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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
48 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV170759044
LUMS01001435
113700
Alphaproteobacteria
>WENV170759407
LUMS01019360
113700
Alphaproteobacteria
>WENV170759312
LUMS01011594
147089
Alphaproteobacteria
ACG
Arg
>WENV170759201
LUMS01005957
113716
Alphaproteobacteria
CAA
Leu
>WENV170759102
LUMS01002429
381459
Alphaproteobacteria
CAC
Val
>WENV170758826
LUMS01000016
74116
Alphaproteobacteria
CAG
Leu
>WENV170759461
LUMS01024685
144891
Alphaproteobacteria
CAT
Met
>WENV170758821
LUMS01000012
237489
Alphaproteobacteria
CAT
Met
>WENV170759130
LUMS01003464
147334
Alphaproteobacteria
CAT
Met
>WENV170759355
LUMS01015330
147334
Alphaproteobacteria
CAT
Met
>WENV170758799
LUMS01000003
237493
Alphaproteobacteria
CCA
Trp
>WENV170759199
LUMS01005885
306070
Alphaproteobacteria
CCA
Trp
>WENV170758819
LUMS01000011
191695
Alphaproteobacteria
CCT
Arg
>WENV170759187
LUMS01005465
23671
Alphaproteobacteria
CGA
Ser
>WENV170759135
LUMS01003625
23648
Alphaproteobacteria
CGA
Ser
>WENV170759177
LUMS01005192
23648
Alphaproteobacteria
CGA
Ser
>WENV170758795
LUMS01000001
258175
Alphaproteobacteria
CGC
Ala
>WENV170759399
LUMS01018494
258175
Alphaproteobacteria
CGC
Ala
>WENV170759300
LUMS01010585
412259
Alphaproteobacteria
CTG
Gln
>WENV170758828
LUMS01000017
412798
Alphaproteobacteria
CTG
Gln
>WENV170759000
LUMS01000925
338760
Alphaproteobacteria
GAA
Phe
>WENV170759154
LUMS01004350
338757
Alphaproteobacteria
GAC
Val
>WENV170759235
LUMS01007261
80918
Alphaproteobacteria
GAG
Leu
>WENV170758983
LUMS01000778
59164
Alphaproteobacteria
GAG
Leu
>WENV170759225
LUMS01006714
195945
Alphaproteobacteria
GAT
Ile
>WENV170759261
LUMS01008556
365250
Alphaproteobacteria
GCC
Gly
>WENV170758797
LUMS01000003
377327
Alphaproteobacteria
GCC
Gly
>WENV170759159
LUMS01004764
23468
Alphaproteobacteria
GCT
Ser
>WENV170758997
LUMS01000898
23672
Alphaproteobacteria
GCT
Ser
>WENV170758814
LUMS01000005
21074
Alphaproteobacteria
GGA
Ser
>WENV170759105
LUMS01002521
147083
Alphaproteobacteria
GGG
Pro
>WENV170759421
LUMS01020486
339290
Alphaproteobacteria
GGT
Thr
>WENV170758815
LUMS01000006
369678
Alphaproteobacteria
GGT
Thr
>WENV170758810
LUMS01000004
159305
Alphaproteobacteria
GTC
Asp
>WENV170759301
LUMS01010653
159305
Alphaproteobacteria
GTC
Asp
>WENV170759283
LUMS01009754
159427
Alphaproteobacteria
GTG
His
>WENV170759386
LUMS01017284
199551
Alphaproteobacteria
GTG
His
>WENV170759222
LUMS01006602
147087
Alphaproteobacteria
GTG
His
>WENV170759106
LUMS01002548
338282
Alphaproteobacteria
GTT
Asn
>WENV170759266
LUMS01008998
236256
Alphaproteobacteria
TAC
Val
>WENV170758817
LUMS01000009
95928
Alphaproteobacteria
TAG
Leu
>WENV170758838
LUMS01000032
412917
Alphaproteobacteria
TCC
Gly
>WENV170759212
LUMS01006186
157999
Alphaproteobacteria
TCT
Arg
>WENV170758820
LUMS01000011
29831
Alphaproteobacteria
TGA
Ser
>WENV170759087
LUMS01002190
147879
Alphaproteobacteria
TGG
Pro
>WENV170759185
LUMS01005462
338288
Alphaproteobacteria
TTC
Glu
>WENV170759063
LUMS01001799
237740
Alphaproteobacteria
TTT
Lys
>WENV170759423
LUMS01020716
236004
Alphaproteobacteria
TTT
Lys
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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