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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Anticodon = TTC
HIT:
12 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.659357 (42 seq.)
>WENV180296063
OBIZ01630508
[OBIZ] soil metagenome; soil
137
66
-
Glu
TTC
[ENA]
¢þ
>WENV182597886
OJJC01005208
[OJJC] metagenome; faeces
476
403
-
Glu
TTC
[ENA]
¢þ
>WENV170659121
JXWR01000206
[JXWR] soil metagenome; rice field; ambient CO2
834
763
-
Glu
TTC
[ENA]
¢þ
>WENV170659139
JXWR01000472
[JXWR] soil metagenome; rice field; ambient CO2
10040
9969
-
Glu
TTC
[ENA]
¢þ
>WENV170659163
JXWR01000999
[JXWR] soil metagenome; rice field; ambient CO2
279
208
-
Glu
TTC
[ENA]
¢þ
>WENV170659347
JXWR01003758
[JXWR] soil metagenome; rice field; ambient CO2
2132
2061
-
Glu
TTC
[ENA]
¢þ
>WENV170659355
JXWR01004148
[JXWR] soil metagenome; rice field; ambient CO2
7450
7379
-
Glu
TTC
[ENA]
¢þ
>WENV170659376
JXWR01004753
[JXWR] soil metagenome; rice field; ambient CO2
526
597
+
Glu
TTC
[ENA]
¢þ
>WENV170659451
JXWR01005749
[JXWR] soil metagenome; rice field; ambient CO2
3456
3385
-
Glu
TTC
[ENA]
¢þ
>WENV170659485
JXWR01006780
[JXWR] soil metagenome; rice field; ambient CO2
1204
1275
+
Glu
TTC
[ENA]
¢þ
>WENV170659605
JXWR01013300
[JXWR] soil metagenome; rice field; ambient CO2
1816
1887
+
Glu
TTC
[ENA]
¢þ
>WENV170659628
JXWR01015968
[JXWR] soil metagenome; rice field; ambient CO2
1516
1445
-
Glu
TTC
[ENA]
¢þ
>FG090100121
CR380953
Ascomycota
Candida glabrata CBS 138 CBS138
77742
77815
+
Glu
TTC
[ENA]
¡û
>FG090100135
CR380954
Ascomycota
Candida glabrata CBS 138 CBS138
279537
279608
+
Glu
TTC
[ENA]
¡û
>FG090100139
CR380954
Ascomycota
Candida glabrata CBS 138 CBS138
936320
936247
-
Glu
TTC
[ENA]
¡û
>FG090100182
CR380957
Ascomycota
Candida glabrata CBS 138 CBS138
646893
646964
+
Glu
TTC
[ENA]
¡û
>FG090100207
CR380958
Ascomycota
Candida glabrata CBS 138 CBS138
1028045
1027972
-
Glu
TTC
[ENA]
¡û
>FG090100208
CR380958
Ascomycota
Candida glabrata CBS 138 CBS138
1023038
1022965
-
Glu
TTC
[ENA]
¡û
>FG090100213
CR380958
Ascomycota
Candida glabrata CBS 138 CBS138
210096
210023
-
Glu
TTC
[ENA]
¡û
>FG090100222
CR380959
Ascomycota
Candida glabrata CBS 138 CBS138
845721
845650
-
Glu
TTC
[ENA]
¡û
>FG090100224
CR380959
Ascomycota
Candida glabrata CBS 138 CBS138
783341
783270
-
Glu
TTC
[ENA]
¡û
>FG090100421
CR382122
Ascomycota
Kluyveromyces lactis NRRL Y-1140
915687
915758
+
Glu
TTC
[ENA]
¡û
>FG090100424
CR382122
Ascomycota
Kluyveromyces lactis NRRL Y-1140
1029549
1029478
-
Glu
TTC
[ENA]
¡û
>FG090100430
CR382122
Ascomycota
Kluyveromyces lactis NRRL Y-1140
636782
636711
-
Glu
TTC
[ENA]
¡û
>FG090100473
CR382125
Ascomycota
Kluyveromyces lactis NRRL Y-1140
2119065
2119136
+
Glu
TTC
[ENA]
¡û
>FG090100481
CR382126
Ascomycota
Kluyveromyces lactis NRRL Y-1140
707161
707232
+
Glu
TTC
[ENA]
¡û
>FG090100494
CR382126
Ascomycota
Kluyveromyces lactis NRRL Y-1140
2360887
2360816
-
Glu
TTC
[ENA]
¡û
>SC0100011
NC_001134
Ascomycota
Saccharomyces cerevisiae S288c
645162
645233
+
Glu
TTC
[ENA]
¡û
>SC0100022
NC_001135
Ascomycota
Saccharomyces cerevisiae S288c
82533
82462
-
Glu
TTC
[ENA]
¡û
>SC0100048
NC_001137
Ascomycota
Saccharomyces cerevisiae S288c
177098
177169
+
Glu
TTC
[ENA]
¡û
>SC0100051
NC_001137
Ascomycota
Saccharomyces cerevisiae S288c
354930
355001
+
Glu
TTC
[ENA]
¡û
>SC0100056
NC_001137
Ascomycota
Saccharomyces cerevisiae S288c
487397
487326
-
Glu
TTC
[ENA]
¡û
>SC0100071
NC_001139
Ascomycota
Saccharomyces cerevisiae S288c
328586
328657
+
Glu
TTC
[ENA]
¡û
>SC0100074
NC_001139
Ascomycota
Saccharomyces cerevisiae S288c
541854
541925
+
Glu
TTC
[ENA]
¡û
>SC0100092
NC_001139
Ascomycota
Saccharomyces cerevisiae S288c
401602
401529
-
Glu
TTC
[ENA]
¡û
>SC0100109
NC_001141
Ascomycota
Saccharomyces cerevisiae S288c
370414
370485
+
Glu
TTC
[ENA]
¡û
>SC0100131
NC_001142
Ascomycota
Saccharomyces cerevisiae S288c
116006
115935
-
Glu
TTC
[ENA]
¡û
>SC0100144
NC_001143
Ascomycota
Saccharomyces cerevisiae S288c
141094
141023
-
Glu
TTC
[ENA]
¡û
>SC0100150
NC_001144
Ascomycota
Saccharomyces cerevisiae S288c
797178
797249
+
Glu
TTC
[ENA]
¡û
>SC0100210
NC_001148
Ascomycota
Saccharomyces cerevisiae S288c
210262
210191
-
Glu
TTC
[ENA]
¡û
>FG091100102
CR382123
Ascomycota
Kluyveromyces lactis NRRL Y-1140
489024
489095
+
Glu
TTC
[ENA]
¡û
>FG091100114
CR382123
Ascomycota
Kluyveromyces lactis NRRL Y-1140
475788
475717
-
Glu
TTC
[ENA]
¡û
Identical group No.675935 (3 seq.)
>FG090100006
AE016814
Ascomycota
Ashbya gossypii ATCC 10895
371233
371306
+
Glu
TTC
[ENA]
¡û
>FG091100011
AE016815
Ascomycota
Ashbya gossypii ATCC 10895
483192
483263
+
Glu
TTC
[ENA]
¡û
>FG091100065
AE016820
Ascomycota
Ashbya gossypii ATCC 10895
1144202
1144129
-
Glu
TTC
[ENA]
¡û
Identical group No.675946 (8 seq.)
>FG090100524
CM000437
Ascomycota
Pichia stipitis CBS 6054
2460297
2460226
-
Glu
TTC
[ENA]
¡û
>FG090100551
CP000498
Ascomycota
Pichia stipitis CBS 6054
1298714
1298785
+
Glu
TTC
[ENA]
¡û
>FG090100568
CP000499
Ascomycota
Pichia stipitis CBS 6054
710820
710891
+
Glu
TTC
[ENA]
¡û
>FG090100581
CP000500
Ascomycota
Pichia stipitis CBS 6054
997927
997998
+
Glu
TTC
[ENA]
¡û
>FG090100585
CP000500
Ascomycota
Pichia stipitis CBS 6054
1389569
1389640
+
Glu
TTC
[ENA]
¡û
>FG090100587
CP000500
Ascomycota
Pichia stipitis CBS 6054
1589361
1589290
-
Glu
TTC
[ENA]
¡û
>FG090100592
CP000500
Ascomycota
Pichia stipitis CBS 6054
343651
343580
-
Glu
TTC
[ENA]
¡û
>FG091100082
CP000496
Ascomycota
Pichia stipitis CBS 6054
999706
999635
-
Glu
TTC
[ENA]
¡û
Identical group No.687810 (4 seq.)
>FG090100705
CR382128
Ascomycota
Yarrowia lipolytica CLIB122
1285624
1285553
-
Glu
TTC
[ENA]
¡û
>FG090100728
CR382129
Ascomycota
Yarrowia lipolytica CLIB122
2907947
2908018
+
Glu
TTC
[ENA]
¡û
>FG090100782
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
1775468
1775395
-
Glu
TTC
[ENA]
¡û
>FG091100131
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
1797303
1797374
+
Glu
TTC
[ENA]
¡û
Identical group No.698765 (20 seq.)
