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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Synergistota
Anticodon = CTG
HIT:
14 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.658540 (5 seq.)
>WENV170967347
MTKW01001001
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
99584
99658
+
Gln
CTG
[ENA]
¢þ
>WENV170971379
MTKX01004540
[MTKX] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1294
1220
-
Gln
CTG
[ENA]
¢þ
>WENV170973969
MTKY01052283
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
9978
9904
-
Gln
CTG
[ENA]
¢þ
>WENV170978269
MTKZ01044974
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
24741
24815
+
Gln
CTG
[ENA]
¢þ
>C121005692
CP003096
Synergistota
Thermovirga lienii DSM 17291 [CP003096]
1455673
1455747
+
Gln
CTG
[Ensembl]
¡û
Identical group No.673445 (6 seq.)
>WENV170008088
AMZC01001421
[AMZC] bioreactor sludge metagenome; anaerobic thermophilic cellulolytic sludge from lab reactor
803
877
+
Gln
CTG
[ENA]
¢þ
>WENV170564039
CZCB01044315
[CZCB] anaerobic digester metagenome; anaerobic digester
221
295
+
Gln
CTG
[ENA]
¢þ
>W09126618
ACJX01000164
Synergistota
Acetomicrobium hydrogeniformans ATCC BAA-1850 [ACJX]
18318
18392
+
Gln
CTG
[ENA]
¡û
>C121008086
CP003198
Synergistota
Acetomicrobium mobile DSM 13181 [CP003198]
529274
529200
-
Gln
CTG
[Ensembl]
¡û
>W1710530817
FNPD01000001
Synergistota
Acetomicrobium thermoterrenum DSM 13490 [FNPD]
126133
126059
-
Gln
CTG
[ENA]
¡û
>W1710594060
FSQZ01000001
Synergistota
Acetomicrobium flavidum [FSQZ]
543257
543331
+
Gln
CTG
[ENA]
¡û
Identical group No.684039 (3 seq.)
>WENV170676936
LDZS01003275
[LDZS] terrestrial metagenome; oil reservoir sample K3
1856
1930
+
Gln
CTG
[ENA]
¢þ
>W1610613304
LGFQ01000095
Synergistota
Synergistales bacterium 54_24 [LGFQ]
1856
1930
+
Gln
CTG
[ENA]
¡û
>W1710734511
LGFQ01000095
Synergistota
Synergistales bacterium 54_24 [LGFQ]
1856
1930
+
Gln
CTG
[ENA]
¡û
Identical group No.684075 (16 seq.)
>WENV181230210
OFEK01000419
[OFEK] activated sludge metagenome; Anaerobic digester
26109
26035
-
Gln
CTG
[ENA]
¢þ
>WENV170677172
LDZT01003320
[LDZT] terrestrial metagenome; oil reservoir sample SB1
1256
1182
-
Gln
CTG
[ENA]
¢þ
>WENV170677180
LDZT01003503
[LDZT] terrestrial metagenome; oil reservoir sample SB1
953
1027
+
Gln
CTG
[ENA]
¢þ
>WENV170678362
LDZT01014054
[LDZT] terrestrial metagenome; oil reservoir sample SB1
3876
3802
-
Gln
CTG
[ENA]
¢þ
>WENV170678630
LDZU01003441
[LDZU] terrestrial metagenome; oil reservoir sample SB2
5111
5037
-
Gln
CTG
[ENA]
¢þ
>WENV170679042
LDZU01006788
[LDZU] terrestrial metagenome; oil reservoir sample SB2
4281
4207
-
Gln
CTG
[ENA]
¢þ
>W1610613633
LGGB01000072
Synergistota
Synergistales bacterium 53_16 [LGGB]
1256
1182
-
Gln
CTG
[ENA]
¡û
>W1610613641
LGGB01000255
Synergistota
Synergistales bacterium 53_16 [LGGB]
953
1027
+
Gln
CTG
[ENA]
¡û
>W1610613714
LGGE01000047
Synergistota
Synergistales bacterium 57_84 [LGGE]
3876
3802
-
Gln
CTG
[ENA]
¡û
>W1610614168
LGGV01000066
Synergistota
Synergistales bacterium 58_81 [LGGV]
5111
5037
-
Gln
CTG
[ENA]
¡û
>W1610614489
LGHG01000039
Synergistota
Synergistales bacterium 54_9 [LGHG]
4281
4207
-
Gln
CTG
[ENA]
¡û
>W1710734805
LGGB01000072
Synergistota
Synergistales bacterium 53_16 [LGGB]
1256
1182
-
Gln
CTG
[ENA]
¡û
>W1710734813
LGGB01000255
Synergistota
Synergistales bacterium 53_16 [LGGB]
953
1027
+
Gln
CTG
[ENA]
¡û
>W1710734867
LGGE01000047
Synergistota
Synergistales bacterium 57_84 [LGGE]
3876
3802
-
Gln
CTG
[ENA]
¡û
>W1710735251
LGGV01000066
Synergistota
Synergistales bacterium 58_81 [LGGV]
5111
5037
-
Gln
CTG
[ENA]
¡û
>W1710735470
LGHG01000039
Synergistota
Synergistales bacterium 54_9 [LGHG]
4281
4207
-
Gln
CTG
[ENA]
¡û
Identical group No.762361 (1 seq.)
>W141278950
JAFY01000007
Synergistota
Aminiphilus circumscriptus DSM 16581 [JAFY]
43463
43537
+
Gln
CTG
[ENA]
¡û
Identical group No.785081 (19 seq.)
>W1712039360
NFJQ01000002
Synergistota
Cloacibacillus sp. An23 [NFJQ]
296967
297040
+
Gln
CTG
[ENA]
¡û
>C171050560
CP016757
Synergistota
Cloacibacillus porcorum CL-84 [CP016757]
1929304
1929231
-
Gln
CTG
-
¡û
>WENV181865433
OGWU01025995
[OGWU] human gut metagenome; faeces
40
113
+
Gln
CTG
[ENA]
¢þ
>WENV181915136
OGYF01003271
[OGYF] human gut metagenome; faeces
6457
6384
-
Gln
CTG
[ENA]
¢þ
>WENV182031351
OHCS01011600
[OHCS] human gut metagenome; feces
1132
1205
+
Gln
CTG
[ENA]
¢þ
>WENV182143782
OHKV01024712
[OHKV] human gut metagenome; feces
461
388
-
Gln
CTG
[ENA]
¢þ
>WENV182180557
OHNO01002586
[OHNO] human gut metagenome; feces
3211
3284
+
Gln
CTG
[ENA]
¢þ
>WENV182212715
OHQG01004770
[OHQG] human gut metagenome; feces
606
679
+
Gln
CTG
[ENA]
¢þ
>WENV182215862
OHQM01004924
[OHQM] human gut metagenome; feces
1894
1967
+
Gln
CTG
[ENA]
¢þ
>WENV182538107
OIXH01039903
[OIXH] human gut metagenome; faeces
341
414
+
Gln
CTG
[ENA]
¢þ
>WENV183580209
OOCM01032295
[OOCM] human gut metagenome; human gut
153
80
-
Gln
CTG
[ENA]
¢þ
>W141452041
JFBR01000002
Synergistota
Cloacibacillus evryensis DSM 19522 [JFBR]
555619
555546
-
Gln
CTG
[ENA]
¡û
>W141701211
JMKI01000037
Synergistota
Synergistes jonesii [JMKI]
128454
128381
-
Gln
CTG
[ENA]
¡û
>W121000497
ACUH01000051
Synergistota
Synergistes sp. 3_1_syn1 [ACUH]
124970
124897
-
Gln
CTG
[ENA]
¡û
>W1710629253
JPZQ01000048
Synergistota
Synergistes jonesii [JPZQ]
29223
29150
-
Gln
CTG
[ENA]
¡û
>W1710629297
JPZR01000038
Synergistota
Synergistes jonesii [JPZR]
29231
29158
-
Gln
CTG
[ENA]
¡û
>W1710629339
JPZS01000041
Synergistota
Synergistes jonesii [JPZS]
29234
29161
-
Gln
CTG
[ENA]
¡û
>W1710631858
JQEK01000051
Synergistota
Synergistes jonesii [JQEK]
348
275
-
Gln
CTG
[ENA]
¡û
>W1710631887
JQEL01000043
Synergistota
Synergistes jonesii [JQEL]
29228
29155
-
Gln
CTG
[ENA]
¡û
Identical group No.789705 (10 seq.)
>W1711629565
MPPC01000017
Synergistota
Aminobacterium sp. EBM-42 [MPPC]
84605
84532
-
Gln
CTG
[ENA]
¡û
>WENV181409142
OGCI01000009
[OGCI] hot springs metagenome; Hot spring water
142739
142666
-
Gln
CTG
[ENA]
¢þ
>W141279014
JAFZ01000002
Synergistota
Aminobacterium mobile DSM 12262 [JAFZ]
237615
237688
+
Gln
CTG
[ENA]
¡û
>WENV170688480
LFRM01247800
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
466
393
-
Gln
CTG
[ENA]
¢þ
>WENV170716681
LSQX01007843
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
64907
64980
+
Gln
CTG
[ENA]
¢þ
>W09110129
ABUW01000003
Synergistota
Thermanaerovibrio acidaminovorans DSM 6589 [ABUW]
143211
143138
-
Gln
CTG
[ENA]
¡û
>C10100336
CP001997
Synergistota
Aminobacterium colombiense DSM 12261 [CP001997]
596473
596400
-
Gln
CTG
[Ensembl]
¡û
>C10113020
CP001818
Synergistota
Thermanaerovibrio acidaminovorans DSM 6589 [CP001818]
507279
507206
-
Gln
CTG
[Ensembl]
¡û
>W11138603
AEIV01000001
Synergistota
Aminomonas paucivorans DSM 12260 [AEIV]
896285
896212
-
Gln
CTG
[ENA]
¡û
>W121031641
AHGV01000001
Synergistota
Thermanaerovibrio velox DSM 12556 [AHGV]
1367048
1367121
+
Gln
CTG
[ENA]
¡û
Identical group No.790979 (14 seq.)
>WENV180728869
ODGU01113928
[ODGU] human metagenome; G_DNA_Supragingival plaque
136
63
-
Gln
CTG
[ENA]
¢þ
>WENV180731788
ODGW01014151
[ODGW] human metagenome; G_DNA_Supragingival plaque
57
130
+
Gln
CTG
[ENA]
¢þ
>WENV180735229
ODGZ01105444
[ODGZ] human metagenome; G_DNA_Supragingival plaque
144
71
-
Gln
CTG
[ENA]
¢þ
>WENV180751789
ODHS01163672
[ODHS] human metagenome; G_DNA_Supragingival plaque
183
256
+
Gln
CTG
[ENA]
¢þ
>WENV180797718
ODJB01108947
[ODJB] human metagenome; G_DNA_Supragingival plaque
428
501
+
Gln
CTG
[ENA]
¢þ
>WENV180809613
ODJK01029095
[ODJK] human metagenome; G_DNA_Subgingival plaque
456
383
-
Gln
CTG
[ENA]
¢þ
>WENV180943981
ODUC01005540
[ODUC] human metagenome; G_DNA_Supragingival plaque
5390
5317
-
Gln
CTG
[ENA]
¢þ
>WENV180981948
ODVE01094051
[ODVE] human metagenome; G_DNA_Supragingival plaque
214
287
+
Gln
CTG
[ENA]
¢þ
>WENV181050063
ODYD01005462
[ODYD] human metagenome; G_DNA_Supragingival plaque
4342
4415
+
Gln
CTG
[ENA]
¢þ
>WENV181076587
OEAP01008230
[OEAP] human metagenome; G_DNA_Supragingival plaque
1559
1632
+
Gln
CTG
[ENA]
¢þ
>WENV181081445
OEAS01211806
[OEAS] human metagenome; G_DNA_Supragingival plaque
360
287
-
Gln
CTG
[ENA]
¢þ
>WENV181091371
OEBC01028519
[OEBC] human metagenome; G_DNA_Supragingival plaque
1262
1335
+
Gln
CTG
[ENA]
¢þ
>WENV181182757
OEJV01040940
[OEJV] human metagenome; G_DNA_Supragingival plaque
676
749
+
Gln
CTG
[ENA]
¢þ
>C161104051
FP929056
Synergistota
Fretibacterium fastidiosum SGP1 [FP929056]
837292
837219
-
Gln
CTG
-
¡û
Identical group No.801343 (8 seq.)
>W1711744504
MUHX01000024
Synergistota
Pyramidobacter sp. C12-8 [MUHX]
477
550
+
Gln
CTG
[ENA]
¡û
>WENV181639040
OGNC01071976
[OGNC] metagenome; Human gut stool
79
6
-
Gln
CTG
[ENA]
¢þ
>WENV181973519
OHAA01073314
[OHAA] human gut metagenome; faeces
373
446
+
Gln
CTG
[ENA]
¢þ
>WENV181989568
OHAO01016880
[OHAO] human gut metagenome; faeces
246
173
-
Gln
CTG
[ENA]
¢þ
>WENV183419584
OMAZ01009566
[OMAZ] human gut metagenome; feces
119
46
-
Gln
CTG
[ENA]
¢þ
>WENV183763986
PPYE01311476
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
21130
21203
+
Gln
CTG
[ENA]
¢þ
>W10113046
ADFP01000123
Synergistota
Pyramidobacter piscolens W5455 [ADFP]
26959
26886
-
Gln
CTG
[ENA]
¡û
>W11116273
ADFP01000123
Synergistota
Pyramidobacter piscolens W5455 [ADFP]
26959
26886
-
Gln
CTG
[ENA]
¡û
Identical group No.806287 (4 seq.)
>W1711137558
LVBO01000142
Synergistota
Synergistales bacterium Syner_01 [LVBO]
20108
20035
-
Gln
CTG
[ENA]
¡û
>WENV170668841
LAHQ01063819
[LAHQ] activated sludge metagenome; sample C-2; Sludge from acidogenic chamber (second chamber) of Anaerobic Baffled Reactor over
186
259
+
Gln
CTG
[ENA]
¢þ
>WENV170720622
LSQX01159621
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
7307
7380
+
Gln
CTG
[ENA]
¢þ
>W1610948678
LVBO01000142
Synergistota
Synergistales bacterium Syner_01 [LVBO]
20108
20035
-
Gln
CTG
[ENA]
¡û
Identical group No.806789 (3 seq.)
>W141146845
AWWC01000012
Synergistota
Jonquetella sp. BV3C21 [AWWC]
72391
72464
+
Gln
CTG
[ENA]
¡û
>W09132943
ACOO02000001
Synergistota
Jonquetella anthropi E3_33 E1 [ACOO]
94484
94557
+
Gln
CTG
[ENA]
¡û
>W121017510
AGRU01000004
Synergistota
Jonquetella anthropi DSM 22815 [AGRU]
622993
623066
+
Gln
CTG
[ENA]
¡û
Identical group No.808865 (5 seq.)
>W1711137615
LVBQ01000027
Synergistota
Synergistales bacterium Syner_03 [LVBQ]
14043
13970
-
Gln
CTG
[ENA]
¡û
>WENV181312094
OFJB01041416
[OFJB] sludge metagenome; sludge
636
563
-
Gln
CTG
[ENA]
¢þ
>WENV170656810
JTFO01046510
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
321
394
+
Gln
CTG
[ENA]
¢þ
>WENV170687612
LFRM01201398
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
15342
15415
+
Gln
CTG
[ENA]
¢þ
>W1610948735
LVBQ01000027
Synergistota
Synergistales bacterium Syner_03 [LVBQ]
14043
13970
-
Gln
CTG
[ENA]
¡û
Identical group No.810114 (1 seq.)
>W131157326
AQRZ01000041
Synergistota
Synergistetes bacterium JGI 0000079-D21 [AQRZ]
6040
5967
-
Gln
CTG
[ENA]
¡û
Identical group No.826630 (2 seq.)
>W09108904
ABTR01000002
Synergistota
Dethiosulfovibrio peptidovorans DSM 11002 [ABTR]
116679
116752
+
Gln
CTG
[ENA]
¡û
>W1710608689
FXBB01000010
Synergistota
Dethiosulfovibrio salsuginis [FXBB]
61654
61727
+
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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