tRNA genes clustered and arranged according to each identical group

Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)

Anticodon = GGC

HIT: 6 Group(s).
Download Sequence Representative sequence of each cluster
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Sort by Identical group No. Sort by the number of tRNAs in the Identical group
Select
 Sequence ID Genome ID
(or Accession No.)		 Phylum/Class
(Sample source for ENV)		 Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Identical group No.158361 (8 seq.)
>WENV170647643 JREQ01000950 [JREQ] marine sediment metagenome; clay from marine sediments 31 meters below sea floor depth collected from drilling site U1352C 1568 1491 - Ala GGC [ENA] ¢þ
>WENV170647764 JREQ01004177 [JREQ] marine sediment metagenome; clay from marine sediments 31 meters below sea floor depth collected from drilling site U1352C 1294 1369 + Ala GGC [ENA] ¢þ
>SRA1002342 SRR001322.29444 Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183) 78 1 - Ala GGC [SRA]
>SRA1002368 SRR001322.92104 Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183) 105 28 - Ala GGC [SRA]
>SRA1002538 SRR001326.2882 Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183) 31 107 + Ala GGC [SRA]
>SRA1002544 SRR001326.39893 Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183) 24 100 + Ala GGC [SRA]
>SRA1002553 SRR001326.73461 Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183) 9 85 + Ala GGC [SRA]
>SRA1013615 SRR023396.301446 Brazos-Trinity Basin Sediment Metagenome: IODP Site 1320 (SRP001095) 118 193 + Ala GGC [SRA]
Identical group No.163215 (1 seq.)
>SRA1002541 SRR001326.24664 Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183) 91 14 - Ala GGC [SRA]
Identical group No.282257 (34 seq.)
>W131162447 AQYX01000032 Atribacterota Atribacteria bacterium SCGC AAA252-M02 OP9 bacterium SCGC AAA252-M02 [AQYX] 1173 1248 + Ala GGC [ENA] ¡û
>W131193739 ASOY01000025 Atribacterota Atribacteria bacterium JGI 0000079-L04 OP9 bacterium JGI 0000079-L04 [ASOY] 14715 14640 - Ala GGC [ENA] ¡û
>W131193763 ASPA01000029 Atribacterota Atribacteria bacterium SCGC AAA255-G05 OP9 bacterium SCGC AAA255-G05 [ASPA] 3945 4020 + Ala GGC [ENA] ¡û
>W131193791 ASPB01000061 Atribacterota Atribacteria bacterium SCGC AB-164-D21 OP9 bacterium SCGC AB-164-D21 [ASPB] 786 711 - Ala GGC [ENA] ¡û
>W1711391308 MELJ01000158 Actinomycetota Actinobacteria bacterium RBG_13_35_12 [MELJ] 1844 1919 + Ala GGC [ENA] ¡û
>W1711398150 MEYG01000067 Atribacterota Candidatus Atribacteria bacterium RBG_16_35_8 [MEYG] 3807 3732 - Ala GGC [ENA] ¡û
>W1711584810 MNYY01000016 Atribacterota Candidatus Atribacteria bacterium CG2_30_33_13 [MNYY] 7022 7097 + Ala GGC [ENA] ¡û
>WENV181412754 OGCK01006644 [OGCK] hot springs metagenome; hot spring sediment 1157 1082 - Ala GGC [ENA] ¢þ
>WENV183514225 OMKS01013950 [OMKS] sediment metagenome; hot spring sediment 4400 4325 - Ala GGC [ENA] ¢þ
>WENV170016650 BARS01000057 [BARS] marine sediment metagenome; marine subsurface sediment at 0.8 meters below seafloor (mbsf), off the Shimokita Peninsula 1573 1648 + Ala GGC [ENA] ¢þ
>WENV170016660 BARS01000428 [BARS] marine sediment metagenome; marine subsurface sediment at 0.8 meters below seafloor (mbsf), off the Shimokita Peninsula 236 311 + Ala GGC [ENA] ¢þ
>WENV170017006 BARS01039742 [BARS] marine sediment metagenome; marine subsurface sediment at 0.8 meters below seafloor (mbsf), off the Shimokita Peninsula 264 339 + Ala GGC [ENA] ¢þ
>WENV170017202 BART01001051 [BART] marine sediment metagenome; marine subsurface sediment at 5.1 meters below seafloor (mbsf), off the Shimokita Peninsula 1787 1862 + Ala GGC [ENA] ¢þ
>WENV170017253 BART01004757 [BART] marine sediment metagenome; marine subsurface sediment at 5.1 meters below seafloor (mbsf), off the Shimokita Peninsula 169 244 + Ala GGC [ENA] ¢þ
>WENV170017882 BARU01036801 [BARU] marine sediment metagenome; marine subsurface sediment at 18.6 meters below seafloor (mbsf), off the Shimokita Peninsula 543 468 - Ala GGC [ENA] ¢þ
>WENV170018057 BARV01007606 [BARV] marine sediment metagenome; marine subsurface sediment at 48.5 meters below seafloor (mbsf), off the Shimokita Peninsula 1001 926 - Ala GGC [ENA] ¢þ
>WENV170018336 BARW01002372 [BARW] marine sediment metagenome; marine subsurface sediment at 107.0 meters below seafloor (mbsf), off the Shimokita Peninsula 208 283 + Ala GGC [ENA] ¢þ
>WENV170018445 BARW01018342 [BARW] marine sediment metagenome; marine subsurface sediment at 107.0 meters below seafloor (mbsf), off the Shimokita Peninsula 131 206 + Ala GGC [ENA] ¢þ
>WENV170620543 FUWD013033533 [FUWD] metagenome; unknown 835 910 + Ala GGC [ENA] ¢þ
>WENV170628686 FUWD013250959 [FUWD] metagenome; unknown 835 910 + Ala GGC [ENA] ¢þ
>WENV170678053 LDZT01010705 [LDZT] terrestrial metagenome; oil reservoir sample SB1 20540 20465 - Ala GGC [ENA] ¢þ
>WENV170679161 LDZU01008750 [LDZU] terrestrial metagenome; oil reservoir sample SB2 20706 20631 - Ala GGC [ENA] ¢þ
>WENV170693716 LGVC01049714 [LGVC] marine sediment metagenome; sample #5133, Elevator 3A push core 47, collected at Hydrate Ridge North during Jason II dive 331 256 - Ala GGC [ENA] ¢þ
>WENV170694225 LGVD01022749 [LGVD] marine sediment metagenome; sample #3730, Push core (PC) 16 from cruise R/V Atlantis leg AT-15-68, Alvin dive 4635 at 4676 4751 + Ala GGC [ENA] ¢þ
>W1910702368 MEYH01000004 Atribacterota Candidatus Atribacteria bacterium RBG_19FT_COMBO_35_14 [MEYH] 10713 10788 + Ala GGC [ENA] ¡û
>W1910870320 NCRO01000111 Atribacterota Candidatus Atribacteria bacterium RS-JS1 [NCRO] 11881 11806 - Ala GGC [ENA] ¡û
>SRA1002456 SRR001324.23970 Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183) 94 19 - Ala GGC [SRA]
>SRA1002467 SRR001324.42611 Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183) 94 19 - Ala GGC [SRA]
>SRA1002491 SRR001324.104445 Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183) 94 19 - Ala GGC [SRA]
>SRA1017652 SRR035082.175639 454 Sequencing (SRP001803) 377 452 + Ala GGC [SRA]
>SRA1030431 SRR035087.278771 454 Sequencing (SRP001808) 183 258 + Ala GGC [SRA]
>SRA1034675 SRR035089.148704 454 Sequencing (SRP001810) 284 209 - Ala GGC [SRA]
>SRA1035123 SRR035089.241798 454 Sequencing (SRP001810) 320 245 - Ala GGC [SRA]
>W1510076775 CDPL01000047 Atribacterota Atribacteria bacterium JGI 0000014-F07 [CDPL] 1798 1873 + Ala GGC [ENA] ¡û
Identical group No.312621 (2 seq.)
>WENV183512222 OMKS01000148 [OMKS] sediment metagenome; hot spring sediment 30911 30837 - Ala GGC [ENA] ¢þ
>SRA1002472 SRR001324.53891 Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183) 81 8 - Ala GGC [SRA]
Identical group No.328626 (10 seq.)
>W1711408427 MGMP01000123 Chloroflexota Chloroflexi bacterium RBG_13_50_10 [MGMP] 6964 7038 + Ala GGC [ENA] ¡û
>WENV180342646 OBLJ01073421 [OBLJ] soil metagenome; Clay 434 361 - Ala GGC [ENA] ¢þ
>WENV183663177 ORJL010262145 [ORJL] groundwater metagenome; groundwater 174 249 + Ala GGC [ENA] ¢þ
>WENV183667103 ORJL010615255 [ORJL] groundwater metagenome; groundwater 46403 46328 - Ala GGC [ENA] ¢þ
>WENV170017281 BART01007700 [BART] marine sediment metagenome; marine subsurface sediment at 5.1 meters below seafloor (mbsf), off the Shimokita Peninsula 1197 1122 - Ala GGC [ENA] ¢þ
>WENV170017886 BARU01038183 [BARU] marine sediment metagenome; marine subsurface sediment at 18.6 meters below seafloor (mbsf), off the Shimokita Peninsula 11 86 + Ala GGC [ENA] ¢þ
>WENV170018346 BARW01003391 [BARW] marine sediment metagenome; marine subsurface sediment at 107.0 meters below seafloor (mbsf), off the Shimokita Peninsula 636 711 + Ala GGC [ENA] ¢þ
>WENV170018492 BARW01027559 [BARW] marine sediment metagenome; marine subsurface sediment at 107.0 meters below seafloor (mbsf), off the Shimokita Peninsula 617 542 - Ala GGC [ENA] ¢þ
>WENV170647927 JRER01001313 [JRER] marine sediment metagenome; clay from marine sediments 136 meters below sea floor depth collected from drilling site U1352C 3528 3603 + Ala GGC [ENA] ¢þ
>SRA1002552 SRR001326.72651 Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183) 126 52 - Ala GGC [SRA]
Identical group No.447959 (1 seq.)
>SRA1002477 SRR001324.63276 Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183) 92 18 - Ala GGC [SRA]
Select
 Sequence ID Genome ID
(or Accession No.)		 Phylum/Class
(Sample source for ENV)		 Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Download Sequence Representative sequence of each cluster
View ClustalW result

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