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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Anticodon = CAG
HIT:
11 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.67978 (1 seq.)
>FU090900479
CR382121
Ascomycota
Kluyveromyces lactis NRRL Y-1140
561558
561934
+
Leu
CAG
[ENA]
¡û
Identical group No.75153 (1 seq.)
>FG091900167
AE016817
Ascomycota
Ashbya gossypii ATCC 10895
1280805
1280570
-
Pseudo
CAG
[ENA]
¡û
Identical group No.132937 (2 seq.)
>FG092210001
CU329670
Ascomycota
Schizosaccharomyces_pombe_972h-
1527182
1527087
-
Leu
CAG
[ENA]
¡û
>FG092910003
CU329670
Ascomycota
Schizosaccharomyces_pombe_972h-
1527181
1527088
-
Leu
CAG
[ENA]
¡û
Identical group No.190891 (6 seq.)
>FU090900231
CR382129
Ascomycota
Yarrowia lipolytica CLIB122
694913
695008
+
Leu
CAG
[ENA]
¡û
>FU090900239
CR382129
Ascomycota
Yarrowia lipolytica CLIB122
2468791
2468886
+
Leu
CAG
[ENA]
¡û
>FG091900230
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
606407
606502
+
Leu
CAG
[ENA]
¡û
>FG091900268
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
1287438
1287343
-
Leu
CAG
[ENA]
¡û
>FG091900284
CR382132
Ascomycota
Yarrowia lipolytica CLIB122
1425706
1425801
+
Leu
CAG
[ENA]
¡û
>FG091900298
CR382132
Ascomycota
Yarrowia lipolytica CLIB122
3718938
3718843
-
Leu
CAG
[ENA]
¡û
Identical group No.190892 (5 seq.)
>FU090900198
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
161984
162079
+
Leu
CAG
[ENA]
¡û
>FU090900237
CR382129
Ascomycota
Yarrowia lipolytica CLIB122
1961096
1961191
+
Leu
CAG
[ENA]
¡û
>FU090900238
CR382129
Ascomycota
Yarrowia lipolytica CLIB122
1976222
1976317
+
Leu
CAG
[ENA]
¡û
>FU090900251
CR382129
Ascomycota
Yarrowia lipolytica CLIB122
1833012
1832917
-
Leu
CAG
[ENA]
¡û
>FU090900316
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
1035518
1035423
-
Leu
CAG
[ENA]
¡û
Identical group No.196760 (1 seq.)
>FG090300032
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
3110598
3110679
+
Leu
CAG
[ENA]
¡û
Identical group No.199427 (1 seq.)
>FG090300003
CR382134
Ascomycota
Debaryomyces hansenii CBS767
611162
611246
+
Leu
CAG
[ENA]
¡û
Identical group No.201384 (1 seq.)
>FG091100158
CR382132
Ascomycota
Yarrowia lipolytica CLIB122
3103791
3103708
-
Leu
CAG
[ENA]
¡û
Identical group No.208688 (1 seq.)
>FG090300008
CP000501
Ascomycota
Pichia stipitis CBS 6054
868115
868196
+
Leu
CAG
[ENA]
¡û
Identical group No.226877 (1 seq.)
>FG090100377
AL590447
Microsporidia
Encephalitozoon_cuniculi_GB-M1
113069
112989
-
Leu
CAG
[ENA]
¡û
Identical group No.233552 (1 seq.)
>FU090900053
AE017343
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
1780260
1780174
-
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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