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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Anticodon = TAC
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.280941 (10 seq.)
>R05900013
AP008218
Plant
Oryza sativa Japonica Group
11295690
11295016
-
Val
TAC
[RAP-DB]
¡û
>R05900027
AP008209
Plant
Oryza sativa Japonica Group
32717843
32717169
-
Val
TAC
[RAP-DB]
¡û
>R05900057
AP008212
Plant
Oryza sativa Japonica Group
24468719
24469393
+
Val
TAC
[RAP-DB]
¡û
>R05900079
AP008216
Plant
Oryza sativa Japonica Group
11256292
11255618
-
Val
TAC
[RAP-DB]
¡û
>R05900085
AP008216
Plant
Oryza sativa Japonica Group
20959894
20960568
+
Val
TAC
[RAP-DB]
¡û
>R05900011
AP008218
Plant
Oryza sativa Japonica Group
5618573
5617899
-
Val
TAC
[RAP-DB]
¡û
>CHL090900002
AB042240
Viridiplantae
Triticum aestivum
51828
51157
-
Val
TAC
[ENA]
¡û
>CHL090900031
AE009947
Viridiplantae
Saccharum hybrid cultivar SP-80-3280
115977
115300
-
Val
TAC
[ENA]
¡û
>CHL090900136
AP006714
Viridiplantae
Saccharum officinarum
54350
53673
-
Val
TAC
[ENA]
¡û
>CHL090900403
X15901
Viridiplantae
Oryza sativa Japonica Group
51037
50367
-
Val
TAC
[ENA]
¡û
Identical group No.373645 (1 seq.)
>R05900055
AP008212
Plant
Oryza sativa Japonica Group
12812950
12813621
+
Val
TAC
[RAP-DB]
¡û
Identical group No.541256 (4 seq.)
>R05100019
AP008207
Plant
Oryza sativa Japonica Group
31837560
31837635
+
Val
TAC
[RAP-DB]
¡û
>R05100336
AP008210
Plant
Oryza sativa Japonica Group
29202699
29202624
-
Val
TAC
[RAP-DB]
¡û
>R05100397
AP008211
Plant
Oryza sativa Japonica Group
29457158
29457083
-
Val
TAC
[RAP-DB]
¡û
>R05100399
AP008211
Plant
Oryza sativa Japonica Group
26532972
26532897
-
Val
TAC
[RAP-DB]
¡û
Identical group No.541264 (1 seq.)
>AD01000327
NC_003075
Plant
Arabidopsis thaliana
9191576
9191648
+
Val
TAC
[TAIR]
¡û
Identical group No.587029 (5 seq.)
>AD01000001
NC_003070
Plant
Arabidopsis thaliana
306384
306456
+
Val
TAC
[TAIR]
¡û
>AD01000158
NC_003071
Plant
Arabidopsis thaliana
1154385
1154457
+
Val
TAC
[TAIR]
¡û
>AD01000214
NC_003071
Plant
Arabidopsis thaliana
12638228
12638156
-
Val
TAC
[TAIR]
¡û
>AD01000240
NC_003074
Plant
Arabidopsis thaliana
2222245
2222319
+
Val
TAC
[TAIR]
¡û
>AD01000450
NC_003076
Plant
Arabidopsis thaliana
17877752
17877680
-
Val
TAC
[TAIR]
¡û
Identical group No.587040 (1 seq.)
>AD01000270
NC_003074
Plant
Arabidopsis thaliana
18896871
18896943
+
Val
TAC
[TAIR]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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