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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
94 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>SRA1032562
SRR035088.47530
236662
Chlorobiota
GGT
Thr
>SRA1032626
SRR035088.66700
236662
Chlorobiota
GGT
Thr
>SRA1032721
SRR035088.86779
236662
Chlorobiota
GGT
Thr
>SRA1032863
SRR035088.118389
236662
Chlorobiota
GGT
Thr
>SRA1033010
SRR035088.151199
236662
Chlorobiota
GGT
Thr
>SRA1032581
SRR035088.53787
146381
Chlorobiota
CAT
Met
>SRA1032746
SRR035088.93400
146381
Chlorobiota
CAT
Met
>SRA1033281
SRR035088.213415
146381
Chlorobiota
CAT
Met
>SRA1033460
SRR035088.263752
146381
Chlorobiota
CAT
Met
>SRA1033823
SRR035088.366605
146381
Chlorobiota
CAT
Met
>SRA1032625
SRR035088.66700
80756
Chlorobiota
GTA
Tyr
>SRA1032720
SRR035088.86779
80756
Chlorobiota
GTA
Tyr
>SRA1032862
SRR035088.118389
80756
Chlorobiota
GTA
Tyr
>SRA1032881
SRR035088.121271
80756
Chlorobiota
GTA
Tyr
>SRA1032993
SRR035088.146051
80756
Chlorobiota
GTA
Tyr
>SRA1033009
SRR035088.151199
80756
Chlorobiota
GTA
Tyr
>SRA1033433
SRR035088.256733
80756
Chlorobiota
GTA
Tyr
>SRA1032833
SRR035088.111646
238645
Chlorobiota
GGC
Ala
>SRA1033020
SRR035088.153038
238645
Chlorobiota
GGC
Ala
>SRA1033631
SRR035088.308389
238645
Chlorobiota
GGC
Ala
>SRA1032491
SRR035088.25517
236753
Chlorobiota
TGG
Pro
>SRA1032549
SRR035088.44577
236753
Chlorobiota
TGG
Pro
>SRA1033202
SRR035088.196259
236753
Chlorobiota
TGG
Pro
>SRA1033298
SRR035088.218076
236753
Chlorobiota
TGG
Pro
>SRA1033701
SRR035088.329344
236753
Chlorobiota
TGG
Pro
>SRA1033798
SRR035088.358674
236833
Chlorobiota
CGT
Thr
>SRA1034137
SRR035088.505202
236833
Chlorobiota
CGT
Thr
>SRA1032741
SRR035088.92517
236833
Chlorobiota
CGT
Thr
>SRA1032779
SRR035088.102269
236833
Chlorobiota
CGT
Thr
>SRA1033254
SRR035088.207893
236833
Chlorobiota
CGT
Thr
>SRA1032702
SRR035088.82323
146232
Chlorobiota
GGG
Pro
>SRA1032787
SRR035088.103157
146232
Chlorobiota
GGG
Pro
>SRA1032989
SRR035088.145383
146232
Chlorobiota
GGG
Pro
>SRA1033469
SRR035088.266911
146232
Chlorobiota
GGG
Pro
>SRA1033735
SRR035088.340195
146232
Chlorobiota
GGG
Pro
>SRA1033774
SRR035088.350936
146232
Chlorobiota
GGG
Pro
>SRA1033996
SRR035088.438391
146232
Chlorobiota
GGG
Pro
>SRA1032509
SRR035088.31138
236741
Chlorobiota
CCG
Arg
>SRA1032724
SRR035088.87553
236741
Chlorobiota
CCG
Arg
>SRA1032770
SRR035088.99672
236741
Chlorobiota
CCG
Arg
>SRA1033789
SRR035088.355741
236741
Chlorobiota
CCG
Arg
>SRA1032660
SRR035088.74569
236933
Chlorobiota
CCC
Gly
>SRA1032921
SRR035088.129455
236933
Chlorobiota
CCC
Gly
>SRA1033461
SRR035088.263752
236933
Chlorobiota
CCC
Gly
>SRA1032485
SRR035088.23785
237026
Chlorobiota
CGG
Pro
>SRA1032725
SRR035088.87553
237026
Chlorobiota
CGG
Pro
>SRA1032969
SRR035088.141594
237026
Chlorobiota
CGG
Pro
>SRA1032868
SRR035088.119142
95795
Chlorobiota
CAG
Leu
>SRA1032892
SRR035088.123751
95795
Chlorobiota
CAG
Leu
>SRA1033513
SRR035088.276487
95795
Chlorobiota
CAG
Leu
>SRA1033546
SRR035088.285269
95795
Chlorobiota
CAG
Leu
>SRA1032571
SRR035088.50588
339069
Chlorobiota
TTG
Gln
>SRA1032586
SRR035088.54093
339069
Chlorobiota
TTG
Gln
>SRA1032706
SRR035088.83417
339069
Chlorobiota
TTG
Gln
>SRA1032916
SRR035088.128642
339069
Chlorobiota
TTG
Gln
>SRA1033534
SRR035088.280919
339069
Chlorobiota
TTG
Gln
>SRA1032782
SRR035088.102627
236827
Chlorobiota
TTT
Lys
>SRA1032445
SRR035088.11319
236827
Chlorobiota
TTT
Lys
>SRA1032798
SRR035088.105314
236827
Chlorobiota
TTT
Lys
>SRA1033477
SRR035088.268972
236827
Chlorobiota
TTT
Lys
>SRA1033828
SRR035088.367893
236827
Chlorobiota
TTT
Lys
>SRA1032606
SRR035088.61214
126816
Chlorobiota
GTC
Asp
>SRA1032704
SRR035088.82623
126816
Chlorobiota
GTC
Asp
>SRA1032803
SRR035088.106465
126816
Chlorobiota
GTC
Asp
>SRA1033033
SRR035088.155693
126816
Chlorobiota
GTC
Asp
>SRA1033118
SRR035088.178281
126816
Chlorobiota
GTC
Asp
>SRA1033341
SRR035088.230067
126816
Chlorobiota
GTC
Asp
>SRA1032446
SRR035088.11319
95811
Chlorobiota
GAG
Leu
>SRA1032783
SRR035088.102627
95811
Chlorobiota
GAG
Leu
>SRA1033093
SRR035088.171443
95811
Chlorobiota
GAG
Leu
>SRA1033974
SRR035088.427630
95811
Chlorobiota
GAG
Leu
>SRA1032437
SRR035088.9911
146165
Chlorobiota
GTG
His
>SRA1032846
SRR035088.113989
146165
Chlorobiota
GTG
His
>SRA1033204
SRR035088.196259
146165
Chlorobiota
GTG
His
>SRA1033361
SRR035088.234789
146165
Chlorobiota
GTG
His
>SRA1034094
SRR035088.484115
146165
Chlorobiota
GTG
His
>SRA1032605
SRR035088.61014
236663
Chlorobiota
CCA
Trp
>SRA1032627
SRR035088.66700
236663
Chlorobiota
CCA
Trp
>SRA1033140
SRR035088.181604
236663
Chlorobiota
CCA
Trp
>SRA1033381
SRR035088.240934
236663
Chlorobiota
CCA
Trp
>SRA1033842
SRR035088.373227
236663
Chlorobiota
CCA
Trp
>SRA1032793
SRR035088.103985
146283
Chlorobiota
TAC
Val
>SRA1033431
SRR035088.255967
146283
Chlorobiota
TAC
Val
>SRA1033521
SRR035088.277667
146283
Chlorobiota
TAC
Val
>SRA1033740
SRR035088.341269
146283
Chlorobiota
TAC
Val
>SRA1033921
SRR035088.408059
146283
Chlorobiota
TAC
Val
>SRA1034077
SRR035088.476728
146283
Chlorobiota
TAC
Val
>SRA1034084
SRR035088.481203
146283
Chlorobiota
TAC
Val
>SRA1032914
SRR035088.128587
235782
Chlorobiota
CAT
Met
>SRA1033011
SRR035088.151289
235782
Chlorobiota
CAT
Met
>SRA1032657
SRR035088.74129
236974
Chlorobiota
TGC
Ala
>SRA1032693
SRR035088.80317
236974
Chlorobiota
TGC
Ala
>SRA1032797
SRR035088.105233
236974
Chlorobiota
TGC
Ala
>SRA1033297
SRR035088.217448
236974
Chlorobiota
TGC
Ala
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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