This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Anticodon = CTG
HIT:
14 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.659361 (3 seq.)
>FG090100232
AE017347
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
54419
54490
+
Gln
CTG
[ENA]
¡û
>FG090100233
AE017347
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
64079
64150
+
Gln
CTG
[ENA]
¡û
>FG090100235
AE017348
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
155880
155953
+
Gln
CTG
[ENA]
¡û
Identical group No.675943 (1 seq.)
>FG091100075
CP000496
Ascomycota
Pichia stipitis CBS 6054
2675125
2675052
-
Gln
CTG
[ENA]
¡û
Identical group No.687805 (1 seq.)
>FG090100593
CP000500
Ascomycota
Pichia stipitis CBS 6054
340086
340015
-
Gln
CTG
[ENA]
¡û
Identical group No.687812 (19 seq.)
>FG090200022
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
800624
800708
+
Gln
CTG
[ENA]
¡û
>FG090200025
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
3318694
3318610
-
Gln
CTG
[ENA]
¡û
>FG090500019
CR382130
Ascomycota
Yarrowia lipolytica CLIB122
385087
385171
+
Gln
CTG
[ENA]
¡û
>FG090500028
CR382132
Ascomycota
Yarrowia lipolytica CLIB122
210086
210170
+
Gln
CTG
[ENA]
¡û
>FG090700012
CR382129
Ascomycota
Yarrowia lipolytica CLIB122
1873222
1873136
-
Gln
CTG
[ENA]
¡û
>FG090800125
CR382129
Ascomycota
Yarrowia lipolytica CLIB122
375795
375881
+
Gln
CTG
[ENA]
¡û
>FG090800137
CR382129
Ascomycota
Yarrowia lipolytica CLIB122
1873222
1873136
-
Gln
CTG
[ENA]
¡û
>FG090800168
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
825475
825389
-
Gln
CTG
[ENA]
¡û
>FU090900260
CR382130
Ascomycota
Yarrowia lipolytica CLIB122
385087
385171
+
Gln
CTG
[ENA]
¡û
>FU090900283
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
800624
800708
+
Gln
CTG
[ENA]
¡û
>FU090900306
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
3318694
3318610
-
Gln
CTG
[ENA]
¡û
>FU090900321
CR382132
Ascomycota
Yarrowia lipolytica CLIB122
210086
210170
+
Gln
CTG
[ENA]
¡û
>FG091200016
CR382132
Ascomycota
Yarrowia lipolytica CLIB122
3705120
3705204
+
Gln
CTG
[ENA]
¡û
>FG091500010
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
1428173
1428257
+
Gln
CTG
[ENA]
¡û
>FG091500015
CR382132
Ascomycota
Yarrowia lipolytica CLIB122
1346548
1346462
-
Gln
CTG
[ENA]
¡û
>FG091800033
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
621204
621121
-
Gln
CTG
[ENA]
¡û
>FG091900249
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
1428173
1428257
+
Gln
CTG
[ENA]
¡û
>FG091900293
CR382132
Ascomycota
Yarrowia lipolytica CLIB122
3705120
3705204
+
Gln
CTG
[ENA]
¡û
>FG091900313
CR382132
Ascomycota
Yarrowia lipolytica CLIB122
1346547
1346463
-
Gln
CTG
[ENA]
¡û
Identical group No.698764 (1 seq.)
>FG090100321
CR382138
Ascomycota
Debaryomyces hansenii CBS767
2015272
2015199
-
Gln
CTG
[ENA]
¡û
Identical group No.698766 (2 seq.)
>FG090100604
CU329671
Ascomycota
Schizosaccharomyces_pombe_972h-
257454
257525
+
Gln
CTG
[ENA]
¡û
>FG090100647
CU329671
Ascomycota
Schizosaccharomyces_pombe_972h-
258920
258847
-
Gln
CTG
[ENA]
¡û
Identical group No.706728 (1 seq.)
>FG090100372
AL590446
Microsporidia
Encephalitozoon_cuniculi_GB-M1
201539
201610
+
Gln
CTG
[ENA]
¡û
Identical group No.714658 (4 seq.)
>FU090900007
AE016818
Ascomycota
Ashbya gossypii ATCC 10895
102292
102385
+
Gln
CTG
[ENA]
¡û
>FU090900008
AE016818
Ascomycota
Ashbya gossypii ATCC 10895
103053
103147
+
Gln
CTG
[ENA]
¡û
>FU090900010
AE016818
Ascomycota
Ashbya gossypii ATCC 10895
1486043
1486139
+
Gln
CTG
[ENA]
¡û
>FU090900012
AE016818
Ascomycota
Ashbya gossypii ATCC 10895
102562
102468
-
Gln
CTG
[ENA]
¡û
Identical group No.714661 (2 seq.)
>WENV170659289
JXWR01002955
[JXWR] soil metagenome; rice field; ambient CO2
11936
11861
-
Gln
CTG
[ENA]
¢þ
>SC0100163
NC_001145
Ascomycota
Saccharomyces cerevisiae S288c
808317
808242
-
Gln
CTG
[ENA]
¡û
Identical group No.735068 (2 seq.)
>FG090100117
CR380952
Ascomycota
Candida glabrata CBS 138 CBS138
333460
333387
-
Gln
CTG
[ENA]
¡û
>FG090100166
CR380956
Ascomycota
Candida glabrata CBS 138 CBS138
638509
638436
-
Gln
CTG
[ENA]
¡û
Identical group No.735080 (4 seq.)
>FG090500016
CR382128
Ascomycota
Yarrowia lipolytica CLIB122
956800
956713
-
Gln
CTG
[ENA]
¡û
>FG090800104
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
446953
447039
+
Gln
CTG
[ENA]
¡û
>FU090900225
CR382128
Ascomycota
Yarrowia lipolytica CLIB122
956800
956713
-
Gln
CTG
[ENA]
¡û
>FG091800028
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
446952
447040
+
Gln
CTG
[ENA]
¡û
Identical group No.752685 (1 seq.)
>FG091100139
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
1329856
1329785
-
Gln
CTG
[ENA]
¡û
Identical group No.752688 (1 seq.)
>FG091800040
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
1228440
1228357
-
Gln
CTG
[ENA]
¡û
Identical group No.757500 (1 seq.)
>FU090900134
CR382121
Ascomycota
Kluyveromyces lactis NRRL Y-1140
249975
249870
-
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK