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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.148300 (92 seq.)
>W1710989791
LPWD01000209
Alphaproteobacteria
Methyloceanibacter marginalis [LPWD]
15165
15089
-
Trp
CCA
[ENA]
¡û
>W1710989842
LPWE01000012
Alphaproteobacteria
Methyloceanibacter stevinii [LPWE]
297458
297382
-
Trp
CCA
[ENA]
¡û
>W1710989858
LPWF01000003
Alphaproteobacteria
Methyloceanibacter superfactus [LPWF]
42958
42882
-
Trp
CCA
[ENA]
¡û
>W1710989932
LPWG01000013
Alphaproteobacteria
Methyloceanibacter methanicus [LPWG]
269515
269591
+
Trp
CCA
[ENA]
¡û
>W1711129976
LUUM01000312
Alphaproteobacteria
Methylosinus sp. R-45379 [LUUM]
5667
5591
-
Trp
CCA
[ENA]
¡û
>W1711228831
LXWX01000002
Alphaproteobacteria
Methylosinus sp. 3S-1 [LXWX]
28866
28790
-
Trp
CCA
[ENA]
¡û
>W1711312053
MASI01000001
Alphaproteobacteria
Methyloligella halotolerans [MASI]
101746
101822
+
Trp
CCA
[ENA]
¡û
>W1711391671
MELY01000007
Alphaproteobacteria
Alphaproteobacteria bacterium GWA2_41_27 [MELY]
8714
8638
-
Trp
CCA
[ENA]
¡û
>W1711793124
MWLJ01000010
Alphaproteobacteria
Rhodomicrobium vannielii [MWLJ]
73837
73761
-
Trp
CCA
[ENA]
¡û
>W1711793191
MWLK01000026
Alphaproteobacteria
Rhodomicrobium sp. R_RK_3 vannielii [MWLK]
74045
73969
-
Trp
CCA
[ENA]
¡û
>C171115927
CP021112
Alphaproteobacteria
Pseudorhodoplanes sinuspersici RIPI110 [CP021112]
4364692
4364768
+
Trp
CCA
-
¡û
>W131163820
ARAB01000008
Alphaproteobacteria
Methylosinus sp. LW4 [ARAB]
509915
509991
+
Trp
CCA
[ENA]
¡û
>WENV013423
AACY020369809
Marine microbial communities from Global Ocean Sampling (GOS)
104
28
-
Trp
CCA
[ENA]
>WENV180039203
LLBY010036551
[LLBY] soil metagenome; soil from tomato rhizosphere
53
129
+
Trp
CCA
[ENA]
¢þ
>WENV180065226
MPLY02049498
[MPLY] marine metagenome; 140 m water sample filtered on 0.2 um supor filter
198
274
+
Trp
CCA
[ENA]
¢þ
>WENV180257044
OBEQ010875247
[OBEQ] groundwater metagenome; groundwater
365
289
-
Trp
CCA
[ENA]
¢þ
>WENV180265535
OBEQ011667379
[OBEQ] groundwater metagenome; groundwater
795
871
+
Trp
CCA
[ENA]
¢þ
>WENV180291221
OBIV01021066
[OBIV] soil metagenome; Clay
400
324
-
Trp
CCA
[ENA]
¢þ
>WENV180342804
OBLJ01140909
[OBLJ] soil metagenome; Clay
203
279
+
Trp
CCA
[ENA]
¢þ
>WENV180690840
OCZS010028600
[OCZS] soil metagenome; soil
1185
1109
-
Trp
CCA
[ENA]
¢þ
>WENV181167304
OEIU01018929
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
49
125
+
Trp
CCA
[ENA]
¢þ
>WENV181167622
OEIU01050255
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
430
506
+
Trp
CCA
[ENA]
¢þ
>WENV181297990
OFHL01011442
[OFHL] soil metagenome; Clay
219
295
+
Trp
CCA
[ENA]
¢þ
>WENV181401931
OFTX01026900
[OFTX] sludge metagenome; sludge
7
83
+
Trp
CCA
[ENA]
¢þ
>W141148470
AWXZ01000003
Alphaproteobacteria
Lutibaculum baratangense AMV1 [AWXZ]
17
93
+
Trp
CCA
[ENA]
¡û
>W141216045
AZUO01000001
Alphaproteobacteria
Methylosinus sp. LW3 [AZUO]
2106091
2106015
-
Trp
CCA
[ENA]
¡û
>W141220796
AZYE01002213
Alphaproteobacteria
Microvirga lupini [AZYE]
25
101
+
Trp
CCA
[ENA]
¡û
>C08000297
AP009384
Alphaproteobacteria
Azorhizobium caulinodans ORS 571 [AP009384]
983455
983531
+
Trp
CCA
[Ensembl]
¡û
>W141241666
CAHM01000003
Alphaproteobacteria
Microvirga massiliensis JC119 [CAHM]
44
120
+
Trp
CCA
[ENA]
¡û
>C08006474
CP000943
Alphaproteobacteria
Methylobacterium sp. 4-46 [CP000943]
445130
445057
-
Trp
CCA
[Ensembl]
¡û
>W141276751
JAEA01000023
Alphaproteobacteria
Microvirga flocculans ATCC BAA-817 [JAEA]
435
511
+
Trp
CCA
[ENA]
¡û
>W141278501
JAFO01000001
Alphaproteobacteria
Xanthobacter sp. 126 [JAFO]
3617869
3617793
-
Trp
CCA
[ENA]
¡û
>WENV183623203
OOFX01030436
[OOFX] marine metagenome; sea ice
500
576
+
Trp
CCA
[ENA]
¢þ
>WENV183724704
PJQE01052050
[PJQE] biofilm metagenome; untreated reverse osmosis biofouled membrane
179
103
-
Trp
CCA
[ENA]
¢þ
>WENV183796003
PVBE010217274
[PVBE] marine metagenome; water
183
259
+
Trp
CCA
[ENA]
¢þ
>WENV170011225
APMI01050887
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1648
1572
-
Trp
CCA
[ENA]
¢þ
>ENV08002565
ABPX01006512
microbial mat metagenome; Guerrero Negro Hypersaline Mat 09; altitude 310m AMSL; sample depth 1m below water level, 22-34mm depth into the mat
705
629
-
Trp
CCA
[ENA]
¡û
>WENV170396277
CEUC01242796
[CEUC] marine metagenome genome assembly TARA_137_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
597
673
+
Trp
CCA
[ENA]
¢þ
>WENV170708280
LNAP01065155
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
983
1059
+
Trp
CCA
[ENA]
¢þ
>WENV170710292
LNFM01001471
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
60386
60310
-
Trp
CCA
[ENA]
¢þ
>WENV170712478
LNFM01013802
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
225
301
+
Trp
CCA
[ENA]
¢þ
>WENV170713799
LNFM01042342
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
483
559
+
Trp
CCA
[ENA]
¢þ
>WENV170820795
MDSY01011000
[MDSY] marine metagenome; seawater
27
103
+
Trp
CCA
[ENA]
¢þ
>WENV170962430
MRWF01015659
[MRWF] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
241
317
+
Trp
CCA
[ENA]
¢þ
>WENV170963283
MRWG01000074
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
6792
6716
-
Trp
CCA
[ENA]
¢þ
>W141485433
JFZJ01000063
Alphaproteobacteria
Rhodomicrobium udaipurense JA643 [JFZJ]
15751
15827
+
Trp
CCA
[ENA]
¡û
>C181020297
CP016616
Alphaproteobacteria
Microvirga ossetica V5/3M [CP016616]
4413820
4413896
+
Trp
CCA
-
¡û
>C181089617
CP023737
Alphaproteobacteria
Methylosinus trichosporium OB3b [CP023737]
686478
686554
+
Trp
CCA
-
¡û
>C181170877
CP028960
Alphaproteobacteria
Methyloceanibacter sp. wino2 [CP028960]
2973300
2973376
+
Trp
CCA
-
¡û
>C181179100
CP029481
Alphaproteobacteria
Microvirga sp. 17 mud 1-3 [CP029481]
1690999
1691075
+
Trp
CCA
-
¡û
>C181180226
CP029553
Alphaproteobacteria
Methylobacterium terrae 17Sr1-28 [CP029553]
4121730
4121654
-
Trp
CCA
-
¡û
>C191005697
AP018907
Alphaproteobacteria
Blastochloris tepida GI [AP018907]
1935113
1935037
-
Trp
CCA
-
¡û
>W141701417
JMKQ01000006
Alphaproteobacteria
Methylocystis sp. LW5 [JMKQ]
452639
452563
-
Trp
CCA
[ENA]
¡û
>W141810194
JPUG01000061
Alphaproteobacteria
Microvirga sp. BSC39 aerilata [JPUG]
1238
1314
+
Trp
CCA
[ENA]
¡û
>W141821191
JQNK01000002
Alphaproteobacteria
Methylosinus sp. PW1 [JQNK]
554124
554200
+
Trp
CCA
[ENA]
¡û
>W1910698132
MEMH01000012
Alphaproteobacteria
Alphaproteobacteria bacterium RIFCSPHIGHO2_02_FULL_42_30 [MEMH]
8707
8631
-
Trp
CCA
[ENA]
¡û
>W1911653540
QDFX01000028
Alphaproteobacteria
Rhizobiaceae bacterium CPCC 101076 [QDFX]
374
450
+
Trp
CCA
[ENA]
¡û
>W1911653592
QDGA01000048
Alphaproteobacteria
Microvirga calopogonii CCBAU 65841 [QDGA]
13335
13411
+
Trp
CCA
[ENA]
¡û
>W1911653595
QDGA01000069
Alphaproteobacteria
Microvirga calopogonii CCBAU 65841 [QDGA]
24167
24091
-
Trp
CCA
[ENA]
¡û
>W1911708756
QOZR01000024
Alphaproteobacteria
Rhodospirillaceae bacterium SYSU D60014 [QOZR]
15581
15505
-
Trp
CCA
[ENA]
¡û
>W1911765967
QXDF01000001
Alphaproteobacteria
Dichotomicrobium thermohalophilum DSM 5002 [QXDF]
2032988
2032912
-
Trp
CCA
[ENA]
¡û
>W1810330572
PUIV01000023
Alphaproteobacteria
Methylosinus sporium DSM 17706 [PUIV]
55024
55100
+
Trp
CCA
[ENA]
¡û
>W1810534750
QDAH01000080
Alphaproteobacteria
Microvirga sp. KLBC 81 [QDAH]
124
200
+
Trp
CCA
[ENA]
¡û
>W1810534752
QDAH01000142
Alphaproteobacteria
Microvirga sp. KLBC 81 [QDAH]
350
426
+
Trp
CCA
[ENA]
¡û
>W1810658593
QJJK01000006
Alphaproteobacteria
Chelatococcus asaccharovorans DSM 6462 [QJJK]
440027
439951
-
Trp
CCA
[ENA]
¡û
>W1810706702
QMKH01000014
Alphaproteobacteria
Microvirga flavescens c27j1 [QMKH]
296
372
+
Trp
CCA
[ENA]
¡û
>W1810735521
QOIO01000087
Alphaproteobacteria
Microvirga aerophila DSM 21344 [QOIO]
12959
12883
-
Trp
CCA
[ENA]
¡û
>W1810763402
QQBB01000002
Alphaproteobacteria
Microvirga subterranea DSM 14364 [QQBB]
413277
413353
+
Trp
CCA
[ENA]
¡û
>W1810763416
QQBB01000004
Alphaproteobacteria
Microvirga subterranea DSM 14364 [QQBB]
473704
473780
+
Trp
CCA
[ENA]
¡û
>C151002876
AP014648
Alphaproteobacteria
Methyloceanibacter caenitepidi Gela4 [AP014648]
2400351
2400275
-
Trp
CCA
[Ensembl]
¡û
>W10112689
ADFF01000004
Alphaproteobacteria
Rhodomicrobium vannielii ATCC 17100 [ADFF]
16977
17053
+
Trp
CCA
[ENA]
¡û
>W1510081378
CDSD01000114
Alphaproteobacteria
Microvirga massiliensis JC119 [CDSD]
15913
15837
-
Trp
CCA
[ENA]
¡û
>W10118825
ADVE01000016
Alphaproteobacteria
Methylosinus trichosporium OB3b [ADVE]
29338
29262
-
Trp
CCA
[ENA]
¡û
>W1510741148
CYHC01000020
Alphaproteobacteria
Chelatococcus sambhunathii DSM 18167 [CYHC]
17589
17513
-
Trp
CCA
[ENA]
¡û
>W11115916
ADFF01000004
Alphaproteobacteria
Rhodomicrobium vannielii ATCC 17100 [ADFF]
16977
17053
+
Trp
CCA
[ENA]
¡û
>C11119025
CP002292
Alphaproteobacteria
Rhodomicrobium vannielii ATCC 17100 [CP002292]
2890374
2890298
-
Trp
CCA
[Ensembl]
¡û
>W1511400910
JTHF01000232
Alphaproteobacteria
Methylobacterium indicum SE2.11 [JTHF]
42539
42463
-
Trp
CCA
[ENA]
¡û
>W11124997
ADVE01000016
Alphaproteobacteria
Methylosinus trichosporium OB3b [ADVE]
29338
29262
-
Trp
CCA
[ENA]
¡û
>W1511624247
LCYG01000011
Alphaproteobacteria
Microvirga vignae BR3299 [LCYG]
27002
27078
+
Trp
CCA
[ENA]
¡û
>W1511624293
LCYG01000101
Alphaproteobacteria
Microvirga vignae BR3299 [LCYG]
16089
16013
-
Trp
CCA
[ENA]
¡û
>C161001656
AP014854
Alphaproteobacteria
Blastochloris viridis DSM 133 [AP014854]
3531938
3531862
-
Trp
CCA
[Ensembl]
¡û
>C161048006
CP012946
Alphaproteobacteria
Blastochloris viridis ATCC 19567 [CP012946]
1489250
1489326
+
Trp
CCA
-
¡û
>C161108073
LN907867
Alphaproteobacteria
Blastochloris viridis [LN907867]
889222
889298
+
Trp
CCA
[Ensembl]
¡û
>W121068042
AJUA01000075
Alphaproteobacteria
Microvirga lotononidis WSM3557 [AJUA]
484902
484978
+
Trp
CCA
[ENA]
¡û
>W1610941049
LUUM01000312
Alphaproteobacteria
Methylosinus sp. R-45379 [LUUM]
5667
5591
-
Trp
CCA
[ENA]
¡û
>W1611012748
LXWX01000002
Alphaproteobacteria
Methylosinus sp. 3S-1 [LXWX]
28866
28790
-
Trp
CCA
[ENA]
¡û
>W1710507597
FMVJ01000024
Alphaproteobacteria
Microvirga guangxiensis [FMVJ]
145
221
+
Trp
CCA
[ENA]
¡û
>W1710527760
FNLG01000001
Alphaproteobacteria
Rhizobiales bacterium GAS113 [FNLG]
8881153
8881229
+
Trp
CCA
[ENA]
¡û
>W1710535706
FNSS01000001
Alphaproteobacteria
Rhizobiales bacterium GAS188 [FNSS]
2733381
2733305
-
Trp
CCA
[ENA]
¡û
>W1710535972
FNSX01000001
Alphaproteobacteria
Rhizobiales bacterium GAS191 [FNSX]
862278
862354
+
Trp
CCA
[ENA]
¡û
>W1710560681
FONO01000013
Alphaproteobacteria
Methylobacterium sp. yr596 [FONO]
1319
1395
+
Trp
CCA
[ENA]
¡û
>W1710579088
FPCB01000067
Alphaproteobacteria
Methylobacterium sp. 174MFSha1.1 [FPCB]
18537
18461
-
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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