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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
56 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV170315957
CESP01001688
139505
Bacteroidota
TAC
Val
>WENV170316012
CESP01006360
18750
Bacteroidota
GGA
Ser
>WENV170316051
CESP01009236
177164
Bacteroidota
GTC
Asp
>WENV170316056
CESP01009990
177853
Bacteroidota
GAT
Ile
>WENV170316088
CESP01012733
138967
Bacteroidota
TGG
Pro
>WENV170316122
CESP01014507
68352
Bacteroidota
GCT
Ser
>WENV170316130
CESP01015771
106218
Bacteroidota
CAA
Leu
>WENV170316131
CESP01016061
266737
Bacteroidota
TTT
Lys
>WENV170316138
CESP01017299
68352
Bacteroidota
GCT
Ser
>WENV170316207
CESP01023423
139231
Bacteroidota
GAC
Val
>WENV170316256
CESP01026764
138908
Bacteroidota
TGG
Pro
>WENV170316309
CESP01030422
144149
Bacteroidota
TGG
Pro
>WENV170316337
CESP01033041
88896
Bacteroidota
GTA
Tyr
>WENV170316373
CESP01035882
265540
Bacteroidota
GAA
Phe
>WENV170316423
CESP01041262
144149
Bacteroidota
TGG
Pro
>WENV170316448
CESP01043963
260563
Bacteroidota
>WENV170316466
CESP01045857
50342
Bacteroidota
TGA
Ser
>WENV170316473
CESP01046570
18750
Bacteroidota
GGA
Ser
>WENV170316490
CESP01047485
188048
Bacteroidota
GGC
Ala
>WENV170316505
CESP01049084
265540
Bacteroidota
GAA
Phe
>WENV170316552
CESP01054551
51705
Bacteroidota
TGA
Ser
>WENV170316562
CESP01055817
160351
Bacteroidota
TCT
Arg
>WENV170316613
CESP01062166
175653
Bacteroidota
TGC
Ala
>WENV170316627
CESP01063674
50342
Bacteroidota
TGA
Ser
>WENV170316728
CESP01073788
188048
Bacteroidota
GGC
Ala
>WENV170316858
CESP01088537
265540
Bacteroidota
GAA
Phe
>WENV170316859
CESP01088611
300647
Bacteroidota
TTT
Lys
>WENV170316868
CESP01089189
50342
Bacteroidota
TGA
Ser
>WENV170316873
CESP01089904
160133
Bacteroidota
TCG
Arg
>WENV170316909
CESP01093573
139133
Bacteroidota
GGG
Pro
>WENV170316945
CESP01098499
268445
Bacteroidota
GAA
Phe
>WENV170316999
CESP01103304
89123
Bacteroidota
GCT
Ser
>WENV170317127
CESP01118316
144149
Bacteroidota
TGG
Pro
>WENV170317136
CESP01118714
188048
Bacteroidota
GGC
Ala
>WENV170317147
CESP01120954
144149
Bacteroidota
TGG
Pro
>WENV170317170
CESP01122726
20703
Bacteroidota
GGA
Ser
>WENV170317218
CESP01130150
266737
Bacteroidota
TTT
Lys
>WENV170317256
CESP01136684
50342
Bacteroidota
TGA
Ser
>WENV170317303
CESP01141933
188006
Bacteroidota
TCT
Arg
>WENV170317310
CESP01142281
168483
Bacteroidota
GTT
Asn
>WENV170317343
CESP01147179
160349
Bacteroidota
GTG
His
>WENV170317362
CESP01150263
177164
Bacteroidota
GTC
Asp
>WENV170317379
CESP01151352
139231
Bacteroidota
GAC
Val
>WENV170317385
CESP01151617
139505
Bacteroidota
TAC
Val
>WENV170317440
CESP01156574
19592
Bacteroidota
GGA
Ser
>WENV170317456
CESP01158299
448855
Bacteroidota
GCA
Cys
>WENV170317478
CESP01159862
163712
Bacteroidota
GGC
Ala
>WENV170317494
CESP01160638
265540
Bacteroidota
GAA
Phe
>WENV170317510
CESP01161457
108353
Bacteroidota
TAG
Leu
>WENV170317549
CESP01163625
188048
Bacteroidota
GGC
Ala
>WENV170317564
CESP01163914
50353
Bacteroidota
TGA
Ser
>WENV170317629
CESP01166063
161475
Bacteroidota
TCG
Arg
>WENV170317633
CESP01166107
277731
Bacteroidota
>WENV170317684
CESP01177596
189987
Bacteroidota
TCT
Arg
>WENV170317839
CESP01264769
262571
Bacteroidota
GCC
Gly
>WENV170317861
CESP01272984
160349
Bacteroidota
GTG
His
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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