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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Unclassified
Anticodon = GAC
HIT:
11 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.338091 (4 seq.)
>A171001373
CP001941
Unclassified
Aciduliprofundum boonei T469 [CP001941]
902836
902762
-
Val
GAC
-
¡û
>W1610000680
ABSD01000044
Unclassified
Candidatus Aciduliprofundum boonei T469 [ABSD]
38301
38375
+
Val
GAC
[ENA]
¡û
>W1610000683
ABSD01000046
Unclassified
Candidatus Aciduliprofundum boonei T469 [ABSD]
5911
5987
+
Val
GAC
[ENA]
¡û
>W1610001698
ADFG01000012
Unclassified
Candidatus Aciduliprofundum boonei T469 [ADFG]
34390
34316
-
Val
GAC
[ENA]
¡û
Identical group No.361463 (1 seq.)
>A171002886
CP003168
Unclassified
Aciduliprofundum sp. MAR08-339 [CP003168]
889807
889733
-
Val
GAC
-
¡û
Identical group No.455552 (14 seq.)
>A171003524
CP004049
Unclassified
Candidatus Methanomethylophilus alvi Mx1201 [CP004049]
1523256
1523331
+
Val
GAC
-
¡û
>A171006534
CP014214
Unclassified
methanogenic archaeon ISO4-H5 [CP014214]
130628
130553
-
Val
GAC
-
¡û
>WENV180330646
OBKV01143901
[OBKV] human gut metagenome; human gut
246
171
-
Val
GAC
[ENA]
¢þ
>WENV180669331
OCVV011278979
[OCVV] gut metagenome; gut
3629
3704
+
Val
GAC
[ENA]
¢þ
>WENV180669332
OCVV011278979
[OCVV] gut metagenome; gut
3629
3704
+
Val
GAC
[ENA]
¢þ
>WENV181607354
OGLM01007310
[OGLM] metagenome; Human gut stool
5718
5643
-
Val
GAC
[ENA]
¢þ
>WENV181655679
OGOB01000445
[OGOB] metagenome; Human gut stool
13206
13131
-
Val
GAC
[ENA]
¢þ
>WENV181772524
OGRD01005826
[OGRD] human gut metagenome; faeces
265
340
+
Val
GAC
[ENA]
¢þ
>WENV182524231
OIWT01000083
[OIWT] human gut metagenome; faeces
109026
109101
+
Val
GAC
[ENA]
¢þ
>WENV183045778
OLGE01024932
[OLGE] human gut metagenome; faeces
994
1069
+
Val
GAC
[ENA]
¢þ
>WENV183458212
OMDM01002746
[OMDM] human gut metagenome; feces
2725
2800
+
Val
GAC
[ENA]
¢þ
>WENV183517534
OMNP01002943
[OMNP] human gut metagenome; feces
4954
4879
-
Val
GAC
[ENA]
¢þ
>W1610011073
AMSE01000005
Unclassified
Methanomethylophilus alvi alvus Mx1201 [AMSE]
452912
452837
-
Val
GAC
[ENA]
¡û
>W1610799765
LOPS01000040
Unclassified
Candidatus Methanomethylophilus sp. 1R26 [LOPS]
4197
4272
+
Val
GAC
[ENA]
¡û
Identical group No.456278 (4 seq.)
>A171003690
CP005934
Unclassified
Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 [CP005934]
292056
292129
+
Val
GAC
-
¡û
>WENV181035892
ODXP01000044
[ODXP] human metagenome; G_DNA_Stool
36910
36837
-
Val
GAC
[ENA]
¢þ
>WENV181088644
OEBA01003197
[OEBA] human metagenome; G_DNA_Stool
1745
1672
-
Val
GAC
[ENA]
¢þ
>WENV182212934
OHQG01018475
[OHQG] human gut metagenome; feces
712
785
+
Val
GAC
[ENA]
¢þ
Identical group No.563621 (1 seq.)
>A171000292
CP000968
Unclassified
Candidatus Korarchaeum cryptofilum OPF8 [CP000968]
1009692
1009767
+
Val
GAC
-
¡û
Identical group No.563641 (1 seq.)
>A171002536
CP002916
Unclassified
Thermoplasmatales archaeon BRNA1 [CP002916]
1341541
1341616
+
Val
GAC
-
¡û
Identical group No.647080 (1 seq.)
>C151068563
CP010426
Unclassified
archaeon GW2011_AR20 [CP010426]
174877
174805
-
Val
GAC
-
¡û
Identical group No.647537 (1 seq.)
>A171005729
CP010070
Unclassified
Candidatus Methanoplasma termitum MpT1 [CP010070]
1035433
1035508
+
Val
GAC
-
¡û
Identical group No.664258 (12 seq.)
>A171007762
LT671858
Unclassified
Cuniculiplasma divulgatum S5(T) [LT671858]
178886
178814
-
Val
GAC
-
¡û
>A171007799
LT719092
Unclassified
Cuniculiplasma divulgatum PM4 [LT719092]
158117
158045
-
Val
GAC
-
¡û
>W141000098
AADL01001603
Unclassified
mine drainage metagenome Group III [AADL]
5356
5427
+
Val
GAC
[ENA]
¡û
>W141000111
AADL01001647
Unclassified
mine drainage metagenome Group III [AADL]
15680
15609
-
Val
GAC
[ENA]
¡û
>WENV181292512
OFHE01031356
[OFHE] soil metagenome; Clay
438
366
-
Val
GAC
[ENA]
¢þ
>WENV181295132
OFHI01000775
[OFHI] soil metagenome; Clay
854
782
-
Val
GAC
[ENA]
¢þ
>ENV09001968
ACXJ01002191
Mine drainage metagenome Contig1
912
984
+
Val
GAC
[ENA]
¡û
>ENV09002170
ACXJ01010686
Mine drainage metagenome Contig1
297
226
-
Val
GAC
[ENA]
¡û
>ENV09002231
ACXJ01011373
Mine drainage metagenome Contig1
4433
4360
-
Val
GAC
[ENA]
¡û
>ENV09002273
ACXK01000024
Thermoplasmatales archaeon A-plasma AplasmaContig10144
3416
3344
-
Val
GAC
[ENA]
¡û
>WENV077106
AADL01001603
Acid Mine Drainage microbial communities from Richmond mine
5356
5430
+
Val
GAC
[ENA]
>WENV077119
AADL01001647
Acid Mine Drainage microbial communities from Richmond mine
15680
15606
-
Val
GAC
[ENA]
Identical group No.686233 (7 seq.)
>At1768
AE017261
Unclassified
Picrophilus oshimae DSM 9789 DSM 9790 [AE017261]
851721
851650
-
Val
GAC
[Ensembl]
¡û
>W1910469077
FWYE01000001
Unclassified
Picrophilus oshimae DSM 9789 [FWYE]
125525
125596
+
Val
GAC
[ENA]
¡û
>W1910585078
JYHS01000002
Unclassified
Acidiplasma sp. MBA-1 [JYHS]
311870
311943
+
Val
GAC
[ENA]
¡û
>W1610047585
BBDK01000004
Unclassified
Acidiplasma cupricumulans JCM 13668 [BBDK]
36849
36922
+
Val
GAC
[ENA]
¡û
>W1610642289
LJCQ01000052
Unclassified
Acidiplasma aeolicum V [LJCQ]
3354
3427
+
Val
GAC
[ENA]
¡û
>W1610670453
LKBG01000043
Unclassified
Acidiplasma aeolicum VT [LKBG]
75
2
-
Val
GAC
[ENA]
¡û
>W1610670506
LKBH01000199
Unclassified
Acidiplasma cupricumulans BH2 [LKBH]
95
168
+
Val
GAC
[ENA]
¡û
Identical group No.706842 (3 seq.)
>At1967
AL139299
Unclassified
Thermoplasma acidophilum [AL139299]
384199
384270
+
Val
GAC
[Ensembl]
¡û
>At2036
BA000011
Unclassified
Thermoplasma volcanium GSS1 [BA000011]
415313
415242
-
Val
GAC
[Ensembl]
¡û
>W1911681162
QJSM01000018
Unclassified
Thermoplasma sp. Kam2015 [QJSM]
32855
32928
+
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK