This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Synergistota
Anticodon = TCA
HIT:
14 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.309 (2 seq.)
>W10500430
ADFP01000051
Synergistota
Pyramidobacter piscolens W5455 [ADFP]
15794
15696
-
seC
TCA
[ENA]
¡û
>W1750076742
MUHX01000019
Synergistota
Pyramidobacter sp. C12-8 [MUHX]
37966
38064
+
SeC
TCA
[ENA]
¡û
Identical group No.493 (1 seq.)
>W09200027
ABTR01000003
Synergistota
Dethiosulfovibrio peptidovorans DSM 11002 [ABTR]
79190
79288
+
SeC
TCA
[ENA]
¡û
Identical group No.516 (1 seq.)
>W1720001237
FXBB01000001
Synergistota
Dethiosulfovibrio salsuginis [FXBB]
41871
41969
+
SeC
TCA
[ENA]
¡û
Identical group No.718 (2 seq.)
>C122000014
CP003198
Synergistota
Acetomicrobium mobile DSM 13181 [CP003198]
761894
761991
+
SeC
TCA
[Ensembl]
¡û
>W1720001186
FSQZ01000001
Synergistota
Acetomicrobium flavidum [FSQZ]
325867
325770
-
SeC
TCA
[ENA]
¡û
Identical group No.1072 (2 seq.)
>W1711137570
LVBO01000403
Synergistota
Synergistales bacterium Syner_01 [LVBO]
102
5
-
SeC(p)
TCA
[ENA]
¡û
>W1610948690
LVBO01000403
Synergistota
Synergistales bacterium Syner_01 [LVBO]
102
5
-
SeC(p)
TCA
[ENA]
¡û
Identical group No.1187 (1 seq.)
>W131157313
AQRZ01000002
Synergistota
Synergistetes bacterium JGI 0000079-D21 [AQRZ]
1782
1685
-
SeC
TCA
[ENA]
¡û
Identical group No.1235 (1 seq.)
>W1720001009
FNPD01000009
Synergistota
Acetomicrobium thermoterrenum DSM 13490 [FNPD]
40101
40004
-
SeC
TCA
[ENA]
¡û
Identical group No.1369 (1 seq.)
>W09200060
ACJX01000261
Synergistota
Acetomicrobium hydrogeniformans ATCC BAA-1850 [ACJX]
819
916
+
SeC
TCA
[ENA]
¡û
Identical group No.1556 (1 seq.)
>W141278977
JAFY01000007
Synergistota
Aminiphilus circumscriptus DSM 16581 [JAFY]
889890
889793
-
SeC
TCA
[ENA]
¡û
Identical group No.1929 (1 seq.)
>W1712039373
NFJQ01000008
Synergistota
Cloacibacillus sp. An23 [NFJQ]
180129
180225
+
SeC(p)
TCA
[ENA]
¡û
Identical group No.1945 (6 seq.)
>W145031065
JMKI01000037
Synergistota
Synergistes jonesii [JMKI]
128875
128779
-
seC
TCA
[ENA]
¡û
>W1750018924
JPZQ01000048
Synergistota
Synergistes jonesii [JPZQ]
29644
29548
-
SeC
TCA
[ENA]
¡û
>W1750018927
JPZR01000038
Synergistota
Synergistes jonesii [JPZR]
29652
29556
-
SeC
TCA
[ENA]
¡û
>W1750018930
JPZS01000041
Synergistota
Synergistes jonesii [JPZS]
29655
29559
-
SeC
TCA
[ENA]
¡û
>W1750018945
JQEK01000051
Synergistota
Synergistes jonesii [JQEK]
769
673
-
SeC
TCA
[ENA]
¡û
>W1750018948
JQEL01000043
Synergistota
Synergistes jonesii [JQEL]
29649
29553
-
SeC
TCA
[ENA]
¡û
Identical group No.2333 (1 seq.)
>W11138605
AEIV01000002
Synergistota
Aminomonas paucivorans DSM 12260 [AEIV]
42840
42936
+
SeC
TCA
[ENA]
¡û
Identical group No.3213 (1 seq.)
>C122000008
CP003096
Synergistota
Thermovirga lienii DSM 17291 [CP003096]
944919
945015
+
SeC
TCA
[Ensembl]
¡û
Identical group No.5244 (1 seq.)
>W121031626
AHGV01000001
Synergistota
Thermanaerovibrio velox DSM 12556 [AHGV]
826313
826408
+
SeC
TCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK