This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Anticodon = AGC
HIT:
10 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.323956 (29 seq.)
>FG090300016
CR382128
Ascomycota
Yarrowia lipolytica CLIB122
11783
11858
+
Ala
AGC
[ENA]
¡û
>FG090300018
CR382129
Ascomycota
Yarrowia lipolytica CLIB122
229163
229238
+
Ala
AGC
[ENA]
¡û
>FG090300019
CR382129
Ascomycota
Yarrowia lipolytica CLIB122
424664
424739
+
Ala
AGC
[ENA]
¡û
>FG090300020
CR382129
Ascomycota
Yarrowia lipolytica CLIB122
869366
869442
+
Ala
AGC
[ENA]
¡û
>FG090300021
CR382129
Ascomycota
Yarrowia lipolytica CLIB122
1707539
1707614
+
Ala
AGC
[ENA]
¡û
>FG090300022
CR382129
Ascomycota
Yarrowia lipolytica CLIB122
1841464
1841537
+
Ala
AGC
[ENA]
¡û
>FG090300023
CR382129
Ascomycota
Yarrowia lipolytica CLIB122
1902478
1902552
+
Ala
AGC
[ENA]
¡û
>FG090300024
CR382129
Ascomycota
Yarrowia lipolytica CLIB122
2429345
2429418
+
Ala
AGC
[ENA]
¡û
>FG090300025
CR382129
Ascomycota
Yarrowia lipolytica CLIB122
2468058
2467983
-
Ala
AGC
[ENA]
¡û
>FG090300026
CR382129
Ascomycota
Yarrowia lipolytica CLIB122
257660
257585
-
Ala
AGC
[ENA]
¡û
>FG090300028
CR382130
Ascomycota
Yarrowia lipolytica CLIB122
1657350
1657424
+
Ala
AGC
[ENA]
¡û
>FG090300030
CR382130
Ascomycota
Yarrowia lipolytica CLIB122
2221410
2221335
-
Ala
AGC
[ENA]
¡û
>FG090300033
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
3412285
3412211
-
Ala
AGC
[ENA]
¡û
>FG090300034
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
2652279
2652204
-
Ala
AGC
[ENA]
¡û
>FG090300035
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
2606702
2606629
-
Ala
AGC
[ENA]
¡û
>FG090300036
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
1493961
1493888
-
Ala
AGC
[ENA]
¡û
>FG090300037
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
845041
844967
-
Ala
AGC
[ENA]
¡û
>FG091300003
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
504695
504768
+
Ala
AGC
[ENA]
¡û
>FG091300005
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
1824964
1824889
-
Ala
AGC
[ENA]
¡û
>FG091300007
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
1348226
1348153
-
Ala
AGC
[ENA]
¡û
>FG091300008
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
1187832
1187759
-
Ala
AGC
[ENA]
¡û
>FG091300009
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
852780
852705
-
Ala
AGC
[ENA]
¡û
>FG091300010
CR382132
Ascomycota
Yarrowia lipolytica CLIB122
2085430
2085503
+
Ala
AGC
[ENA]
¡û
>FG091300011
CR382132
Ascomycota
Yarrowia lipolytica CLIB122
2574843
2574918
+
Ala
AGC
[ENA]
¡û
>FG091300012
CR382132
Ascomycota
Yarrowia lipolytica CLIB122
3038164
3038239
+
Ala
AGC
[ENA]
¡û
>FG091300014
CR382132
Ascomycota
Yarrowia lipolytica CLIB122
2676880
2676807
-
Ala
AGC
[ENA]
¡û
>FG091300015
CR382132
Ascomycota
Yarrowia lipolytica CLIB122
1668579
1668506
-
Ala
AGC
[ENA]
¡û
>FG091300016
CR382132
Ascomycota
Yarrowia lipolytica CLIB122
1451716
1451641
-
Ala
AGC
[ENA]
¡û
>FG091300017
CR382132
Ascomycota
Yarrowia lipolytica CLIB122
1396969
1396894
-
Ala
AGC
[ENA]
¡û
Identical group No.340226 (9 seq.)
>FG090300009
CU329671
Ascomycota
Schizosaccharomyces_pombe_972h-
285675
285750
+
Ala
AGC
[ENA]
¡û
>FG090300010
CU329671
Ascomycota
Schizosaccharomyces_pombe_972h-
1629902
1629976
+
Ala
AGC
[ENA]
¡û
>FG090300011
CU329671
Ascomycota
Schizosaccharomyces_pombe_972h-
1645644
1645570
-
Ala
AGC
[ENA]
¡û
>FG090300012
CU329671
Ascomycota
Schizosaccharomyces_pombe_972h-
1618513
1618439
-
Ala
AGC
[ENA]
¡û
>FG090300013
CU329671
Ascomycota
Schizosaccharomyces_pombe_972h-
1600306
1600232
-
Ala
AGC
[ENA]
¡û
>FG090300014
CU329672
Ascomycota
Schizosaccharomyces_pombe_972h-
1065118
1065043
-
Ala
AGC
[ENA]
¡û
>FG092310001
CU329670
Ascomycota
Schizosaccharomyces_pombe_972h-
3777192
3777265
+
Ala
AGC
[ENA]
¡û
>FG092310002
CU329670
Ascomycota
Schizosaccharomyces_pombe_972h-
3765081
3765008
-
Ala
AGC
[ENA]
¡û
>FG092310003
CU329670
Ascomycota
Schizosaccharomyces_pombe_972h-
934739
934664
-
Ala
AGC
[ENA]
¡û
Identical group No.462567 (7 seq.)
>FG090800039
AE017349
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
81257
81166
-
Ala
AGC
[ENA]
¡û
>FG090800040
AE017349
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
59158
59067
-
Ala
AGC
[ENA]
¡û
>FG090800050
AE017351
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
334687
334593
-
Ala
AGC
[ENA]
¡û
>FG091800005
AE017341
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
848246
848341
+
Ala
AGC
[ENA]
¡û
>FG091800006
AE017341
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
853475
853569
+
Ala
AGC
[ENA]
¡û
>FG091800007
AE017341
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
855458
855550
+
Ala
AGC
[ENA]
¡û
>FG091800021
AE017346
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
1054136
1054042
-
Ala
AGC
[ENA]
¡û
Identical group No.490153 (7 seq.)
>FG090100008
AE016814
Ascomycota
Ashbya gossypii ATCC 10895
368426
368354
-
Ala
AGC
[ENA]
¡û
>FG090100017
AE016815
Ascomycota
Ashbya gossypii ATCC 10895
293177
293103
-
Ala
AGC
[ENA]
¡û
>FG090100055
AE016818
Ascomycota
Ashbya gossypii ATCC 10895
668999
668925
-
Ala
AGC
[ENA]
¡û
>FG090100056
AE016818
Ascomycota
Ashbya gossypii ATCC 10895
608174
608100
-
Ala
AGC
[ENA]
¡û
>FG091100018
AE016817
Ascomycota
Ashbya gossypii ATCC 10895
439587
439661
+
Ala
AGC
[ENA]
¡û
>FG091100023
AE016817
Ascomycota
Ashbya gossypii ATCC 10895
1265934
1266008
+
Ala
AGC
[ENA]
¡û
>FG091100038
AE016819
Ascomycota
Ashbya gossypii ATCC 10895
1029823
1029897
+
Ala
AGC
[ENA]
¡û
Identical group No.490186 (8 seq.)
>WENV170003827
AGTN01463537
[AGTN] bioreactor metagenome; poplar biomass
306
234
-
Ala
AGC
[ENA]
¢þ
>FG090100514
CM000437
Ascomycota
Pichia stipitis CBS 6054
1907897
1907969
+
Ala
AGC
[ENA]
¡û
>FG090100557
CP000498
Ascomycota
Pichia stipitis CBS 6054
1135152
1135080
-
Ala
AGC
[ENA]
¡û
>FG090100570
CP000499
Ascomycota
Pichia stipitis CBS 6054
1094081
1094153
+
Ala
AGC
[ENA]
¡û
>FG091100086
CP000496
Ascomycota
Pichia stipitis CBS 6054
812308
812236
-
Ala
AGC
[ENA]
¡û
>FG091100095
CP000497
Ascomycota
Pichia stipitis CBS 6054
1629368
1629296
-
Ala
AGC
[ENA]
¡û
>FG091100096
CP000497
Ascomycota
Pichia stipitis CBS 6054
1622618
1622546
-
Ala
AGC
[ENA]
¡û
>FG091100098
CP000497
Ascomycota
Pichia stipitis CBS 6054
1351874
1351802
-
Ala
AGC
[ENA]
¡û
Identical group No.528426 (7 seq.)
>FG090100248
CR382134
Ascomycota
Debaryomyces hansenii CBS767
435005
435077
+
Ala
AGC
[ENA]
¡û
>FG090100263
CR382136
Ascomycota
Debaryomyces hansenii CBS767
409360
409432
+
Ala
AGC
[ENA]
¡û
>FG090100297
CR382137
Ascomycota
Debaryomyces hansenii CBS767
1479638
1479564
-
Ala
AGC
[ENA]
¡û
>FG090100311
CR382138
Ascomycota
Debaryomyces hansenii CBS767
196573
196645
+
Ala
AGC
[ENA]
¡û
>FG090100330
CR382139
Ascomycota
Debaryomyces hansenii CBS767
241317
241389
+
Ala
AGC
[ENA]
¡û
>FG091100176
CR382135
Ascomycota
Debaryomyces hansenii CBS767
903420
903492
+
Ala
AGC
[ENA]
¡û
>FG091100178
CR382135
Ascomycota
Debaryomyces hansenii CBS767
1372425
1372497
+
Ala
AGC
[ENA]
¡û
Identical group No.541143 (7 seq.)
>FG090100412
CR382121
Ascomycota
Kluyveromyces lactis NRRL Y-1140
752414
752342
-
Ala
AGC
[ENA]
¡û
>FG090100417
CR382122
Ascomycota
Kluyveromyces lactis NRRL Y-1140
588417
588491
+
Ala
AGC
[ENA]
¡û
>FG090100454
CR382124
Ascomycota
Kluyveromyces lactis NRRL Y-1140
953980
953908
-
Ala
AGC
[ENA]
¡û
>FG090100468
CR382125
Ascomycota
Kluyveromyces lactis NRRL Y-1140
1330784
1330856
+
Ala
AGC
[ENA]
¡û
>FG090100469
CR382125
Ascomycota
Kluyveromyces lactis NRRL Y-1140
1401022
1401094
+
Ala
AGC
[ENA]
¡û
>FG090100477
CR382125
Ascomycota
Kluyveromyces lactis NRRL Y-1140
342649
342575
-
Ala
AGC
[ENA]
¡û
>FG091100105
CR382123
Ascomycota
Kluyveromyces lactis NRRL Y-1140
816018
816090
+
Ala
AGC
[ENA]
¡û
Identical group No.541152 (21 seq.)
>WENV180296074
OBIZ01645960
[OBIZ] soil metagenome; soil
96
168
+
Ala
AGC
[ENA]
¢þ
>WENV170659094
JXWR01000026
[JXWR] soil metagenome; rice field; ambient CO2
2762
2834
+
Ala
AGC
[ENA]
¢þ
>WENV170659242
JXWR01002323
[JXWR] soil metagenome; rice field; ambient CO2
3008
3082
+
Ala
AGC
[ENA]
¢þ
>WENV170659319
JXWR01003315
[JXWR] soil metagenome; rice field; ambient CO2
3114
3042
-
Ala
AGC
[ENA]
¢þ
>WENV170659400
JXWR01004859
[JXWR] soil metagenome; rice field; ambient CO2
2200
2272
+
Ala
AGC
[ENA]
¢þ
>WENV170659518
JXWR01007891
[JXWR] soil metagenome; rice field; ambient CO2
124
196
+
Ala
AGC
[ENA]
¢þ
>WENV170659540
JXWR01008902
[JXWR] soil metagenome; rice field; ambient CO2
1997
2069
+
Ala
AGC
[ENA]
¢þ
>WENV170659592
JXWR01011476
[JXWR] soil metagenome; rice field; ambient CO2
1636
1562
-
Ala
AGC
[ENA]
¢þ
>WENV170659602
JXWR01012958
[JXWR] soil metagenome; rice field; ambient CO2
3621
3547
-
Ala
AGC
[ENA]
¢þ
>WENV170659626
JXWR01015685
[JXWR] soil metagenome; rice field; ambient CO2
4093
4167
+
Ala
AGC
[ENA]
¢þ
>SC0100024
NC_001136
Ascomycota
Saccharomyces cerevisiae S288c
410375
410449
+
Ala
AGC
[ENA]
¡û
>SC0100066
NC_001138
Ascomycota
Saccharomyces cerevisiae S288c
204984
204912
-
Ala
AGC
[ENA]
¡û
>SC0100079
NC_001139
Ascomycota
Saccharomyces cerevisiae S288c
774353
774427
+
Ala
AGC
[ENA]
¡û
>SC0100100
NC_001140
Ascomycota
Saccharomyces cerevisiae S288c
146307
146235
-
Ala
AGC
[ENA]
¡û
>SC0100130
NC_001142
Ascomycota
Saccharomyces cerevisiae S288c
197383
197311
-
Ala
AGC
[ENA]
¡û
>SC0100136
NC_001143
Ascomycota
Saccharomyces cerevisiae S288c
219539
219611
+
Ala
AGC
[ENA]
¡û
>SC0100139
NC_001143
Ascomycota
Saccharomyces cerevisiae S288c
517629
517703
+
Ala
AGC
[ENA]
¡û
>SC0100156
NC_001144
Ascomycota
Saccharomyces cerevisiae S288c
657009
656935
-
Ala
AGC
[ENA]
¡û
>SC0100164
NC_001145
Ascomycota
Saccharomyces cerevisiae S288c
768441
768367
-
Ala
AGC
[ENA]
¡û
>SC0100171
NC_001145
Ascomycota
Saccharomyces cerevisiae S288c
321218
321146
-
Ala
AGC
[ENA]
¡û
>SC0100204
NC_001148
Ascomycota
Saccharomyces cerevisiae S288c
856898
856970
+
Ala
AGC
[ENA]
¡û
Identical group No.554012 (23 seq.)
>WENV182597867
OJJC01002934
[OJJC] metagenome; faeces
329
255
-
Ala
AGC
[ENA]
¢þ
>WENV182629484
OJKS01010645
[OJKS] metagenome; surface
333
407
+
Ala
AGC
[ENA]
¢þ
>WENV170659241
JXWR01002283
[JXWR] soil metagenome; rice field; ambient CO2
8337
8265
-
Ala
AGC
[ENA]
¢þ
>WENV170659244
JXWR01002363
[JXWR] soil metagenome; rice field; ambient CO2
17597
17523
-
Ala
AGC
[ENA]
¢þ
>WENV170659285
JXWR01002732
[JXWR] soil metagenome; rice field; ambient CO2
119
193
+
Ala
AGC
[ENA]
¢þ
>WENV170659401
JXWR01004900
[JXWR] soil metagenome; rice field; ambient CO2
406
478
+
Ala
AGC
[ENA]
¢þ
>WENV170659403
JXWR01004996
[JXWR] soil metagenome; rice field; ambient CO2
169
243
+
Ala
AGC
[ENA]
¢þ
>WENV170659475
JXWR01006340
[JXWR] soil metagenome; rice field; ambient CO2
38
112
+
Ala
AGC
[ENA]
¢þ
>WENV170659476
JXWR01006455
[JXWR] soil metagenome; rice field; ambient CO2
57
131
+
Ala
AGC
[ENA]
¢þ
>WENV170659490
JXWR01006923
[JXWR] soil metagenome; rice field; ambient CO2
377
449
+
Ala
AGC
[ENA]
¢þ
>WENV170659491
JXWR01006932
[JXWR] soil metagenome; rice field; ambient CO2
2296
2224
-
Ala
AGC
[ENA]
¢þ
>WENV170659634
JXWR01017874
[JXWR] soil metagenome; rice field; ambient CO2
135
61
-
Ala
AGC
[ENA]
¢þ
>W1910872239
NDFM01000105
Actinomycetota
Rothia sp. Olga [NDFM]
198
270
+
Ala
AGC
[ENA]
¡û
>FG090100071
CR380947
Ascomycota
Candida glabrata CBS 138 CBS138
218414
218488
+
Ala
AGC
[ENA]
¡û
>FG090100116
CR380952
Ascomycota
Candida glabrata CBS 138 CBS138
471724
471650
-
Ala
AGC
[ENA]
¡û
>FG090100132
CR380954
Ascomycota
Candida glabrata CBS 138 CBS138
238082
238156
+
Ala
AGC
[ENA]
¡û
>FG090100133
CR380954
Ascomycota
Candida glabrata CBS 138 CBS138
250358
250432
+
Ala
AGC
[ENA]
¡û
>FG090100154
CR380955
Ascomycota
Candida glabrata CBS 138 CBS138
958749
958675
-
Ala
AGC
[ENA]
¡û
>FG090100156
CR380955
Ascomycota
Candida glabrata CBS 138 CBS138
949859
949785
-
Ala
AGC
[ENA]
¡û
>FG090100157
CR380955
Ascomycota
Candida glabrata CBS 138 CBS138
875088
875014
-
Ala
AGC
[ENA]
¡û
>FG090100190
CR380957
Ascomycota
Candida glabrata CBS 138 CBS138
303042
302968
-
Ala
AGC
[ENA]
¡û
>FG090100194
CR380958
Ascomycota
Candida glabrata CBS 138 CBS138
181973
182047
+
Ala
AGC
[ENA]
¡û
>FG090100217
CR380959
Ascomycota
Candida glabrata CBS 138 CBS138
756145
756219
+
Ala
AGC
[ENA]
¡û
Identical group No.757495 (1 seq.)
>FG090100376
AL590447
Microsporidia
Encephalitozoon_cuniculi_GB-M1
177782
177853
+
Ala
AGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK