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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
47 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>SRA1036340
SRR035089.498190
236662
Chlorobiota
GGT
Thr
>SRA1036591
SRR035089.556216
236662
Chlorobiota
GGT
Thr
>SRA1035402
SRR035089.298918
146381
Chlorobiota
CAT
Met
>SRA1035694
SRR035089.356123
146381
Chlorobiota
CAT
Met
>SRA1034203
SRR035089.22523
80756
Chlorobiota
GTA
Tyr
>SRA1035266
SRR035089.270799
80756
Chlorobiota
GTA
Tyr
>SRA1036339
SRR035089.498190
80756
Chlorobiota
GTA
Tyr
>SRA1034314
SRR035089.54866
236753
Chlorobiota
TGG
Pro
>SRA1035691
SRR035089.355870
236753
Chlorobiota
TGG
Pro
>SRA1034734
SRR035089.162846
236833
Chlorobiota
CGT
Thr
>SRA1034824
SRR035089.180735
236833
Chlorobiota
CGT
Thr
>SRA1035342
SRR035089.286805
236833
Chlorobiota
CGT
Thr
>SRA1034439
SRR035089.96474
146232
Chlorobiota
GGG
Pro
>SRA1034936
SRR035089.202694
146232
Chlorobiota
GGG
Pro
>SRA1036134
SRR035089.452115
146232
Chlorobiota
GGG
Pro
>SRA1034236
SRR035089.32247
236741
Chlorobiota
CCG
Arg
>SRA1036151
SRR035089.456956
236741
Chlorobiota
CCG
Arg
>SRA1035403
SRR035089.298918
236933
Chlorobiota
CCC
Gly
>SRA1035695
SRR035089.356123
236933
Chlorobiota
CCC
Gly
>SRA1036152
SRR035089.456956
237026
Chlorobiota
CGG
Pro
>SRA1034262
SRR035089.39790
95795
Chlorobiota
CAG
Leu
>SRA1035625
SRR035089.342675
95795
Chlorobiota
CAG
Leu
>SRA1036473
SRR035089.530336
95795
Chlorobiota
CAG
Leu
>SRA1034376
SRR035089.72639
339069
Chlorobiota
TTG
Gln
>SRA1036496
SRR035089.533230
339069
Chlorobiota
TTG
Gln
>SRA1034699
SRR035089.155639
236827
Chlorobiota
TTT
Lys
>SRA1035006
SRR035089.217438
236827
Chlorobiota
TTT
Lys
>SRA1035095
SRR035089.237058
236827
Chlorobiota
TTT
Lys
>SRA1035626
SRR035089.342769
236827
Chlorobiota
TTT
Lys
>SRA1034527
SRR035089.116170
126816
Chlorobiota
GTC
Asp
>SRA1034615
SRR035089.137419
126816
Chlorobiota
GTC
Asp
>SRA1034642
SRR035089.142754
126816
Chlorobiota
GTC
Asp
>SRA1034767
SRR035089.169206
126816
Chlorobiota
GTC
Asp
>SRA1035029
SRR035089.222057
126816
Chlorobiota
GTC
Asp
>SRA1036037
SRR035089.431527
126816
Chlorobiota
GTC
Asp
>SRA1034700
SRR035089.155639
95811
Chlorobiota
GAG
Leu
>SRA1035007
SRR035089.217438
95811
Chlorobiota
GAG
Leu
>SRA1035096
SRR035089.237058
95811
Chlorobiota
GAG
Leu
>SRA1035627
SRR035089.342769
95811
Chlorobiota
GAG
Leu
>SRA1035693
SRR035089.355870
146165
Chlorobiota
GTG
His
>SRA1035619
SRR035089.341578
236663
Chlorobiota
CCA
Trp
>SRA1035944
SRR035089.411123
236663
Chlorobiota
CCA
Trp
>SRA1036592
SRR035089.556216
236663
Chlorobiota
CCA
Trp
>SRA1034808
SRR035089.177869
146283
Chlorobiota
TAC
Val
>SRA1035348
SRR035089.287863
146283
Chlorobiota
TAC
Val
>SRA1035182
SRR035089.255324
235782
Chlorobiota
CAT
Met
>SRA1035641
SRR035089.347245
236974
Chlorobiota
TGC
Ala
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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