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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Anticodon = TTG
HIT:
16 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.675919 (2 seq.)
>FG090500002
AE017343
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
272702
272786
+
Gln
TTG
[ENA]
¡û
>FU090900052
AE017343
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
272703
272784
+
Gln
TTG
[ENA]
¡û
Identical group No.675940 (4 seq.)
>FG090100013
AE016814
Ascomycota
Ashbya gossypii ATCC 10895
137227
137154
-
Gln
TTG
[ENA]
¡û
>FG090100053
AE016818
Ascomycota
Ashbya gossypii ATCC 10895
1171721
1171650
-
Gln
TTG
[ENA]
¡û
>FG091100035
AE016817
Ascomycota
Ashbya gossypii ATCC 10895
486913
486842
-
Gln
TTG
[ENA]
¡û
>FG091100039
AE016819
Ascomycota
Ashbya gossypii ATCC 10895
1071421
1071492
+
Gln
TTG
[ENA]
¡û
Identical group No.675942 (10 seq.)
>FG090100251
CR382134
Ascomycota
Debaryomyces hansenii CBS767
683217
683288
+
Gln
TTG
[ENA]
¡û
>FG090100278
CR382137
Ascomycota
Debaryomyces hansenii CBS767
651374
651445
+
Gln
TTG
[ENA]
¡û
>FG090100282
CR382137
Ascomycota
Debaryomyces hansenii CBS767
991656
991729
+
Gln
TTG
[ENA]
¡û
>FG090100304
CR382137
Ascomycota
Debaryomyces hansenii CBS767
293732
293661
-
Gln
TTG
[ENA]
¡û
>FG090100343
CR382139
Ascomycota
Debaryomyces hansenii CBS767
1722492
1722566
+
Gln
TTG
[ENA]
¡û
>FG090100510
CM000437
Ascomycota
Pichia stipitis CBS 6054
1284436
1284507
+
Gln
TTG
[ENA]
¡û
>FG090100560
CP000498
Ascomycota
Pichia stipitis CBS 6054
865661
865590
-
Gln
TTG
[ENA]
¡û
>FG090100595
CP000501
Ascomycota
Pichia stipitis CBS 6054
118671
118742
+
Gln
TTG
[ENA]
¡û
>FG091100074
CP000496
Ascomycota
Pichia stipitis CBS 6054
2600158
2600229
+
Gln
TTG
[ENA]
¡û
>FG091100189
CR382135
Ascomycota
Debaryomyces hansenii CBS767
561140
561067
-
Gln
TTG
[ENA]
¡û
Identical group No.687802 (9 seq.)
>WENV182597852
OJJC01002087
[OJJC] metagenome; faeces
528
457
-
Gln
TTG
[ENA]
¢þ
>WENV182629401
OJKS01001509
[OJKS] metagenome; surface
1403
1474
+
Gln
TTG
[ENA]
¢þ
>FG090100076
CR380947
Ascomycota
Candida glabrata CBS 138 CBS138
226692
226619
-
Gln
TTG
[ENA]
¡û
>FG090100105
CR380951
Ascomycota
Candida glabrata CBS 138 CBS138
73771
73843
+
Gln
TTG
[ENA]
¡û
>FG090100151
CR380955
Ascomycota
Candida glabrata CBS 138 CBS138
867088
867159
+
Gln
TTG
[ENA]
¡û
>FG090100164
CR380956
Ascomycota
Candida glabrata CBS 138 CBS138
274420
274491
+
Gln
TTG
[ENA]
¡û
>FG090100200
CR380958
Ascomycota
Candida glabrata CBS 138 CBS138
871816
871887
+
Gln
TTG
[ENA]
¡û
>FG090100215
CR380958
Ascomycota
Candida glabrata CBS 138 CBS138
110287
110216
-
Gln
TTG
[ENA]
¡û
>FG091100112
CR382123
Ascomycota
Kluyveromyces lactis NRRL Y-1140
1592204
1592132
-
Gln
TTG
[ENA]
¡û
Identical group No.687814 (2 seq.)
>FG090800135
CR382129
Ascomycota
Yarrowia lipolytica CLIB122
2706742
2706656
-
Gln
TTG
[ENA]
¡û
>FG090800142
CR382129
Ascomycota
Yarrowia lipolytica CLIB122
618438
618352
-
Gln
TTG
[ENA]
¡û
Identical group No.698767 (2 seq.)
>FG090100606
CU329671
Ascomycota
Schizosaccharomyces_pombe_972h-
355920
355991
+
Gln
TTG
[ENA]
¡û
>FG090100648
CU329671
Ascomycota
Schizosaccharomyces_pombe_972h-
257979
257908
-
Gln
TTG
[ENA]
¡û
Identical group No.706734 (5 seq.)
>FG090100402
CR382121
Ascomycota
Kluyveromyces lactis NRRL Y-1140
732629
732700
+
Gln
TTG
[ENA]
¡û
>FG090100444
CR382124
Ascomycota
Kluyveromyces lactis NRRL Y-1140
745312
745383
+
Gln
TTG
[ENA]
¡û
>FG090100452
CR382124
Ascomycota
Kluyveromyces lactis NRRL Y-1140
1492013
1492084
+
Gln
TTG
[ENA]
¡û
>FG090100457
CR382124
Ascomycota
Kluyveromyces lactis NRRL Y-1140
743333
743262
-
Gln
TTG
[ENA]
¡û
>FG090100561
CP000498
Ascomycota
Pichia stipitis CBS 6054
823086
823013
-
Gln
TTG
[ENA]
¡û
Identical group No.706740 (16 seq.)
>WENV170659226
JXWR01001767
[JXWR] soil metagenome; rice field; ambient CO2
5378
5449
+
Gln
TTG
[ENA]
¢þ
>WENV170659299
JXWR01003171
[JXWR] soil metagenome; rice field; ambient CO2
1672
1601
-
Gln
TTG
[ENA]
¢þ
>WENV170659350
JXWR01003862
[JXWR] soil metagenome; rice field; ambient CO2
248
319
+
Gln
TTG
[ENA]
¢þ
>WENV170659351
JXWR01003863
[JXWR] soil metagenome; rice field; ambient CO2
54
125
+
Gln
TTG
[ENA]
¢þ
>WENV170659474
JXWR01006333
[JXWR] soil metagenome; rice field; ambient CO2
244
315
+
Gln
TTG
[ENA]
¢þ
>WENV170659619
JXWR01015347
[JXWR] soil metagenome; rice field; ambient CO2
203
131
-
Gln
TTG
[ENA]
¢þ
>WENV170659766
JXWR01084696
[JXWR] soil metagenome; rice field; ambient CO2
219
148
-
Gln
TTG
[ENA]
¢þ
>SC0100018
NC_001135
Ascomycota
Saccharomyces cerevisiae S288c
168368
168297
-
Gln
TTG
[ENA]
¡û
>SC0100027
NC_001136
Ascomycota
Saccharomyces cerevisiae S288c
520968
521041
+
Gln
TTG
[ENA]
¡û
>SC0100039
NC_001136
Ascomycota
Saccharomyces cerevisiae S288c
802799
802727
-
Gln
TTG
[ENA]
¡û
>SC0100041
NC_001136
Ascomycota
Saccharomyces cerevisiae S288c
645221
645150
-
Gln
TTG
[ENA]
¡û
>SC0100050
NC_001137
Ascomycota
Saccharomyces cerevisiae S288c
250285
250356
+
Gln
TTG
[ENA]
¡û
>SC0100097
NC_001140
Ascomycota
Saccharomyces cerevisiae S288c
134314
134385
+
Gln
TTG
[ENA]
¡û
>SC0100157
NC_001144
Ascomycota
Saccharomyces cerevisiae S288c
448722
448651
-
Gln
TTG
[ENA]
¡û
>W1610158752
FAMN01002263
Bacillota
Clostridioides difficile [FAMN]
117
46
-
Gln
TTG
[ENA]
¡û
>W1710160419
FAMN01002263
Bacillota
Clostridioides difficile [FAMN]
117
46
-
Gln
TTG
[ENA]
¡û
Identical group No.718794 (2 seq.)
>WENV170659460
JXWR01005958
[JXWR] soil metagenome; rice field; ambient CO2
734
661
-
Gln
TTG
[ENA]
¢þ
>SC0100008
NC_001134
Ascomycota
Saccharomyces cerevisiae S288c
350824
350897
+
Gln
TTG
[ENA]
¡û
Identical group No.721376 (1 seq.)
>SC0100063
NC_001137
Ascomycota
Saccharomyces cerevisiae S288c
131154
131081
-
Gln
TTG
[ENA]
¡û
Identical group No.735074 (1 seq.)
>FG090100350
CR382139
Ascomycota
Debaryomyces hansenii CBS767
1427179
1427108
-
Gln
TTG
[ENA]
¡û
Identical group No.735085 (2 seq.)
>FG090700008
CR382128
Ascomycota
Yarrowia lipolytica CLIB122
2550542
2550625
+
Gln
TTG
[ENA]
¡û
>FG090800116
CR382128
Ascomycota
Yarrowia lipolytica CLIB122
2550542
2550625
+
Gln
TTG
[ENA]
¡û
Identical group No.735086 (1 seq.)
>FU090900077
AE017349
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
819632
819529
-
Gln
TTG
[ENA]
¡û
Identical group No.741430 (2 seq.)
>FG090100667
CU329672
Ascomycota
Schizosaccharomyces_pombe_972h-
1863131
1863202
+
Gln
TTG
[ENA]
¡û
>FG090100670
CU329672
Ascomycota
Schizosaccharomyces_pombe_972h-
2075063
2074990
-
Gln
TTG
[ENA]
¡û
Identical group No.745858 (1 seq.)
>FG090100474
CR382125
Ascomycota
Kluyveromyces lactis NRRL Y-1140
1993950
1993879
-
Gln
TTG
[ENA]
¡û
Identical group No.757496 (1 seq.)
>FG090100378
AL590447
Microsporidia
Encephalitozoon_cuniculi_GB-M1
32167
32095
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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