tRNA genes clustered and arranged according to each identical group

454 Sequencing (SRP001806)

Anticodon = CAC

HIT: 22 Group(s).
Download Sequence Representative sequence of each cluster
View ClustalW result
Sort by Identical group No. Sort by the number of tRNAs in the Identical group
Select
Sequence ID Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Identical group No.240831 (1 seq.)
>SRA1026592 SRR035085.234580 454 Sequencing (SRP001806) 241 318 + Val CAC [SRA]
Identical group No.272271 (2 seq.)
>SRA1018242 SRR035082.260455 454 Sequencing (SRP001803) 196 270 + Val CAC [SRA]
>SRA1025597 SRR035085.45080 454 Sequencing (SRP001806) 177 251 + Val CAC [SRA]
Identical group No.272274 (1 seq.)
>SRA1025612 SRR035085.49668 454 Sequencing (SRP001806) 273 200 - Val CAC [SRA]
Identical group No.272279 (15 seq.)
>W131157573 AQSK01000215 candidate division KSB1 candidate division KSB1 bacterium SCGC AAA252-E13 [AQSK] 48090 48014 - Val CAC [ENA]
>W131157603 AQSM01000035 candidate division KSB1 candidate division KSB1 bacterium SCGC AAA252-N14 [AQSM] 1139 1063 - Val CAC [ENA]
>W131192161 ASKQ01000005 candidate division KSB1 candidate division KSB1 bacterium SCGC AAA252-O17 [ASKQ] 30148 30072 - Val CAC [ENA]
>W131192938 ASNH01000020 candidate division KSB1 candidate division KSB1 bacterium SCGC AAA255-C20 [ASNH] 15183 15259 + Val CAC [ENA]
>W131192970 ASNI01000010 candidate division KSB1 candidate division KSB1 bacterium SCGC AAA252-N17 [ASNI] 37508 37584 + Val CAC [ENA]
>W131193001 ASNJ01000005 candidate division KSB1 candidate division KSB1 bacterium SCGC AAA252-N11 [ASNJ] 19186 19262 + Val CAC [ENA]
>W131193036 ASNK01000066 candidate division KSB1 candidate division KSB1 bacterium SCGC AAA252-E20 [ASNK] 7134 7210 + Val CAC [ENA]
>W131193078 ASNN01000009 candidate division KSB1 candidate division KSB1 bacterium SCGC AAA252-I11 [ASNN] 48001 47925 - Val CAC [ENA]
>W131193136 ASNQ01000013 candidate division KSB1 candidate division KSB1 bacterium SCGC AAA252-K16 [ASNQ] 20974 21050 + Val CAC [ENA]
>W141139670 AWNX01000001 Cloacimonetes Cloacimonetes bacterium JGI OTU-1 [AWNX] 112130 112206 + Val CAC [ENA]
>WENV170624789 FUWD013186862 [FUWD] metagenome; unknown 2112 2036 - Val CAC [ENA]
>WENV170633063 FUWD013390849 [FUWD] metagenome; unknown 2112 2036 - Val CAC [ENA]
>SRA1025634 SRR035085.53809 454 Sequencing (SRP001806) 241 317 + Val CAC [SRA]
>SRA1025981 SRR035085.120607 454 Sequencing (SRP001806) 241 317 + Val CAC [SRA]
>SRA1035602 SRR035089.338607 454 Sequencing (SRP001810) 260 336 + Val CAC [SRA]
Identical group No.272329 (5 seq.)
>WENV170602327 FUWD010226440 [FUWD] metagenome; unknown 724 648 - Val CAC [ENA]
>WENV170618985 FUWD012994926 [FUWD] metagenome; unknown 402 326 - Val CAC [ENA]
>SRA1017930 SRR035082.215318 454 Sequencing (SRP001803) 483 407 - Val CAC [SRA]
>SRA1025910 SRR035085.107075 454 Sequencing (SRP001806) 410 334 - Val CAC [SRA]
>SRA1026696 SRR035085.262226 454 Sequencing (SRP001806) 188 112 - Val CAC [SRA]
Identical group No.272348 (1 seq.)
>SRA1026045 SRR035085.132102 454 Sequencing (SRP001806) 150 77 - Val CAC [SRA]
Identical group No.272380 (1 seq.)
>SRA1026256 SRR035085.173021 454 Sequencing (SRP001806) 109 183 + Val CAC [SRA]
Identical group No.272404 (2 seq.)
>WENV170694378 LGVD01042535 [LGVD] marine sediment metagenome; sample #3730, Push core (PC) 16 from cruise R/V Atlantis leg AT-15-68, Alvin dive 4635 at 1747 1821 + Val CAC [ENA]
>SRA1026412 SRR035085.203224 454 Sequencing (SRP001806) 254 180 - Val CAC [SRA]
Identical group No.272415 (8 seq.)
>WENV170625894 FUWD013208601 [FUWD] metagenome; unknown 1390 1464 + Val CAC [ENA]
>WENV170628987 FUWD013258108 [FUWD] metagenome; unknown 14190 14116 - Val CAC [ENA]
>SRA1026474 SRR035085.213315 454 Sequencing (SRP001806) 383 309 - Val CAC [SRA]
>SRA1040572 SRR035091.117064 454 Sequencing (SRP001812) 174 248 + Val CAC [SRA]
>SRA1042011 SRR035091.327813 454 Sequencing (SRP001812) 186 112 - Val CAC [SRA]
>SRA1043003 SRR035092.19228 454 Sequencing (SRP001813) 282 356 + Val CAC [SRA]
>SRA1044554 SRR035092.300545 454 Sequencing (SRP001813) 202 126 - Val CAC [SRA]
>SRA1047658 SRR035094.13503 454 Sequencing (SRP001815) 501 427 - Val CAC [SRA]
Identical group No.272423 (1 seq.)
>SRA1026497 SRR035085.216785 454 Sequencing (SRP001806) 316 243 - Val CAC [SRA]
Identical group No.272450 (1 seq.)
>SRA1026646 SRR035085.249047 454 Sequencing (SRP001806) 50 126 + Val CAC [SRA]
Identical group No.272456 (8 seq.)
>WENV170611528 FUWD012341016 [FUWD] metagenome; unknown 499 423 - Val CAC [ENA]
>WENV170623299 FUWD013145083 [FUWD] metagenome; unknown 1046 1120 + Val CAC [ENA]
>WENV170631560 FUWD013357062 [FUWD] metagenome; unknown 364 290 - Val CAC [ENA]
>SRA1026668 SRR035085.254263 454 Sequencing (SRP001806) 305 229 - Val CAC [SRA]
>SRA1035814 SRR035089.380834 454 Sequencing (SRP001810) 364 290 - Val CAC [SRA]
>SRA1040580 SRR035091.118543 454 Sequencing (SRP001812) 283 359 + Val CAC [SRA]
>SRA1041815 SRR035091.298278 454 Sequencing (SRP001812) 17 91 + Val CAC [SRA]
>SRA1049211 SRR035095.38768 454 Sequencing (SRP001816) 23 97 + Val CAC [SRA]
Identical group No.272476 (1 seq.)
>SRA1026750 SRR035085.280131 454 Sequencing (SRP001806) 389 465 + Val CAC [SRA]
Identical group No.453196 (1 seq.)
>SRA1025436 SRR035085.3868 454 Sequencing (SRP001806) 191 118 - Val CAC [SRA]
Identical group No.453213 (1 seq.)
>SRA1025487 SRR035085.23210 454 Sequencing (SRP001806) 199 274 + Val CAC [SRA]
Identical group No.453263 (1 seq.)
>SRA1025695 SRR035085.67855 454 Sequencing (SRP001806) 170 96 - Val CAC [SRA]
Identical group No.453424 (1 seq.)
>SRA1026639 SRR035085.246541 454 Sequencing (SRP001806) 258 333 + Val CAC [SRA]
Identical group No.654236 (6 seq.)
>WENV170612724 FUWD012670632 [FUWD] metagenome; unknown 314 240 - Val CAC [ENA]
>SRA1025482 SRR035085.22146 454 Sequencing (SRP001806) 252 178 - Val CAC [SRA]
>SRA1025505 SRR035085.27239 454 Sequencing (SRP001806) 252 178 - Val CAC [SRA]
>SRA1025598 SRR035085.45204 454 Sequencing (SRP001806) 253 179 - Val CAC [SRA]
>SRA1047818 SRR035094.46785 454 Sequencing (SRP001815) 460 386 - Val CAC [SRA]
>SRA1047950 SRR035094.74214 454 Sequencing (SRP001815) 324 250 - Val CAC [SRA]
Identical group No.654249 (3 seq.)
>WENV170611827 FUWD012411137 [FUWD] metagenome; unknown 6 80 + Val CAC [ENA]
>SRA1025581 SRR035085.41040 454 Sequencing (SRP001806) 246 320 + Val CAC [SRA]
>SRA1029984 SRR035087.211600 454 Sequencing (SRP001808) 163 89 - Val CAC [SRA]
Identical group No.654281 (6 seq.)
