This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Unclassified
Anticodon = CGT
HIT:
13 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.256435 (1 seq.)
>A171000306
CP000968
Unclassified
Candidatus Korarchaeum cryptofilum OPF8 [CP000968]
1588786
1588863
+
Thr
CGT
-
¡û
Identical group No.361493 (2 seq.)
>A178000137
CP001941
Unclassified
Aciduliprofundum boonei T469 [CP001941]
1053858
1053988
+
Thr
CGT
-
¡û
>A178000311
CP003168
Unclassified
Aciduliprofundum sp. MAR08-339 [CP003168]
1284008
1284131
+
Thr
CGT
-
¡û
Identical group No.488102 (7 seq.)
>A171003618
CP004145
Unclassified
Ferroplasma acidarmanus Fer1 [CP004145]
414357
414431
+
Thr
CGT
-
¡û
>A171006622
CP015363
Unclassified
Ferroplasma acidiphilum Y [CP015363]
1302235
1302309
+
Thr
CGT
-
¡û
>W141000054
AADL01001146
Unclassified
mine drainage metagenome Group III [AADL]
722
648
-
Thr
CGT
[ENA]
¡û
>W141000079
AADL01001502
Unclassified
mine drainage metagenome Group III [AADL]
35438
35512
+
Thr
CGT
[ENA]
¡û
>W1610000057
AABC05000008
Unclassified
Ferroplasma acidarmanus fer1 [AABC]
177849
177923
+
Thr
CGT
[ENA]
¡û
>WENV077062
AADL01001146
Acid Mine Drainage microbial communities from Richmond mine
722
645
-
Thr
CGT
[ENA]
>WENV077087
AADL01001502
Acid Mine Drainage microbial communities from Richmond mine
35438
35515
+
Thr
CGT
[ENA]
Identical group No.488108 (5 seq.)
>A171007730
LT671858
Unclassified
Cuniculiplasma divulgatum S5(T) [LT671858]
537994
538066
+
Thr
CGT
-
¡û
>A171007767
LT719092
Unclassified
Cuniculiplasma divulgatum PM4 [LT719092]
522269
522341
+
Thr
CGT
-
¡û
>W141000106
AADL01001631
Unclassified
mine drainage metagenome Group III [AADL]
5745
5673
-
Thr
CGT
[ENA]
¡û
>ENV09002151
ACXJ01010543
Mine drainage metagenome Contig1
4514
4586
+
Thr
CGT
[ENA]
¡û
>WENV077114
AADL01001631
Acid Mine Drainage microbial communities from Richmond mine
5745
5670
-
Thr
CGT
[ENA]
Identical group No.507681 (5 seq.)
>At1772
AE017261
Unclassified
Picrophilus oshimae DSM 9789 DSM 9790 [AE017261]
1076462
1076390
-
Thr
CGT
[Ensembl]
¡û
>W1630002064
BBDK01000021
Unclassified
Acidiplasma cupricumulans JCM 13668 [BBDK]
2313
2240
-
Thr
CGT
[ENA]
¡û
>W1630011600
LJCQ01000275
Unclassified
Acidiplasma aeolicum V [LJCQ]
10244
10171
-
Thr
CGT
[ENA]
¡û
>W1630012175
LKBG01000245
Unclassified
Acidiplasma aeolicum VT [LKBG]
8477
8404
-
Thr
CGT
[ENA]
¡û
>W1630012180
LKBH01000015
Unclassified
Acidiplasma cupricumulans BH2 [LKBH]
35357
35430
+
Thr
CGT
[ENA]
¡û
Identical group No.541362 (1 seq.)
>At2043
BA000011
Unclassified
Thermoplasma volcanium GSS1 [BA000011]
1021317
1021245
-
Thr
CGT
[Ensembl]
¡û
Identical group No.604600 (1 seq.)
>At1974
AL139299
Unclassified
Thermoplasma acidophilum [AL139299]
960858
960930
+
Thr
CGT
[Ensembl]
¡û
Identical group No.642382 (1 seq.)
>C153000867
CP010424
Unclassified
archaeon GW2011_AR10 [CP010424]
29124
29196
+
Thr
CGT
-
¡û
Identical group No.655451 (15 seq.)
>A171003528
CP004049
Unclassified
Candidatus Methanomethylophilus alvi Mx1201 [CP004049]
1640147
1640073
-
Thr
CGT
-
¡û
>WENV180326267
OBKS01047541
[OBKS] human gut metagenome; human gut
265
191
-
Thr
CGT
[ENA]
¢þ
>WENV180341517
OBLI01146525
[OBLI] pig gut metagenome; faeces
508
434
-
Thr
CGT
[ENA]
¢þ
>WENV180677583
OCVV011725728
[OCVV] gut metagenome; gut
17
89
+
Thr
CGT
[ENA]
¢þ
>WENV180677584
OCVV011725728
[OCVV] gut metagenome; gut
17
89
+
Thr
CGT
[ENA]
¢þ
>WENV181607333
OGLM01006835
[OGLM] metagenome; Human gut stool
5144
5218
+
Thr
CGT
[ENA]
¢þ
>WENV181655740
OGOB01000876
[OGOB] metagenome; Human gut stool
764
838
+
Thr
CGT
[ENA]
¢þ
>WENV181772618
OGRD01008954
[OGRD] human gut metagenome; faeces
288
214
-
Thr
CGT
[ENA]
¢þ
>WENV182524078
OIWT01000033
[OIWT] human gut metagenome; faeces
93800
93726
-
Thr
CGT
[ENA]
¢þ
>WENV183045366
OLGE01009650
[OLGE] human gut metagenome; faeces
2949
2875
-
Thr
CGT
[ENA]
¢þ
>WENV183382889
OLYL01029014
[OLYL] human gut metagenome; feces
458
384
-
Thr
CGT
[ENA]
¢þ
>WENV183439072
OMCF01029014
[OMCF] human gut metagenome; feces
458
384
-
Thr
CGT
[ENA]
¢þ
>WENV183458299
OMDM01005713
[OMDM] human gut metagenome; feces
1408
1482
+
Thr
CGT
[ENA]
¢þ
>WENV183517928
OMNP01030066
[OMNP] human gut metagenome; feces
110
36
-
Thr
CGT
[ENA]
¢þ
>W1610011055
AMSE01000005
Unclassified
Methanomethylophilus alvi alvus Mx1201 [AMSE]
336021
336095
+
Thr
CGT
[ENA]
¡û
Identical group No.690856 (3 seq.)
>A171006498
CP014214
Unclassified
methanogenic archaeon ISO4-H5 [CP014214]
34364
34436
+
Thr
CGT
-
¡û
>WENV180673037
OCVV011336032
[OCVV] gut metagenome; gut
6417
6345
-
Thr
CGT
[ENA]
¢þ
>WENV180673038
OCVV011336032
[OCVV] gut metagenome; gut
6417
6345
-
Thr
CGT
[ENA]
¢þ
Identical group No.720686 (1 seq.)
>A171002540
CP002916
Unclassified
Thermoplasmatales archaeon BRNA1 [CP002916]
1430398
1430326
-
Thr
CGT
-
¡û
Identical group No.775532 (1 seq.)
>C151068554
CP010426
Unclassified
archaeon GW2011_AR20 [CP010426]
100707
100780
+
Thr
CGT
-
¡û
Identical group No.775788 (1 seq.)
>A171005736
CP010070
Unclassified
Candidatus Methanoplasma termitum MpT1 [CP010070]
1448085
1448011
-
Thr
CGT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK