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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001806)
Anticodon = CAC
HIT:
10 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.272271 (2 seq.)
>SRA1018242
SRR035082.260455
454 Sequencing (SRP001803)
196
270
+
Val
CAC
[SRA]
>SRA1025597
SRR035085.45080
454 Sequencing (SRP001806)
177
251
+
Val
CAC
[SRA]
Identical group No.272279 (15 seq.)
>W131157573
AQSK01000215
Unclassified
Cloacimonetes bacterium SCGC AAA252-E13 KSB1 bacterium SCGC AAA252-E13 [AQSK]
48090
48014
-
Val
CAC
[ENA]
¡û
>W131157603
AQSM01000035
Unclassified
Cloacimonetes bacterium SCGC AAA252-N14 KSB1 bacterium SCGC AAA252-N14 [AQSM]
1139
1063
-
Val
CAC
[ENA]
¡û
>W131192161
ASKQ01000005
Unclassified
Cloacimonetes bacterium SCGC AAA252-O17 KSB1 bacterium SCGC AAA252-O17 [ASKQ]
30148
30072
-
Val
CAC
[ENA]
¡û
>W131192938
ASNH01000020
Unclassified
Cloacimonetes bacterium SCGC AAA255-C20 KSB1 bacterium SCGC AAA255-C20 [ASNH]
15183
15259
+
Val
CAC
[ENA]
¡û
>W131192970
ASNI01000010
Unclassified
Cloacimonetes bacterium SCGC AAA252-N17 KSB1 bacterium SCGC AAA252-N17 [ASNI]
37508
37584
+
Val
CAC
[ENA]
¡û
>W131193001
ASNJ01000005
Unclassified
Cloacimonetes bacterium SCGC AAA252-N11 KSB1 bacterium SCGC AAA252-N11 [ASNJ]
19186
19262
+
Val
CAC
[ENA]
¡û
>W131193036
ASNK01000066
Unclassified
Cloacimonetes bacterium SCGC AAA252-E20 KSB1 bacterium SCGC AAA252-E20 [ASNK]
7134
7210
+
Val
CAC
[ENA]
¡û
>W131193078
ASNN01000009
Unclassified
Cloacimonetes bacterium SCGC AAA252-I11 KSB1 bacterium SCGC AAA252-I11 [ASNN]
48001
47925
-
Val
CAC
[ENA]
¡û
>W131193136
ASNQ01000013
Unclassified
Cloacimonetes bacterium SCGC AAA252-K16 KSB1 bacterium SCGC AAA252-K16 [ASNQ]
20974
21050
+
Val
CAC
[ENA]
¡û
>W141139670
AWNX01000001
Unclassified
Cloacimonetes bacterium JGI OTU-1 [AWNX]
112130
112206
+
Val
CAC
[ENA]
¡û
>WENV170624789
FUWD013186862
[FUWD] metagenome; unknown
2112
2036
-
Val
CAC
[ENA]
¢þ
>WENV170633063
FUWD013390849
[FUWD] metagenome; unknown
2112
2036
-
Val
CAC
[ENA]
¢þ
>SRA1025634
SRR035085.53809
454 Sequencing (SRP001806)
241
317
+
Val
CAC
[SRA]
>SRA1025981
SRR035085.120607
454 Sequencing (SRP001806)
241
317
+
Val
CAC
[SRA]
>SRA1035602
SRR035089.338607
454 Sequencing (SRP001810)
260
336
+
Val
CAC
[SRA]
Identical group No.272329 (5 seq.)
>WENV170602327
FUWD010226440
[FUWD] metagenome; unknown
724
648
-
Val
CAC
[ENA]
¢þ
>WENV170618985
FUWD012994926
[FUWD] metagenome; unknown
402
326
-
Val
CAC
[ENA]
¢þ
>SRA1017930
SRR035082.215318
454 Sequencing (SRP001803)
483
407
-
Val
CAC
[SRA]
>SRA1025910
SRR035085.107075
454 Sequencing (SRP001806)
410
334
-
Val
CAC
[SRA]
>SRA1026696
SRR035085.262226
454 Sequencing (SRP001806)
188
112
-
Val
CAC
[SRA]
Identical group No.272404 (2 seq.)
>WENV170694378
LGVD01042535
[LGVD] marine sediment metagenome; sample #3730, Push core (PC) 16 from cruise R/V Atlantis leg AT-15-68, Alvin dive 4635 at
1747
1821
+
Val
CAC
[ENA]
¢þ
>SRA1026412
SRR035085.203224
454 Sequencing (SRP001806)
254
180
-
Val
CAC
[SRA]
Identical group No.272415 (8 seq.)
>WENV170625894
FUWD013208601
[FUWD] metagenome; unknown
1390
1464
+
Val
CAC
[ENA]
¢þ
>WENV170628987
FUWD013258108
[FUWD] metagenome; unknown
14190
14116
-
Val
CAC
[ENA]
¢þ
>SRA1026474
SRR035085.213315
454 Sequencing (SRP001806)
383
309
-
Val
CAC
[SRA]
>SRA1040572
SRR035091.117064
454 Sequencing (SRP001812)
174
248
+
Val
CAC
[SRA]
>SRA1042011
SRR035091.327813
454 Sequencing (SRP001812)
186
112
-
Val
CAC
[SRA]
>SRA1043003
SRR035092.19228
454 Sequencing (SRP001813)
282
356
+
Val
CAC
[SRA]
>SRA1044554
SRR035092.300545
454 Sequencing (SRP001813)
202
126
-
Val
CAC
[SRA]
>SRA1047658
SRR035094.13503
454 Sequencing (SRP001815)
501
427
-
Val
CAC
[SRA]
Identical group No.272456 (8 seq.)
>WENV170611528
FUWD012341016
[FUWD] metagenome; unknown
499
423
-
Val
CAC
[ENA]
¢þ
>WENV170623299
FUWD013145083
[FUWD] metagenome; unknown
1046
1120
+
Val
CAC
[ENA]
¢þ
>WENV170631560
FUWD013357062
[FUWD] metagenome; unknown
364
290
-
Val
CAC
[ENA]
¢þ
>SRA1026668
SRR035085.254263
454 Sequencing (SRP001806)
305
229
-
Val
CAC
[SRA]
>SRA1035814
SRR035089.380834
454 Sequencing (SRP001810)
364
290
-
Val
CAC
[SRA]
>SRA1040580
SRR035091.118543
454 Sequencing (SRP001812)
283
359
+
Val
CAC
[SRA]
>SRA1041815
SRR035091.298278
454 Sequencing (SRP001812)
17
91
+
Val
CAC
[SRA]
>SRA1049211
SRR035095.38768
454 Sequencing (SRP001816)
23
97
+
Val
CAC
[SRA]
Identical group No.654236 (6 seq.)
>WENV170612724
FUWD012670632
[FUWD] metagenome; unknown
314
240
-
Val
CAC
[ENA]
¢þ
>SRA1025482
SRR035085.22146
454 Sequencing (SRP001806)
252
178
-
Val
CAC
[SRA]
>SRA1025505
SRR035085.27239
454 Sequencing (SRP001806)
252
178
-
Val
CAC
[SRA]
>SRA1025598
SRR035085.45204
454 Sequencing (SRP001806)
253
179
-
Val
CAC
[SRA]
>SRA1047818
SRR035094.46785
454 Sequencing (SRP001815)
460
386
-
Val
CAC
[SRA]
>SRA1047950
SRR035094.74214
454 Sequencing (SRP001815)
324
250
-
Val
CAC
[SRA]
Identical group No.654249 (3 seq.)
>WENV170611827
FUWD012411137
[FUWD] metagenome; unknown
6
80
+
Val
CAC
[ENA]
¢þ
>SRA1025581
SRR035085.41040
454 Sequencing (SRP001806)
246
320
+
Val
CAC
[SRA]
>SRA1029984
SRR035087.211600
454 Sequencing (SRP001808)
163
89
-
Val
CAC
[SRA]
Identical group No.654281 (6 seq.)
>WENV170611852
FUWD012419471
[FUWD] metagenome; unknown
82
8
-
Val
CAC
[ENA]
¢þ
>SRA1025823
SRR035085.89239
454 Sequencing (SRP001806)
201
127
-
Val
CAC
[SRA]
>SRA1025938
SRR035085.113470
454 Sequencing (SRP001806)
201
127
-
Val
CAC
[SRA]
>SRA1034665
SRR035089.147379
454 Sequencing (SRP001810)
424
350
-
Val
CAC
[SRA]
>SRA1036349
SRR035089.500246
454 Sequencing (SRP001810)
157
231
+
Val
CAC
[SRA]
>SRA1048136
SRR035094.114799
454 Sequencing (SRP001815)
285
211
-
Val
CAC
[SRA]
Identical group No.654357 (30 seq.)
>W1710821930
LKUC01000050
Thermodesulfobacteriota
Smithella sp. SDB [LKUC]
4773
4847
+
Val
CAC
[ENA]
¡û
>W141137378
AWGX01000938
Thermodesulfobacteriota
Smithella sp. ME-1 [AWGX]
5970
6044
+
Val
CAC
[ENA]
¡û
>W141170189
AXXK01000323
Unclassified
delta proteobacterium PSCGC 5451 [AXXK]
8058
8132
+
Val
CAC
[ENA]
¡û
>W141170258
AXXP01000073
Unclassified
delta proteobacterium JGI 0000059-K16 [AXXP]
1891
1817
-
Val
CAC
[ENA]
¡û
>WENV183513773
OMKS01007768
[OMKS] sediment metagenome; hot spring sediment
4141
4215
+
Val
CAC
[ENA]
¢þ
>WENV183516612
OMKS01216868
[OMKS] sediment metagenome; hot spring sediment
506
432
-
Val
CAC
[ENA]
¢þ
>ENV08002448
ABPU01006830
microbial mat metagenome; Guerrero Negro Hypersaline Mat 06; altitude 310m AMSL; sample depth 1m below water level, 5-6mm depth into the mat
408
334
-
Val
CAC
[ENA]
¡û
>WENV170607858
FUWD010861916
[FUWD] metagenome; unknown
197
123
-
Val
CAC
[ENA]
¢þ
>WENV170624135
FUWD013175560
[FUWD] metagenome; unknown
1338
1264
-
Val
CAC
[ENA]
¢þ
>WENV170632417
FUWD013381702
[FUWD] metagenome; unknown
1338
1264
-
Val
CAC
[ENA]
¢þ
>WENV170715247
LNQE01001013
[LNQE] hydrocarbon metagenome; hydrocarbon-contaminated ditch
8671
8745
+
Val
CAC
[ENA]
¢þ
>WENV170973781
MTKY01050969
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1767
1693
-
Val
CAC
[ENA]
¢þ
>W141812377
JQDQ01000049
Thermodesulfobacteriota
Smithella sp. SCADC [JQDQ]
5348
5422
+
Val
CAC
[ENA]
¡û
>W141812378
JQDQ01000050
Thermodesulfobacteriota
Smithella sp. SCADC [JQDQ]
5365
5439
+
Val
CAC
[ENA]
¡û
>SRA1026386
SRR035085.198496
454 Sequencing (SRP001806)
207
133
-
Val
CAC
[SRA]
>SRA1029185
SRR035087.88686
454 Sequencing (SRP001808)
334
260
-
Val
CAC
[SRA]
>SRA1030032
SRR035087.218720
454 Sequencing (SRP001808)
114
188
+
Val
CAC
[SRA]
>SRA1030296
SRR035087.257752
454 Sequencing (SRP001808)
455
381
-
Val
CAC
[SRA]
>SRA1030336
SRR035087.264996
454 Sequencing (SRP001808)
186
112
-
Val
CAC
[SRA]
>SRA1030694
SRR035087.315569
454 Sequencing (SRP001808)
186
112
-
Val
CAC
[SRA]
>SRA1030950
SRR035087.353638
454 Sequencing (SRP001808)
488
414
-
Val
CAC
[SRA]
>SRA1031376
SRR035087.421123
454 Sequencing (SRP001808)
317
243
-
Val
CAC
[SRA]
>SRA1031620
SRR035087.461459
454 Sequencing (SRP001808)
38
112
+
Val
CAC
[SRA]
>SRA1034572
SRR035089.126263
454 Sequencing (SRP001810)
21
95
+
Val
CAC
[SRA]
>SRA1035745
SRR035089.366907
454 Sequencing (SRP001810)
103
29
-
Val
CAC
[SRA]
>SRA1036449
SRR035089.525434
454 Sequencing (SRP001810)
2
76
+
Val
CAC
[SRA]
>SRA1048300
SRR035094.141627
454 Sequencing (SRP001815)
499
425
-
Val
CAC
[SRA]
>SRA1048429
SRR035094.171662
454 Sequencing (SRP001815)
116
42
-
Val
CAC
[SRA]
>W1511185618
JMED01000429
Thermodesulfobacteriota
Smithella sp. SC_K08D17 [JMED]
3428
3354
-
Val
CAC
[ENA]
¡û
>W1610685892
LKUC01000050
Thermodesulfobacteriota
Smithella sp. SDB [LKUC]
4773
4847
+
Val
CAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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