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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Unclassified
Anticodon = CAC
HIT:
12 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.455543 (18 seq.)
>A171002560
CP002916
Unclassified
Thermoplasmatales archaeon BRNA1 [CP002916]
222254
222179
-
Val
CAC
-
¡û
>A171003546
CP004049
Unclassified
Candidatus Methanomethylophilus alvi Mx1201 [CP004049]
214592
214519
-
Val
CAC
-
¡û
>A171006517
CP014214
Unclassified
methanogenic archaeon ISO4-H5 [CP014214]
1715681
1715756
+
Val
CAC
-
¡û
>WENV180326352
OBKS01058838
[OBKS] human gut metagenome; human gut
416
343
-
Val
CAC
[ENA]
¢þ
>WENV180341583
OBLI01169349
[OBLI] pig gut metagenome; faeces
136
211
+
Val
CAC
[ENA]
¢þ
>WENV180658673
OCVV010789541
[OCVV] gut metagenome; gut
77
2
-
Val
CAC
[ENA]
¢þ
>WENV180658674
OCVV010789541
[OCVV] gut metagenome; gut
77
2
-
Val
CAC
[ENA]
¢þ
>WENV180675068
OCVV011356578
[OCVV] gut metagenome; gut
490
415
-
Val
CAC
[ENA]
¢þ
>WENV180675070
OCVV011356578
[OCVV] gut metagenome; gut
490
415
-
Val
CAC
[ENA]
¢þ
>WENV181607019
OGLM01002726
[OGLM] metagenome; Human gut stool
5159
5086
-
Val
CAC
[ENA]
¢þ
>WENV181655758
OGOB01000972
[OGOB] metagenome; Human gut stool
452
379
-
Val
CAC
[ENA]
¢þ
>WENV181772381
OGRD01002077
[OGRD] human gut metagenome; faeces
1521
1596
+
Val
CAC
[ENA]
¢þ
>WENV182524542
OIWT01000316
[OIWT] human gut metagenome; faeces
65597
65672
+
Val
CAC
[ENA]
¢þ
>WENV183045574
OLGE01015430
[OLGE] human gut metagenome; faeces
734
809
+
Val
CAC
[ENA]
¢þ
>WENV183458434
OMDM01013452
[OMDM] human gut metagenome; feces
117
42
-
Val
CAC
[ENA]
¢þ
>WENV183517567
OMNP01003874
[OMNP] human gut metagenome; feces
2397
2472
+
Val
CAC
[ENA]
¢þ
>W1610011052
AMSE01000005
Unclassified
Methanomethylophilus alvi alvus Mx1201 [AMSE]
94781
94854
+
Val
CAC
[ENA]
¡û
>W1610799764
LOPS01000039
Unclassified
Candidatus Methanomethylophilus sp. 1R26 [LOPS]
1978
1903
-
Val
CAC
[ENA]
¡û
Identical group No.456284 (9 seq.)
>A171003705
CP005934
Unclassified
Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 [CP005934]
1700369
1700442
+
Val
CAC
-
¡û
>WENV180470095
OBYM01060238
[OBYM] human gut metagenome; faeces
415
342
-
Val
CAC
[ENA]
¢þ
>WENV180620143
OCQB01032874
[OCQB] human gut metagenome; human gut
795
722
-
Val
CAC
[ENA]
¢þ
>WENV181036122
ODXP01000249
[ODXP] human metagenome; G_DNA_Stool
63724
63651
-
Val
CAC
[ENA]
¢þ
>WENV181088807
OEBA01005423
[OEBA] human metagenome; G_DNA_Stool
4090
4017
-
Val
CAC
[ENA]
¢þ
>WENV181702057
OGPH01014552
[OGPH] human gut metagenome; faeces
889
962
+
Val
CAC
[ENA]
¢þ
>WENV182058708
OHEP01046135
[OHEP] human gut metagenome; feces
574
501
-
Val
CAC
[ENA]
¢þ
>WENV182082132
OHGK01025696
[OHGK] human gut metagenome; feces
332
259
-
Val
CAC
[ENA]
¢þ
>WENV182193845
OHPB01029563
[OHPB] human gut metagenome; feces
476
549
+
Val
CAC
[ENA]
¢þ
Identical group No.488098 (7 seq.)
>A171003622
CP004145
Unclassified
Ferroplasma acidarmanus Fer1 [CP004145]
696110
696182
+
Val
CAC
-
¡û
>A171006626
CP015363
Unclassified
Ferroplasma acidiphilum Y [CP015363]
1555346
1555418
+
Val
CAC
-
¡û
>W141000044
AADL01001076
Unclassified
mine drainage metagenome Group III [AADL]
1745
1673
-
Val
CAC
[ENA]
¡û
>W141000075
AADL01001500
Unclassified
mine drainage metagenome Group III [AADL]
41702
41630
-
Val
CAC
[ENA]
¡û
>W1610000065
AABC05000010
Unclassified
Ferroplasma acidarmanus fer1 [AABC]
655
727
+
Val
CAC
[ENA]
¡û
>WENV077052
AADL01001076
Acid Mine Drainage microbial communities from Richmond mine
1745
1670
-
Val
CAC
[ENA]
>WENV077083
AADL01001500
Acid Mine Drainage microbial communities from Richmond mine
41702
41627
-
Val
CAC
[ENA]
Identical group No.488115 (5 seq.)
>A171007757
LT671858
Unclassified
Cuniculiplasma divulgatum S5(T) [LT671858]
651208
651134
-
Val
CAC
-
¡û
>A171007794
LT719092
Unclassified
Cuniculiplasma divulgatum PM4 [LT719092]
649817
649744
-
Val
CAC
-
¡û
>W141000144
AADL01002062
Unclassified
mine drainage metagenome Group III [AADL]
2013
2085
+
Val
CAC
[ENA]
¡û
>ENV09002237
ACXJ01011395
Mine drainage metagenome Contig1
11691
11619
-
Val
CAC
[ENA]
¡û
>WENV077152
AADL01002062
Acid Mine Drainage microbial communities from Richmond mine
2013
2088
+
Val
CAC
[ENA]
Identical group No.526077 (5 seq.)
>A171001356
CP001941
Unclassified
Aciduliprofundum boonei T469 [CP001941]
704952
705025
+
Val
CAC
-
¡û
>A171002871
CP003168
Unclassified
Aciduliprofundum sp. MAR08-339 [CP003168]
983857
983929
+
Val
CAC
-
¡û
>W1610000687
ABSD01000048
Unclassified
Candidatus Aciduliprofundum boonei T469 [ABSD]
66846
66771
-
Val
CAC
[ENA]
¡û
>W1610000690
ABSD01000050
Unclassified
Candidatus Aciduliprofundum boonei T469 [ABSD]
183311
183384
+
Val
CAC
[ENA]
¡û
>W1610001706
ADFG01000031
Unclassified
Candidatus Aciduliprofundum boonei T469 [ADFG]
3194
3269
+
Val
CAC
[ENA]
¡û
Identical group No.541357 (2 seq.)
>At2031
BA000011
Unclassified
Thermoplasma volcanium GSS1 [BA000011]
261519
261447
-
Val
CAC
[Ensembl]
¡û
>W1911681180
QJSM01000036
Unclassified
Thermoplasma sp. Kam2015 [QJSM]
88151
88079
-
Val
CAC
[ENA]
¡û
Identical group No.563620 (1 seq.)
>A171000291
CP000968
Unclassified
Candidatus Korarchaeum cryptofilum OPF8 [CP000968]
1005141
1005214
+
Val
CAC
-
¡û
Identical group No.604021 (1 seq.)
>At2005
AL139299
Unclassified
Thermoplasma acidophilum [AL139299]
1389031
1388959
-
Val
CAC
[Ensembl]
¡û
Identical group No.639769 (1 seq.)
>C153000868
CP010424
Unclassified
archaeon GW2011_AR10 [CP010424]
112864
112936
+
Val
CAC
-
¡û
Identical group No.647539 (1 seq.)
>A171005733
CP010070
Unclassified
Candidatus Methanoplasma termitum MpT1 [CP010070]
1128808
1128883
+
Val
CAC
-
¡û
Identical group No.721438 (2 seq.)
>At1734
AE017261
Unclassified
Picrophilus oshimae DSM 9789 DSM 9790 [AE017261]
276155
276226
+
Val
CAC
[Ensembl]
¡û
>W1910469102
FWYE01000005
Unclassified
Picrophilus oshimae DSM 9789 [FWYE]
31390
31462
+
Val
CAC
[ENA]
¡û
Identical group No.835469 (1 seq.)
>C151068558
CP010426
Unclassified
archaeon GW2011_AR20 [CP010426]
302884
302956
+
Val
CAC
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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