA]
¢þ
>W1610613719
LGGE01000090
Synergistota
Synergistales bacterium 57_84 [LGGE]
2816
2741
-
Trp
CCA
[ENA]
¡û
>W1610614170
LGGV01000079
Synergistota
Synergistales bacterium 58_81 [LGGV]
3451
3376
-
Trp
CCA
[ENA]
¡û
>W1710734872
LGGE01000090
Synergistota
Synergistales bacterium 57_84 [LGGE]
2816
2741
-
Trp
CCA
[ENA]
¡û
>W1710735253
LGGV01000079
Synergistota
Synergistales bacterium 58_81 [LGGV]
3451
3376
-
Trp
CCA
[ENA]
¡û
Identical group No.504141 (3 seq.)
>WENV170679066
LDZU01006973
[LDZU] terrestrial metagenome; oil reservoir sample SB2
381
456
+
Trp
CCA
[ENA]
¢þ
>W1610614513
LGHG01000224
Synergistota
Synergistales bacterium 54_9 [LGHG]
381
456
+
Trp
CCA
[ENA]
¡û
>W1710735494
LGHG01000224
Synergistota
Synergistales bacterium 54_9 [LGHG]
381
456
+
Trp
CCA
[ENA]
¡û
Identical group No.538075 (3 seq.)
>WENV180809650
ODJK01032254
[ODJK] human metagenome; G_DNA_Subgingival plaque
269
344
+
Trp
CCA
[ENA]
¢þ
>WENV181081396
OEAS01198706
[OEAS] human metagenome; G_DNA_Supragingival plaque
282
357
+
Trp
CCA
[ENA]
¢þ
>C161104020
FP929056
Synergistota
Fretibacterium fastidiosum SGP1 [FP929056]
447649
447724
+
Trp
CCA
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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