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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Anticodon = TAT
HIT:
10 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.280946 (1 seq.)
>FG090800069
AL590444
Microsporidia
Encephalitozoon_cuniculi_GB-M1
57467
57581
+
Ile
TAT
[ENA]
¡û
Identical group No.352292 (1 seq.)
>FU090900315
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
1560846
1560724
-
Ile
TAT
[ENA]
¡û
Identical group No.363855 (1 seq.)
>FG092910011
CU329670
Ascomycota
Schizosaccharomyces_pombe_972h-
2578426
2578524
+
Ile
TAT
[ENA]
¡û
Identical group No.424029 (1 seq.)
>FU090900133
CR382121
Ascomycota
Kluyveromyces lactis NRRL Y-1140
385985
385847
-
Ile
TAT
[ENA]
¡û
Identical group No.462483 (2 seq.)
>FG090800010
CR380953
Ascomycota
Candida glabrata CBS 138 CBS138
804376
804519
+
Ile
TAT
[ENA]
¡û
>SC0900071
NC_001144
Ascomycota
Saccharomyces cerevisiae S288c
605434
605302
-
Ile
TAT
[ENA]
¡û
Identical group No.490190 (2 seq.)
>FU090900122
CR382139
Ascomycota
Debaryomyces hansenii CBS767
1188839
1188960
+
Ile
TAT
[ENA]
¡û
>FG091900218
CP000496
Ascomycota
Pichia stipitis CBS 6054
2458058
2458179
+
Ile
TAT
[ENA]
¡û
Identical group No.528433 (1 seq.)
>FU090900116
CR382138
Ascomycota
Debaryomyces hansenii CBS767
1523664
1523543
-
Ile
TAT
[ENA]
¡û
Identical group No.564728 (1 seq.)
>FG091900182
AE016820
Ascomycota
Ashbya gossypii ATCC 10895
529036
529174
+
Ile
TAT
[ENA]
¡û
Identical group No.586974 (2 seq.)
>FG090800009
CR380952
Ascomycota
Candida glabrata CBS 138 CBS138
535673
535530
-
Ile
TAT
[ENA]
¡û
>SC0900051
NC_001136
Ascomycota
Saccharomyces cerevisiae S288c
884358
884490
+
Ile
TAT
[ENA]
¡û
Identical group No.597170 (1 seq.)
>FG091800008
AE017341
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
1511516
1511605
+
Ile
TAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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