tRNA genes clustered and arranged according to each identical group

Solar Salterns, microbial fraction from medium salinity saltern in San Diego, CA (SRP000147)

HIT: 10 Group(s).
Download Sequence Representative sequence of each cluster
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Sequence ID Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Identical group No.87460 (76 seq.)
>W1710797089 LJST01000038 Gammaproteobacteria Halomonas sp. HL-93 (LJST) 4105 4192 + Ser GGA [ENA]
>W1711065222 LSBP01000018 Gammaproteobacteria Halomonadaceae bacterium T82-2 (LSBP) 60173 60260 + Ser GGA [ENA]
>W1711178240 LWGO01000003 Gammaproteobacteria Halomonas elongata (LWGO) 104703 104790 + Ser GGA [ENA]
>W1711302727 MAJD01000001 Gammaproteobacteria Halomonas elongata (MAJD) 1315907 1315820 - Ser GGA [ENA]
>W1711339805 MCAP01000013 Gammaproteobacteria Salinicola sp. MIT1003 (MCAP) 73669 73582 - Ser GGA [ENA]
>W1712082125 NHOU01000012 Gammaproteobacteria Salinicola salarius (NHOU) 99859 99946 + Ser GGA [ENA]
>C171092340 CP019326 Gammaproteobacteria Halomonas sp. 1513 (CP019326) 3037570 3037483 - Ser GGA -
>W141093346 AVBC01000039 Gammaproteobacteria Halomonas sp. BJGMM-B45 [AVBC] 1025925 1026012 + Ser GGA [ENA]
>WENV181234461 OFEU01000171 [OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium 3806 3893 + Ser GGA [ENA]
>W141152739 AXCA01000158 Gammaproteobacteria Halomonas sp. PBN3 [AXCA] 82894 82981 + Ser GGA [ENA]
>ENV08001172 ABMR01000745 saltern metagenome; microbial fraction from medium salinity saltern in San Diego, CA 116 29 - Ser GGA [ENA]
>ENV08001173 ABMR01000793 saltern metagenome; microbial fraction from medium salinity saltern in San Diego, CA 115 28 - Ser GGA [ENA]
>WENV170363818 CETM01190079 [CETM] marine metagenome genome assembly TARA_122_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 18425 18338 - Ser GGA [ENA]
>WENV170372874 CETS01143210 [CETS] marine metagenome genome assembly TARA_122_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 324 411 + Ser GGA [ENA]
>WENV170488406 CEVO01200363 [CEVO] marine metagenome genome assembly TARA_152_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 352 265 - Ser GGA [ENA]
>WENV170702075 LKMJ01000451 [LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake 27080 26993 - Ser GGA [ENA]
>C181052495 CP021435 Gammaproteobacteria Halomonas beimenensis NTU-111 (CP021435) 2551156 2551069 - Ser GGA -
>W1910183886 BJOC01000052 Gammaproteobacteria Halomonas halmophila NBRC 15537 (BJOC) 3997 4084 + Ser GGA [ENA]
>W1910339588 FTLE01000002 Gammaproteobacteria Halomonas sp. Marseille-P2426 (FTLE) 248930 249017 + Ser GGA [ENA]
>W1911245428 NSKB01000002 Gammaproteobacteria Halomonas sp. WRN001 (NSKB) 111522 111435 - Ser GGA [ENA]
>W1911747093 QWBW01000015 Gammaproteobacteria Halomonas sp. 362.1 (QWBW) 124892 124805 - Ser GGA [ENA]
>SRA1001245 SRR001058.7651 Solar Salterns, microbial fraction from medium salinity saltern in San Diego, CA (SRP000147) 116 29 - Ser GGA [SRA]
>SRA1001246 SRR001058.9704 Solar Salterns, microbial fraction from medium salinity saltern in San Diego, CA (SRP000147) 115 28 - Ser GGA [SRA]
>W1810062645 PDOG01000003 Gammaproteobacteria Halomonas sp. LBP4 (PDOG) 239371 239458 + Ser GGA [ENA]
>W1810062732 PDOH01000050 Gammaproteobacteria Halomonas heilongjiangensis 9-2 (PDOH) 5553 5640 + Ser GGA [ENA]
>W1810121068 PHUC01000002 Gammaproteobacteria Halomonas sp. es.049 ES.049 (PHUC) 800270 800357 + Ser GGA [ENA]
>W1810177430 PJRN01000003 Gammaproteobacteria Halomonas sp. LCB169 (PJRN) 121163 121076 - Ser GGA [ENA]
>W1810199944 PNRE01000035 Gammaproteobacteria Halomonas heilongjiangensis DSM 26881 (PNRE) 5479 5566 + Ser GGA [ENA]
>W1810200028 PNRF01000031 Gammaproteobacteria Halomonas sp. MC28 (PNRF) 22036 22123 + Ser GGA [ENA]
>W1810200072 PNRG01000029 Gammaproteobacteria Halomonas urumqiensis BZ-SZ-XJ27 (PNRG) 4311 4398 + Ser GGA [ENA]
>W1810385371 PXNS01000002 Gammaproteobacteria Halomonas sp. SYSU ZJ2214 (PXNS) 4490 4577 + Ser GGA [ENA]
>W1810385424 PXNT01000001 Gammaproteobacteria Halomonas sp. SYSU XM8 (PXNT) 136004 135917 - Ser GGA [ENA]
>W1810387690 PXWD01000021 Gammaproteobacteria Halomonas sp. ND22Bw (PXWD) 2503 2416 - Ser GGA [ENA]
>W1810423947 PYUD01000001 Gammaproteobacteria Halomonas urumqiensis BZ-SZ-XJ27T (PYUD) 1090029 1090116 + Ser GGA [ENA]
>W1810424669 PYUQ02000016 Gammaproteobacteria Halomonas sp. SL1 (PYUQ) 319050 318963 - Ser GGA [ENA]
>W1810426003 PYVV01000013 Gammaproteobacteria Halomonas sp. BN3-1 (PYVV) 16911 16824 - Ser GGA [ENA]
>W1810426094 PYVX01000001 Gammaproteobacteria Halomonas denitrificans DSM 18045 (PYVX) 670047 669960 - Ser GGA [ENA]
>W1810444047 PZJK01000005 Gammaproteobacteria Salinicola sp. RZ23 (PZJK) 163994 164081 + Ser GGA [ENA]
>W1810444138 PZJL01000011 Gammaproteobacteria Salinicola sp. CR57 (PZJL) 190097 190010 - Ser GGA [ENA]
>W1810444191 PZJM01000006 Gammaproteobacteria Salinicola sp. CR50 (PZJM) 194535 194622 + Ser GGA [ENA]
>W1810444288 PZJO01000002 Gammaproteobacteria Salinicola sp. CPA92 (PZJO) 737222 737135 - Ser GGA [ENA]
>W1810444387 PZJP01000017 Gammaproteobacteria Salinicola sp. CPA62 (PZJP) 213657 213570 - Ser GGA [ENA]
>W1810444620 PZJT01000011 Gammaproteobacteria Salinicola salarius DSM 18044 (PZJT) 149164 149251 + Ser GGA [ENA]
>W1810444724 PZJV01000001 Gammaproteobacteria Salinicola halophilus CECT 5903 (PZJV) 887710 887623 - Ser GGA [ENA]
>W1810444819 PZJW01000010 Gammaproteobacteria Salinicola acroporae LMG 28587 (PZJW) 212312 212399 + Ser GGA [ENA]
>W1810624121 QHGY01000001 Gammaproteobacteria Halomonas sp. KCTC 52281 (QHGY) 1011755 1011668 - Ser GGA [ENA]
>W1810695991 QLSX01000008 Gammaproteobacteria Halomonas taeanensis USBA-857 (QLSX) 2897 2810 - Ser GGA [ENA]
>W1810758236 QPII01000005 Gammaproteobacteria Halomonas sp. PYC7W (QPII) 221162 221249 + Ser GGA [ENA]
>C11110089 FN869568 Gammaproteobacteria Halomonas elongata DSM 2581 1171251 1171338 + Ser GGA [Ensembl]
>W1511053650 JIBT01000045 Gammaproteobacteria Halomonas sp. PR-M31 [JIBT] 8269 8356 + Ser GGA [ENA]
>W1511270579 JOKD01000017 Gammaproteobacteria Halomonas salina CIFRI 1 [JOKD] 76297 76210 - Ser GGA [ENA]
>W1511500061 JXAS01000025 Gammaproteobacteria Halomonas caseinilytica WD26 [JXAS] 45878 45791 - Ser GGA [ENA]
>W1511518469 JXYB01000065 Gammaproteobacteria Halomonas sp. S2151 [JXYB] 661 574 - Ser GGA [ENA]
>W1511565243 LAEZ01000041 Gammaproteobacteria Halomonas sp. HG01 [LAEZ] 1846265 1846352 + Ser GGA [ENA]
>W11171872 AFQW01000024 Gammaproteobacteria Halomonas sp. TD01 [AFQW] 49804 49891 + Ser GGA [ENA]
>C161051022 CP013106 Gammaproteobacteria Halomonas huangheensis BJGMM-B45 1367844 1367931 + Ser GGA -
>C161068855 CP014226 Gammaproteobacteria Halomonas chromatireducens AGD 8-3 2813658 2813571 - Ser GGA [Ensembl]
>C161109477 LT593974 Gammaproteobacteria Halomonas sp. HL-93 2610121 2610034 - Ser GGA -
>W1610082132 BDEO01000002 Gammaproteobacteria Halomonas sinaiensis (BDEO) 114784 114697 - Ser GGA [ENA]
>W1610082207 BDEP01000013 Gammaproteobacteria Halomonas caseinilytica (BDEP) 120652 120565 - Ser GGA [ENA]
>W121063533 AJKS02000013 Gammaproteobacteria Halomonas smyrnensis AAD6 [AJKS] 67233 67320 + Ser GGA [ENA]
>W1610661046 LJST01000038 Gammaproteobacteria Halomonas sp. HL-93 (LJST) 4105 4192 + Ser GGA [ENA]
>W1610906011 LSBP01000018 Gammaproteobacteria Halomonadaceae bacterium T82-2 (LSBP) 60173 60260 + Ser GGA [ENA]
>W1611053052 MAJD01000001 Gammaproteobacteria Halomonas elongata (MAJD) 1315907 1315820 - Ser GGA [ENA]
>W1710080905 BDEO01000002 Gammaproteobacteria Halomonas sinaiensis (BDEO) 114784 114697 - Ser GGA [ENA]
>W1710080980 BDEP01000013 Gammaproteobacteria Halomonas caseinilytica (BDEP) 120652 120565 - Ser GGA [ENA]
>W1710516115 FNCI01000008 Gammaproteobacteria Halomonas taeanensis (FNCI) 22417 22330 - Ser GGA [ENA]
>W1710519398 FNES01000001 Gammaproteobacteria Halomonas gudaonensis (FNES) 174757 174844 + Ser GGA [ENA]
>W1710521296 FNGH01000004 Gammaproteobacteria Halomonas pantelleriensis (FNGH) 205396 205483 + Ser GGA [ENA]
>W1710524571 FNIV01000005 Gammaproteobacteria Halomonas shengliensis (FNIV) 2211 2124 - Ser GGA [ENA]
>W1710544857 FOBC01000005 Gammaproteobacteria Halomonas daqiaonensis (FOBC) 128602 128515 - Ser GGA [ENA]
>W1710545755 FOBT01000006 Gammaproteobacteria Halomonas caseinilytica (FOBT) 120973 120886 - Ser GGA [ENA]
>W1710558498 FOLY01000002 Gammaproteobacteria Kushneria avicenniae (FOLY) 641843 641930 + Ser GGA [ENA]
>W1710582931 FQUJ01000006 Gammaproteobacteria Halomonas ilicicola DSM 19980 (FQUJ) 164623 164710 + Ser GGA [ENA]
>W1710589827 FRAL01000007 Gammaproteobacteria Halomonas sinaiensis (FRAL) 118978 119065 + Ser GGA [ENA]
>W1710591835 FRCA01000001 Gammaproteobacteria Halomonas cupida (FRCA) 67330 67417 + Ser GGA [ENA]
Identical group No.187500 (11 seq.)
>W131063624 ANKZ01000001 Gammaproteobacteria Spiribacter salinus M19-40 [ANKZ] 910511 910427 - Leu GAG [ENA]
>W131171442 ARGF01000054 Gammaproteobacteria Arhodomonas aquaeolei DSM 8974 [ARGF] 73137 73221 + Leu GAG [ENA]
>w014154 AAOF01000015 Gammaproteobacteria Nitrococcus mobilis Nb-231 [AAOF] 33173 33092 - Leu GAG [ENA]
>ENV08001177 ABMR01015178 saltern metagenome; microbial fraction from medium salinity saltern in San Diego, CA 18 102 + Leu GAG [ENA]
>WENV170682764 LFIK01001125 [LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5 20352 20436 + Leu GAG [ENA]
>WENV170701835 LKMJ01000046 [LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake 34434 34518 + Leu GAG [ENA]
>WENV170703509 LKMJ01012841 [LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake 6492 6408 - Leu GAG [ENA]
>SRA1001242 SRR001057.12773 Solar Salterns, microbial fraction from medium salinity saltern in San Diego, CA (SRP000147) 18 102 + Leu GAG [SRA]
>W1810586386 QFFI01000007 Gammaproteobacteria Spiribacter sp. E85 (QFFI) 69457 69541 + Leu GAG [ENA]
>C131016218 CP005963 Gammaproteobacteria Spiribacter salinus M19-40 629209 629293 + Leu GAG [Ensembl]
>W1710549084 FOEG01000002 Gammaproteobacteria Aquisalimonas asiatica (FOEG) 348065 347981 - Leu GAG [ENA]
Identical group No.247424 (7 seq.)
>ENV08001178 ABMR01015205 saltern metagenome; microbial fraction from medium salinity saltern in San Diego, CA 91 17 - Glu CTC [ENA]
>ENV08001842 ABOG01025749 saltern metagenome; microbial fraction from medium salinity saltern in San Diego, CA 33 107 + Glu CTC [ENA]
>ENV08001862 ABOG01045449 saltern metagenome; microbial fraction from medium salinity saltern in San Diego, CA 89 15 - Glu CTC [ENA]
>WENV170679538 LFCJ01000015 [LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1 84367 84441 + Glu CTC [ENA]
>WENV170680111 LFCJ01004179 [LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1 389 315 - Glu CTC [ENA]
>WENV170704137 LKMJ01023495 [LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake 77 3 - Glu CTC [ENA]
>SRA1001243 SRR001057.13154 Solar Salterns, microbial fraction from medium salinity saltern in San Diego, CA (SRP000147) 91 17 - Glu CTC [SRA]
Identical group No.320984 (2 seq.)
>ENV08001181 ABMR01024922 saltern metagenome; microbial fraction from medium salinity saltern in San Diego, CA 96 22 - Ile GAT [ENA]
>SRA1001239 SRR001057.3917 Solar Salterns, microbial fraction from medium salinity saltern in San Diego, CA (SRP000147) 96 22 - Ile GAT [SRA]
Identical group No.374191 (2 seq.)
>ENV08001175 ABMR01008827 saltern metagenome; microbial fraction from medium salinity saltern in San Diego, CA 10 86 + Asn GTT [ENA]
>SRA1001244 SRR001058.5326 Solar Salterns, microbial fraction from medium salinity saltern in San Diego, CA (SRP000147) 10 86 + Asn GTT [SRA]
Identical group No.506342 (8 seq.)
>ENV08001176 ABMR01012762 saltern metagenome; microbial fraction from medium salinity saltern in San Diego, CA 93 18 - Arg CCG [ENA]
>ENV08001817 ABOG01012225 saltern metagenome; microbial fraction from medium salinity saltern in San Diego, CA 93 21 - Arg CCG [ENA]
>W1910006695 BBJO01000005 Euryarchaeota Halobellus rufus CBA1103 (BBJO) 37569 37497 - Arg CCG [ENA]
>W1910228445 FNPB01000018 Euryarchaeota Halobellus clavatus CGMCC 1.10118 (FNPB) 20359 20287 - Arg CCG [ENA]
>W1911709656 QPLR01000007 Euryarchaeota Halobellus sp. Atlit-31R (QPLR) 30194 30121 - Arg CCG [ENA]
>W1911769977 QXIJ01000003 Euryarchaeota Halobellus sp. Atlit-38R (QXIJ) 366902 366974 + Arg CCG [ENA]
>SRA1001247 SRR001058.10846 Solar Salterns, microbial fraction from medium salinity saltern in San Diego, CA (SRP000147) 93 18 - Arg CCG [SRA]
>SRA1013797 SRR023631.22153 High saltern (Pond 5) microbes attempt 1 (SRP001107) 86 11 - Arg CCG [SRA]
Identical group No.685901 (1 seq.)
>SRA1001238 SRR001057.3500 Solar Salterns, microbial fraction from medium salinity saltern in San Diego, CA (SRP000147) 72 -1 - Gln TTG [SRA]
Identical group No.685902 (2 seq.)
>ENV08001174 ABMR01004028 saltern metagenome; microbial fraction from medium salinity saltern in San Diego, CA 7 81 + Glu CTC [ENA]
>SRA1001240 SRR001057.6458 Solar Salterns, microbial fraction from medium salinity saltern in San Diego, CA (SRP000147) 7 81 + Glu CTC [SRA]
Identical group No.685903 (2 seq.)
>ENV08001179 ABMR01018468 saltern metagenome; microbial fraction from medium salinity saltern in San Diego, CA 86 12 - Ala TGC [ENA]
>SRA1001241 SRR001057.8845 Solar Salterns, microbial fraction from medium salinity saltern in San Diego, CA (SRP000147) 86 12 - Ala TGC [SRA]
Identical group No.689796 (12 seq.)
>W1711272867 LZFQ01000040 Alphaproteobacteria Donghicola sp. JL3646 (LZFQ) 143544 143618 + Thr GGT [ENA]
>C171081205 CP018572 Alphaproteobacteria Marivivens sp. JLT3646 (CP018572) 2351293 2351367 + Thr GGT -
>WENV180635392 OCRD01020013 [OCRD] marine metagenome; seawater 215 141 - Thr GGT [ENA]
>ENV08001180 ABMR01021912 saltern metagenome; microbial fraction from medium salinity saltern in San Diego, CA 76 2 - Thr GGT [ENA]
>C181049387 CP021114 Alphaproteobacteria Rhodobacteraceae bacterium G7 (CP021114) 363399 363325 - Thr GGT -
>W1910212574 FMJB01000040 Alphaproteobacteria Donghicola sp. KarMa (FMJB) 188954 188880 - Thr GGT [ENA]
>W1910500562 FXZK01000003 Alphaproteobacteria Loktanella marina CECT 8899 (FXZK) 367520 367446 - Thr GGT [ENA]
>SRA1001248 SRR001058.10985 Solar Salterns, microbial fraction from medium salinity saltern in San Diego, CA (SRP000147) 76 2 - Thr GGT [SRA]
>W1810364948 PVTQ01000002 Alphaproteobacteria Donghicola tyrosinivorans DSM 100212 (PVTQ) 429421 429347 - Thr GGT [ENA]
>W1810913123 QVMW01000007 Alphaproteobacteria Rhodobacteraceae bacterium 63075 (QVMW) 98478 98404 - Thr GGT [ENA]
>W1611032216 LZFQ01000040 Alphaproteobacteria Donghicola sp. JL3646 (LZFQ) 143544 143618 + Thr GGT [ENA]
>W1710574026 FOXY01000007 Alphaproteobacteria Donghicola eburneus (FOXY) 189084 189010 - Thr GGT [ENA]
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Sequence ID Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
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