>WENV170659098
JXWR01000077
[JXWR] soil metagenome; rice field; ambient CO2
258
329
+
Glu
TTC
[ENA]
¢þ
>WENV170659286
JXWR01002815
[JXWR] soil metagenome; rice field; ambient CO2
1469
1398
-
Glu
TTC
[ENA]
¢þ
>WENV170659337
JXWR01003610
[JXWR] soil metagenome; rice field; ambient CO2
8236
8308
+
Glu
TTC
[ENA]
¢þ
>WENV170659399
JXWR01004836
[JXWR] soil metagenome; rice field; ambient CO2
289
216
-
Glu
TTC
[ENA]
¢þ
>WENV170659450
JXWR01005731
[JXWR] soil metagenome; rice field; ambient CO2
77
150
+
Glu
TTC
[ENA]
¢þ
>WENV170659467
JXWR01006093
[JXWR] soil metagenome; rice field; ambient CO2
2805
2734
-
Glu
TTC
[ENA]
¢þ
>WENV170659488
JXWR01006839
[JXWR] soil metagenome; rice field; ambient CO2
61
133
+
Glu
TTC
[ENA]
¢þ
>WENV170659498
JXWR01007210
[JXWR] soil metagenome; rice field; ambient CO2
6455
6382
-
Glu
TTC
[ENA]
¢þ
>WENV170659512
JXWR01007690
[JXWR] soil metagenome; rice field; ambient CO2
360
433
+
Glu
TTC
[ENA]
¢þ
>WENV170659531
JXWR01008557
[JXWR] soil metagenome; rice field; ambient CO2
3795
3724
-
Glu
TTC
[ENA]
¢þ
>WENV170659632
JXWR01017784
[JXWR] soil metagenome; rice field; ambient CO2
1111
1038
-
Glu
TTC
[ENA]
¢þ
>WENV170659661
JXWR01021721
[JXWR] soil metagenome; rice field; ambient CO2
988
917
-
Glu
TTC
[ENA]
¢þ
>FG090100265
CR382136
Ascomycota
Debaryomyces hansenii CBS767
598710
598781
+
Glu
TTC
[ENA]
¡û
>FG090100267
CR382136
Ascomycota
Debaryomyces hansenii CBS767
640028
639957
-
Glu
TTC
[ENA]
¡û
>FG090100292
CR382137
Ascomycota
Debaryomyces hansenii CBS767
1872321
1872250
-
Glu
TTC
[ENA]
¡û
>FG090100308
CR382137
Ascomycota
Debaryomyces hansenii CBS767
224494
224423
-
Glu
TTC
[ENA]
¡û
>FG090100323
CR382138
Ascomycota
Debaryomyces hansenii CBS767
1915847
1915776
-
Glu
TTC
[ENA]
¡û
>FG090100331
CR382139
Ascomycota
Debaryomyces hansenii CBS767
627053
627126
+
Glu
TTC
[ENA]
¡û
>FG091100181
CR382135
Ascomycota
Debaryomyces hansenii CBS767
1269404
1269333
-
Glu
TTC
[ENA]
¡û
>FG091100195
CR382136
Ascomycota
Debaryomyces hansenii CBS767
1448092
1448021
-
Glu
TTC
[ENA]
¡û
Identical group No.698775 (4 seq.)
>FG090100636
CU329671
Ascomycota
Schizosaccharomyces_pombe_972h-
1646900
1646829
-
Glu
TTC
[ENA]
¡û
>FG090100640
CU329671
Ascomycota
Schizosaccharomyces_pombe_972h-
1601562
1601491
-
Glu
TTC
[ENA]
¡û
>FG092110003
CU329670
Ascomycota
Schizosaccharomyces_pombe_972h-
957183
957254
+
Glu
TTC
[ENA]
¡û
>FG092110036
CU329670
Ascomycota
Schizosaccharomyces_pombe_972h-
718191
718118
-
Glu
TTC
[ENA]
¡û
Identical group No.706759 (3 seq.)
>FU090900084
AE017351
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
206701
206609
-
Glu
TTC
[ENA]
¡û
>FU090900087
AE017352
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
790780
790688
-
Glu
TTC
[ENA]
¡û
>FG091900204
AE017344
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
1322357
1322449
+
Glu
TTC
[ENA]
¡û
Identical group No.714660 (1 seq.)
>SC0100160
NC_001145
Ascomycota
Saccharomyces cerevisiae S288c
290800
290871
+
Glu
TTC
[ENA]
¡û
Identical group No.721381 (1 seq.)
>FG091100149
CR382132
Ascomycota
Yarrowia lipolytica CLIB122
1157106
1157179
+
Glu
TTC
[ENA]
¡û
Identical group No.728026 (1 seq.)
>FG090100394
AL590451
Microsporidia
Encephalitozoon_cuniculi_GB-M1
210542
210613
+
Glu
TTC
[ENA]
¡û
Identical group No.752675 (1 seq.)
>FG090100276
CR382137
Ascomycota
Debaryomyces hansenii CBS767
398574
398645
+
Glu
TTC
[ENA]
¡û
Identical group No.752686 (1 seq.)
>FG091100147
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
474252
474178
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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