This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001806)
Anticodon = CGT
HIT:
14 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.272399 (5 seq.)
>WENV170620383
FUWD013030739
[FUWD] metagenome; unknown
2698
2774
+
Thr
CGT
[ENA]
¢þ
>WENV170628521
FUWD013248295
[FUWD] metagenome; unknown
2698
2774
+
Thr
CGT
[ENA]
¢þ
>SRA1026391
SRR035085.200248
454 Sequencing (SRP001806)
363
439
+
Thr
CGT
[SRA]
>SRA1035505
SRR035089.319739
454 Sequencing (SRP001810)
269
345
+
Thr
CGT
[SRA]
>SRA1043460
SRR035092.119451
454 Sequencing (SRP001813)
185
109
-
Thr
CGT
[SRA]
Identical group No.453195 (2 seq.)
>W1711391321
MELJ01000241
Actinomycetota
Actinobacteria bacterium RBG_13_35_12 [MELJ]
4299
4224
-
Thr
CGT
[ENA]
¡û
>SRA1025435
SRR035085.2939
454 Sequencing (SRP001806)
52
127
+
Thr
CGT
[SRA]
Identical group No.453199 (30 seq.)
>W131216791
ATWD01000001
Acidobacteriota
Acidobacteriaceae bacterium TAA 166 TAA166 [ATWD]
3106469
3106544
+
Thr
CGT
[ENA]
¡û
>WENV170615854
FUWD012870435
[FUWD] metagenome; unknown
1030
955
-
Thr
CGT
[ENA]
¢þ
>WENV170619764
FUWD013020663
[FUWD] metagenome; unknown
10639
10714
+
Thr
CGT
[ENA]
¢þ
>WENV170627885
FUWD013238952
[FUWD] metagenome; unknown
10639
10714
+
Thr
CGT
[ENA]
¢þ
>W141557286
JHVA01000001
Acidobacteriota
Acidobacteriaceae bacterium KBS 146 KBS 146 [JHVA]
3698733
3698808
+
Thr
CGT
[ENA]
¡û
>SRA1018082
SRR035082.237206
454 Sequencing (SRP001803)
300
375
+
Thr
CGT
[SRA]
>SRA1025445
SRR035085.8024
454 Sequencing (SRP001806)
220
295
+
Thr
CGT
[SRA]
>SRA1025494
SRR035085.24925
454 Sequencing (SRP001806)
36
111
+
Thr
CGT
[SRA]
>SRA1025873
SRR035085.99388
454 Sequencing (SRP001806)
39
114
+
Thr
CGT
[SRA]
>SRA1025904
SRR035085.105833
454 Sequencing (SRP001806)
39
114
+
Thr
CGT
[SRA]
>SRA1025925
SRR035085.111110
454 Sequencing (SRP001806)
39
114
+
Thr
CGT
[SRA]
>SRA1026704
SRR035085.265477
454 Sequencing (SRP001806)
41
116
+
Thr
CGT
[SRA]
>SRA1026812
SRR035085.297665
454 Sequencing (SRP001806)
172
97
-
Thr
CGT
[SRA]
>SRA1030236
SRR035087.247350
454 Sequencing (SRP001808)
234
159
-
Thr
CGT
[SRA]
>SRA1030306
SRR035087.259780
454 Sequencing (SRP001808)
56
131
+
Thr
CGT
[SRA]
>SRA1030668
SRR035087.311778
454 Sequencing (SRP001808)
25
100
+
Thr
CGT
[SRA]
>SRA1030742
SRR035087.324151
454 Sequencing (SRP001808)
234
159
-
Thr
CGT
[SRA]
>SRA1031082
SRR035087.370112
454 Sequencing (SRP001808)
50
125
+
Thr
CGT
[SRA]
>SRA1031596
SRR035087.456542
454 Sequencing (SRP001808)
25
100
+
Thr
CGT
[SRA]
>SRA1033703
SRR035088.329437
454 Sequencing (SRP001809)
228
303
+
Thr
CGT
[SRA]
>SRA1034938
SRR035089.202767
454 Sequencing (SRP001810)
125
200
+
Thr
CGT
[SRA]
>SRA1035533
SRR035089.325960
454 Sequencing (SRP001810)
127
202
+
Thr
CGT
[SRA]
>SRA1035850
SRR035089.388537
454 Sequencing (SRP001810)
128
203
+
Thr
CGT
[SRA]
>SRA1036387
SRR035089.508669
454 Sequencing (SRP001810)
150
75
-
Thr
CGT
[SRA]
>SRA1047782
SRR035094.41030
454 Sequencing (SRP001815)
501
426
-
Thr
CGT
[SRA]
>SRA1048079
SRR035094.104499
454 Sequencing (SRP001815)
233
158
-
Thr
CGT
[SRA]
>SRA1048290
SRR035094.140539
454 Sequencing (SRP001815)
189
264
+
Thr
CGT
[SRA]
>SRA1048488
SRR035094.185236
454 Sequencing (SRP001815)
53
128
+
Thr
CGT
[SRA]
>SRA1049649
SRR035095.110989
454 Sequencing (SRP001816)
183
108
-
Thr
CGT
[SRA]
>SRA1050214
SRR035095.213942
454 Sequencing (SRP001816)
152
227
+
Thr
CGT
[SRA]
Identical group No.453243 (4 seq.)
>WENV170605049
FUWD010443864
[FUWD] metagenome; unknown
450
377
-
Thr
CGT
[ENA]
¢þ
>SRA1025617
SRR035085.50810
454 Sequencing (SRP001806)
130
55
-
Thr
CGT
[SRA]
>SRA1029898
SRR035087.198580
454 Sequencing (SRP001808)
285
358
+
Thr
CGT
[SRA]
>SRA1032419
SRR035087.627525
454 Sequencing (SRP001808)
200
127
-
Thr
CGT
[SRA]
Identical group No.453314 (9 seq.)
>WENV170612347
FUWD012584029
[FUWD] metagenome; unknown
347
275
-
Thr
CGT
[ENA]
¢þ
>SRA1025932
SRR035085.112892
454 Sequencing (SRP001806)
226
298
+
Thr
CGT
[SRA]
>SRA1029606
SRR035087.150591
454 Sequencing (SRP001808)
116
188
+
Thr
CGT
[SRA]
>SRA1034714
SRR035089.158466
454 Sequencing (SRP001810)
5
80
+
Thr
CGT
[SRA]
>SRA1035363
SRR035089.290617
454 Sequencing (SRP001810)
151
223
+
Thr
CGT
[SRA]
>SRA1047894
SRR035094.63015
454 Sequencing (SRP001815)
402
330
-
Thr
CGT
[SRA]
>SRA1047919
SRR035094.68077
454 Sequencing (SRP001815)
403
331
-
Thr
CGT
[SRA]
>SRA1048127
SRR035094.113477
454 Sequencing (SRP001815)
403
331
-
Thr
CGT
[SRA]
>SRA1048930
SRR035094.288863
454 Sequencing (SRP001815)
403
331
-
Thr
CGT
[SRA]
Identical group No.453342 (4 seq.)
>WENV170623234
FUWD013142537
[FUWD] metagenome; unknown
1212
1287
+
Thr
CGT
[ENA]
¢þ
>WENV170631490
FUWD013354747
[FUWD] metagenome; unknown
1212
1287
+
Thr
CGT
[ENA]
¢þ
>SRA1026110
SRR035085.146137
454 Sequencing (SRP001806)
179
104
-
Thr
CGT
[SRA]
>SRA1029432
SRR035087.126563
454 Sequencing (SRP001808)
368
443
+
Thr
CGT
[SRA]
Identical group No.453349 (4 seq.)
>WENV170613321
FUWD012795076
[FUWD] metagenome; unknown
414
339
-
Thr
CGT
[ENA]
¢þ
>SRA1018783
SRR035082.346208
454 Sequencing (SRP001803)
388
463
+
Thr
CGT
[SRA]
>SRA1026149
SRR035085.153342
454 Sequencing (SRP001806)
408
483
+
Thr
CGT
[SRA]
>SRA1031012
SRR035087.360273
454 Sequencing (SRP001808)
157
82
-
Thr
CGT
[SRA]
Identical group No.453369 (2 seq.)
>WENV170613420
FUWD012802842
[FUWD] metagenome; unknown
597
522
-
Thr
CGT
[ENA]
¢þ
>SRA1026279
SRR035085.178704
454 Sequencing (SRP001806)
213
288
+
Thr
CGT
[SRA]
Identical group No.453399 (3 seq.)
>WENV170611889
FUWD012430299
[FUWD] metagenome; unknown
127
199
+
Thr
CGT
[ENA]
¢þ
>SRA1026482
SRR035085.213861
454 Sequencing (SRP001806)
179
251
+
Thr
CGT
[SRA]
>SRA1048756
SRR035094.241852
454 Sequencing (SRP001815)
310
238
-
Thr
CGT
[SRA]
Identical group No.453408 (3 seq.)
>WENV170611895
FUWD012431438
[FUWD] metagenome; unknown
272
197
-
Thr
CGT
[ENA]
¢þ
>WENV170699102
LGVF01481540
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
588
513
-
Thr
CGT
[ENA]
¢þ
>SRA1026546
SRR035085.225625
454 Sequencing (SRP001806)
280
205
-
Thr
CGT
[SRA]
Identical group No.453420 (3 seq.)
>WENV170613296
FUWD012794101
[FUWD] metagenome; unknown
457
532
+
Thr
CGT
[ENA]
¢þ
>SRA1026626
SRR035085.244271
454 Sequencing (SRP001806)
184
259
+
Thr
CGT
[SRA]
>SRA1026732
SRR035085.275281
454 Sequencing (SRP001806)
185
260
+
Thr
CGT
[SRA]
Identical group No.654262 (5 seq.)
>WENV170620286
FUWD013028803
[FUWD] metagenome; unknown
706
632
-
Thr
CGT
[ENA]
¢þ
>WENV170628419
FUWD013246485
[FUWD] metagenome; unknown
706
632
-
Thr
CGT
[ENA]
¢þ
>SRA1017895
SRR035082.211222
454 Sequencing (SRP001803)
363
289
-
Thr
CGT
[SRA]
>SRA1018681
SRR035082.331899
454 Sequencing (SRP001803)
399
327
-
Thr
CGT
[SRA]
>SRA1025684
SRR035085.65802
454 Sequencing (SRP001806)
387
313
-
Thr
CGT
[SRA]
Identical group No.654404 (7 seq.)
>WENV170216926
CEPX01303413
[CEPX] marine metagenome genome assembly TARA_037_MES_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
317
245
-
Thr
CGT
[ENA]
¢þ
>WENV170607868
FUWD010863124
[FUWD] metagenome; unknown
198
126
-
Thr
CGT
[ENA]
¢þ
>SRA1019788
SRR035082.531150
454 Sequencing (SRP001803)
218
144
-
Thr
CGT
[SRA]
>SRA1026747
SRR035085.278777
454 Sequencing (SRP001806)
184
258
+
Thr
CGT
[SRA]
>SRA1026780
SRR035085.288338
454 Sequencing (SRP001806)
130
58
-
Thr
CGT
[SRA]
>SRA1047698
SRR035094.24076
454 Sequencing (SRP001815)
352
424
+
Thr
CGT
[SRA]
>SRA1047795
SRR035094.42415
454 Sequencing (SRP001815)
269
341
+
Thr
CGT
[SRA]
Identical group No.654405 (3 seq.)
>WENV170611909
FUWD012435966
[FUWD] metagenome; unknown
112
40
-
Thr
CGT
[ENA]
¢þ
>SRA1026752
SRR035085.280182
454 Sequencing (SRP001806)
229
157
-
Thr
CGT
[SRA]
>SRA1048397
SRR035094.164241
454 Sequencing (SRP001815)
122
50
-
Thr
CGT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK