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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
19 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>SRA1002578
SRR001663.59033
11030
Cyanobacteriota
GCT
Ser
>SRA1002661
SRR001663.309809
11030
Cyanobacteriota
GCT
Ser
>SRA1002591
SRR001663.88099
153717
Cyanobacteriota
CAT
Met
>SRA1002594
SRR001663.97092
153717
Cyanobacteriota
CAT
Met
>SRA1002602
SRR001663.111975
153717
Cyanobacteriota
CAT
Met
>SRA1002623
SRR001663.176935
153717
Cyanobacteriota
CAT
Met
>SRA1002622
SRR001663.175329
147238
Cyanobacteriota
CCG
Arg
>SRA1002603
SRR001663.115244
344607
Cyanobacteriota
CCC
Gly
>SRA1002665
SRR001663.323711
344607
Cyanobacteriota
CCC
Gly
>SRA1002647
SRR001663.246413
349164
Cyanobacteriota
TGT
Thr
>SRA1002639
SRR001663.214825
245150
Cyanobacteriota
GTG
His
>SRA1002652
SRR001663.280801
245150
Cyanobacteriota
GTG
His
>SRA1002568
SRR001663.37880
363933
Cyanobacteriota
GTT
Asn
>SRA1002638
SRR001663.212848
363933
Cyanobacteriota
GTT
Asn
>SRA1002579
SRR001663.61355
275071
Cyanobacteriota
CCA
Trp
>SRA1002570
SRR001663.40793
237009
Cyanobacteriota
GGC
Ala
>SRA1002582
SRR001663.68320
237009
Cyanobacteriota
GGC
Ala
>SRA1002641
SRR001663.216938
237009
Cyanobacteriota
GGC
Ala
>SRA1002653
SRR001663.281585
237009
Cyanobacteriota
GGC
Ala
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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