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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
20 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>SRA1002905
SRR002326.93741
95924
Alphaproteobacteria
GAG
Leu
>SRA1003316
SRR002326.387113
251610
Alphaproteobacteria
TGC
Ala
>SRA1004282
SRR002328.245309
251610
Alphaproteobacteria
TGC
Ala
>SRA1003489
SRR002326.499335
339725
Alphaproteobacteria
GAA
Phe
>SRA1003018
SRR002326.153200
412798
Alphaproteobacteria
CTG
Gln
>SRA1003855
SRR002327.235256
412798
Alphaproteobacteria
CTG
Gln
>SRA1002839
SRR002326.52328
339464
Alphaproteobacteria
GCC
Gly
>SRA1002937
SRR002326.110128
339464
Alphaproteobacteria
GCC
Gly
>SRA1003022
SRR002326.156911
339288
Alphaproteobacteria
GAC
Val
>SRA1003479
SRR002326.492183
146577
Alphaproteobacteria
CCA
Trp
>SRA1004008
SRR002328.94245
146577
Alphaproteobacteria
CCA
Trp
>SRA1002897
SRR002326.84364
339303
Alphaproteobacteria
TGT
Thr
>SRA1003558
SRR002327.31131
23611
Alphaproteobacteria
CGA
Ser
>SRA1003652
SRR002327.96522
23611
Alphaproteobacteria
CGA
Ser
>SRA1003566
SRR002327.36294
268154
Alphaproteobacteria
TGT
Thr
>SRA1003556
SRR002327.27793
235427
Alphaproteobacteria
CCA
Trp
>SRA1003707
SRR002327.135911
235427
Alphaproteobacteria
CCA
Trp
>SRA1004165
SRR002328.179585
235427
Alphaproteobacteria
CCA
Trp
>SRA1004278
SRR002328.244579
236134
Alphaproteobacteria
TAC
Val
>SRA1003984
SRR002328.71533
417750
Alphaproteobacteria
TCC
Gly
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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