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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Anticodon = GCT
HIT:
13 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.127462 (3 seq.)
>FG090800092
CU329671
Ascomycota
Schizosaccharomyces_pombe_972h-
3350594
3350688
+
Ser
GCT
[ENA]
¡û
>FG090800098
CU329672
Ascomycota
Schizosaccharomyces_pombe_972h-
1253193
1253287
+
Ser
GCT
[ENA]
¡û
>FG090800100
CU329672
Ascomycota
Schizosaccharomyces_pombe_972h-
2072080
2072174
+
Ser
GCT
[ENA]
¡û
Identical group No.187371 (2 seq.)
>FG090800073
CM000437
Ascomycota
Pichia stipitis CBS 6054
2138354
2138446
+
Ser
GCT
[ENA]
¡û
>FG091900220
CP000496
Ascomycota
Pichia stipitis CBS 6054
887438
887347
-
Ser
GCT
[ENA]
¡û
Identical group No.196761 (4 seq.)
>FG090800146
CR382130
Ascomycota
Yarrowia lipolytica CLIB122
1802994
1803089
+
Ser
GCT
[ENA]
¡û
>FG090800162
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
3037735
3037830
+
Ser
GCT
[ENA]
¡û
>FG091800044
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
1435958
1435861
-
Ser
GCT
[ENA]
¡û
>FG091800056
CR382132
Ascomycota
Yarrowia lipolytica CLIB122
2953498
2953593
+
Ser
GCT
[ENA]
¡û
Identical group No.196774 (3 seq.)
>FG090800067
CR382139
Ascomycota
Debaryomyces hansenii CBS767
1635614
1635705
+
Ser
GCT
[ENA]
¡û
>FG090800068
CR382139
Ascomycota
Debaryomyces hansenii CBS767
1861539
1861448
-
Ser
GCT
[ENA]
¡û
>FG091800063
CR382135
Ascomycota
Debaryomyces hansenii CBS767
1030780
1030686
-
Ser
GCT
[ENA]
¡û
Identical group No.199428 (3 seq.)
>FG090800002
AE016818
Ascomycota
Ashbya gossypii ATCC 10895
436360
436459
+
Ser
GCT
[ENA]
¡û
>FG090800003
AE016818
Ascomycota
Ashbya gossypii ATCC 10895
986212
986312
+
Ser
GCT
[ENA]
¡û
>FG091800003
AE016819
Ascomycota
Ashbya gossypii ATCC 10895
731630
731732
+
Ser
GCT
[ENA]
¡û
Identical group No.201381 (1 seq.)
>FG090100385
AL590449
Microsporidia
Encephalitozoon_cuniculi_GB-M1
34328
34410
+
Ser
GCT
[ENA]
¡û
Identical group No.203292 (5 seq.)
>FG090800011
CR380954
Ascomycota
Candida glabrata CBS 138 CBS138
181861
181963
+
Ser
GCT
[ENA]
¡û
>FG090800012
CR380957
Ascomycota
Candida glabrata CBS 138 CBS138
579660
579764
+
Ser
GCT
[ENA]
¡û
>FG090800016
CR380959
Ascomycota
Candida glabrata CBS 138 CBS138
116503
116605
+
Ser
GCT
[ENA]
¡û
>SC0800004
NC_001138
Ascomycota
Saccharomyces cerevisiae S288c
191601
191500
-
Ser
GCT
[ENA]
¡û
>SC0800017
NC_001147
Ascomycota
Saccharomyces cerevisiae S288c
274674
274775
+
Ser
GCT
[ENA]
¡û
Identical group No.205477 (1 seq.)
>FG090800119
CR382128
Ascomycota
Yarrowia lipolytica CLIB122
1186628
1186533
-
Ser
GCT
[ENA]
¡û
Identical group No.210469 (1 seq.)
>FG091800037
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
866417
866512
+
Ser
GCT
[ENA]
¡û
Identical group No.211978 (1 seq.)
>FG091900224
CR382123
Ascomycota
Kluyveromyces lactis NRRL Y-1140
1605044
1604950
-
Ser
GCT
[ENA]
¡û
Identical group No.215896 (1 seq.)
>FU090900146
CR382124
Ascomycota
Kluyveromyces lactis NRRL Y-1140
397066
396972
-
Ser
GCT
[ENA]
¡û
Identical group No.225503 (1 seq.)
>FG091800013
AE017342
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
924355
924246
-
Ser
GCT
[ENA]
¡û
Identical group No.225910 (1 seq.)
>FU090900070
AE017347
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
661424
661319
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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