>WENV170611852 FUWD012419471 [FUWD] metagenome; unknown 82 8 - Val CAC [ENA]
>SRA1025823 SRR035085.89239 454 Sequencing (SRP001806) 201 127 - Val CAC [SRA]
>SRA1025938 SRR035085.113470 454 Sequencing (SRP001806) 201 127 - Val CAC [SRA]
>SRA1034665 SRR035089.147379 454 Sequencing (SRP001810) 424 350 - Val CAC [SRA]
>SRA1036349 SRR035089.500246 454 Sequencing (SRP001810) 157 231 + Val CAC [SRA]
>SRA1048136 SRR035094.114799 454 Sequencing (SRP001815) 285 211 - Val CAC [SRA]
Identical group No.654357 (30 seq.)
>W1710821930 LKUC01000050 Betaproteobacteria Smithella sp. SDB (LKUC) 4773 4847 + Val CAC [ENA]
>W141137378 AWGX01000938 Deltaproteobacteria Smithella sp. ME-1 [AWGX] 5970 6044 + Val CAC [ENA]
>W141170189 AXXK01000323 Deltaproteobacteria delta proteobacterium PSCGC 5451 [AXXK] 8058 8132 + Val CAC [ENA]
>W141170258 AXXP01000073 Deltaproteobacteria delta proteobacterium JGI 0000059-K16 [AXXP] 1891 1817 - Val CAC [ENA]
>WENV183513773 OMKS01007768 [OMKS] sediment metagenome; hot spring sediment 4141 4215 + Val CAC [ENA]
>WENV183516612 OMKS01216868 [OMKS] sediment metagenome; hot spring sediment 506 432 - Val CAC [ENA]
>ENV08002448 ABPU01006830 microbial mat metagenome; Guerrero Negro Hypersaline Mat 06; altitude 310m AMSL; sample depth 1m below water level, 5-6mm depth into the mat 408 334 - Val CAC [ENA]
>WENV170607858 FUWD010861916 [FUWD] metagenome; unknown 197 123 - Val CAC [ENA]
>WENV170624135 FUWD013175560 [FUWD] metagenome; unknown 1338 1264 - Val CAC [ENA]
>WENV170632417 FUWD013381702 [FUWD] metagenome; unknown 1338 1264 - Val CAC [ENA]
>WENV170715247 LNQE01001013 [LNQE] hydrocarbon metagenome; hydrocarbon-contaminated ditch 8671 8745 + Val CAC [ENA]
>WENV170973781 MTKY01050969 [MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant 1767 1693 - Val CAC [ENA]
>W141812377 JQDQ01000049 Deltaproteobacteria Smithella sp. SCADC [JQDQ] 5348 5422 + Val CAC [ENA]
>W141812378 JQDQ01000050 Deltaproteobacteria Smithella sp. SCADC [JQDQ] 5365 5439 + Val CAC [ENA]
>SRA1026386 SRR035085.198496 454 Sequencing (SRP001806) 207 133 - Val CAC [SRA]
>SRA1029185 SRR035087.88686 454 Sequencing (SRP001808) 334 260 - Val CAC [SRA]
>SRA1030032 SRR035087.218720 454 Sequencing (SRP001808) 114 188 + Val CAC [SRA]
>SRA1030296 SRR035087.257752 454 Sequencing (SRP001808) 455 381 - Val CAC [SRA]
>SRA1030336 SRR035087.264996 454 Sequencing (SRP001808) 186 112 - Val CAC [SRA]
>SRA1030694 SRR035087.315569 454 Sequencing (SRP001808) 186 112 - Val CAC [SRA]
>SRA1030950 SRR035087.353638 454 Sequencing (SRP001808) 488 414 - Val CAC [SRA]
>SRA1031376 SRR035087.421123 454 Sequencing (SRP001808) 317 243 - Val CAC [SRA]
>SRA1031620 SRR035087.461459 454 Sequencing (SRP001808) 38 112 + Val CAC [SRA]
>SRA1034572 SRR035089.126263 454 Sequencing (SRP001810) 21 95 + Val CAC [SRA]
>SRA1035745 SRR035089.366907 454 Sequencing (SRP001810) 103 29 - Val CAC [SRA]
>SRA1036449 SRR035089.525434 454 Sequencing (SRP001810) 2 76 + Val CAC [SRA]
>SRA1048300 SRR035094.141627 454 Sequencing (SRP001815) 499 425 - Val CAC [SRA]
>SRA1048429 SRR035094.171662 454 Sequencing (SRP001815) 116 42 - Val CAC [SRA]
>W1511185618 JMED01000429 Deltaproteobacteria Smithella sp. SC_K08D17 [JMED] 3428 3354 - Val CAC [ENA]
>W1610685892 LKUC01000050 Betaproteobacteria Smithella sp. SDB (LKUC) 4773 4847 + Val CAC [ENA]
Identical group No.654381 (1 seq.)
>SRA1026541 SRR035085.224684 454 Sequencing (SRP001806) 208 279 + Val CAC [SRA]
Select
Sequence ID Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Download Sequence Representative sequence of each cluster
View ClustalW result

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