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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.157105 (132 seq.)
>W1711056155
LRVM01000029
Bacillota
Anaerotignum neopropionicum [LRVM]
381
306
-
Ile
GAT
[ENA]
¡û
>W1711089676
LSZW01000065
Bacillota
Christensenella minuta [LSZW]
149898
149822
-
Ile
GAT
[ENA]
¡û
>W1711178679
LWGY01000003
Bacillota
Christensenella minuta [LWGY]
73171
73247
+
Ile
GAT
[ENA]
¡û
>W1711302068
MAIR01000030
Bacillota
Christensenella minuta [MAIR]
1955
2031
+
Ile
GAT
[ENA]
¡û
>W1712036421
NFHM01000039
Bacillota
Anaerotignum lactatifermentans [NFHM]
428
352
-
Ile
GAT
[ENA]
¡û
>W1712036423
NFHM01000049
Bacillota
Anaerotignum lactatifermentans [NFHM]
256
332
+
Ile
GAT
[ENA]
¡û
>C171064230
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
1207225
1207301
+
Ile
GAT
-
¡û
>C171064268
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
2611863
2611939
+
Ile
GAT
-
¡û
>C171064298
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
2954396
2954472
+
Ile
GAT
-
¡û
>C171064338
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
702365
702289
-
Ile
GAT
-
¡û
>C171064355
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
694941
694865
-
Ile
GAT
-
¡û
>C171109177
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
13051
13127
+
Ile
GAT
-
¡û
>C171109215
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
1417689
1417765
+
Ile
GAT
-
¡û
>C171109245
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
1760221
1760297
+
Ile
GAT
-
¡û
>C171109280
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
4094917
4094841
-
Ile
GAT
-
¡û
>C171109297
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
4087493
4087417
-
Ile
GAT
-
¡û
>WENV180337414
OBLG01038258
[OBLG] human gut metagenome; human gut
911
838
-
Ile
GAT
[ENA]
¢þ
>WENV180337446
OBLG01042290
[OBLG] human gut metagenome; human gut
741
665
-
Ile
GAT
[ENA]
¢þ
>WENV180454134
OBXM01006332
[OBXM] human gut metagenome; faeces
400
476
+
Ile
GAT
[ENA]
¢þ
>WENV180631729
OCQY01051682
[OCQY] human gut metagenome; human gut
528
452
-
Ile
GAT
[ENA]
¢þ
>WENV180651216
OCSZ01088324
[OCSZ] human gut metagenome; human gut
258
182
-
Ile
GAT
[ENA]
¢þ
>WENV180679084
OCVV012166141
[OCVV] gut metagenome; gut
77
1
-
Ile
GAT
[ENA]
¢þ
>WENV180679086
OCVV012166141
[OCVV] gut metagenome; gut
77
1
-
Ile
GAT
[ENA]
¢þ
>WENV180681707
OCVV012793707
[OCVV] gut metagenome; gut
248
174
-
Ile
GAT
[ENA]
¢þ
>WENV180681708
OCVV012793707
[OCVV] gut metagenome; gut
248
174
-
Ile
GAT
[ENA]
¢þ
>WENV180743004
ODHH01062653
[ODHH] human metagenome; G_DNA_Stool
524
448
-
Ile
GAT
[ENA]
¢þ
>WENV180871548
ODLN01100453
[ODLN] human metagenome; G_DNA_Stool
182
258
+
Ile
GAT
[ENA]
¢þ
>WENV181198427
OERE01001340
[OERE] metagenome; Caecal content
1475
1401
-
Ile
GAT
[ENA]
¢þ
>WENV181200843
OERL01014375
[OERL] metagenome; Caecal content
140
64
-
Ile
GAT
[ENA]
¢þ
>WENV181352848
OFMQ01035659
[OFMQ] human gut metagenome; human gut
800
724
-
Ile
GAT
[ENA]
¢þ
>WENV181560807
OGJC01008882
[OGJC] metagenome; Human gut stool
655
731
+
Ile
GAT
[ENA]
¢þ
>WENV181581766
OGKA01063291
[OGKA] metagenome; Human gut stool
395
470
+
Ile
GAT
[ENA]
¢þ
>WENV181684467
OGOV01009790
[OGOV] human gut metagenome; faeces
3729
3653
-
Ile
GAT
[ENA]
¢þ
>WENV181728066
OGQA01015252
[OGQA] human gut metagenome; faeces
2303
2227
-
Ile
GAT
[ENA]
¢þ
>WENV181728449
OGQA01066965
[OGQA] human gut metagenome; faeces
733
657
-
Ile
GAT
[ENA]
¢þ
>WENV181747584
OGQN01058756
[OGQN] human gut metagenome; faeces
763
687
-
Ile
GAT
[ENA]
¢þ
>WENV181865577
OGWU01043467
[OGWU] human gut metagenome; faeces
624
548
-
Ile
GAT
[ENA]
¢þ
>WENV181916123
OGYF01051066
[OGYF] human gut metagenome; faeces
262
338
+
Ile
GAT
[ENA]
¢þ
>WENV181984720
OHAI01045179
[OHAI] human gut metagenome; faeces
24
100
+
Ile
GAT
[ENA]
¢þ
>WENV182000402
OHAX01032575
[OHAX] human gut metagenome; faeces
401
476
+
Ile
GAT
[ENA]
¢þ
>WENV182006519
OHBF01004440
[OHBF] human gut metagenome; feces
578
654
+
Ile
GAT
[ENA]
¢þ
>WENV182046648
OHDV01010153
[OHDV] human gut metagenome; feces
465
539
+
Ile
GAT
[ENA]
¢þ
>WENV182079921
OHGG01041504
[OHGG] human gut metagenome; feces
627
551
-
Ile
GAT
[ENA]
¢þ
>WENV182082736
OHGL01014948
[OHGL] human gut metagenome; feces
58
134
+
Ile
GAT
[ENA]
¢þ
>WENV182083004
OHGN01002052
[OHGN] human gut metagenome; feces
2018
2094
+
Ile
GAT
[ENA]
¢þ
>WENV182183073
OHNU01000064
[OHNU] human gut metagenome; feces
1082
1006
-
Ile
GAT
[ENA]
¢þ
>WENV182310922
OHXP01000014
[OHXP] human gut metagenome; feces
967
1043
+
Ile
GAT
[ENA]
¢þ
>WENV182311032
OHXQ01000546
[OHXQ] human gut metagenome; feces
4003
3927
-
Ile
GAT
[ENA]
¢þ
>WENV182347203
OIAW01000902
[OIAW] human gut metagenome; feces
1992
1916
-
Ile
GAT
[ENA]
¢þ
>WENV182372467
OICX01000100
[OICX] human gut metagenome; feces
955
879
-
Ile
GAT
[ENA]
¢þ
>WENV182377869
OIDI01002116
[OIDI] human gut metagenome; feces
775
851
+
Ile
GAT
[ENA]
¢þ
>WENV182378051
OIDJ01001305
[OIDJ] human gut metagenome; feces
2151
2075
-
Ile
GAT
[ENA]
¢þ
>WENV182388278
OIEB01018058
[OIEB] human gut metagenome; feces
232
156
-
Ile
GAT
[ENA]
¢þ
>WENV182398839
OIEN01011642
[OIEN] human gut metagenome; human gut
1937
1861
-
Ile
GAT
[ENA]
¢þ
>WENV182434641
OIIY01008099
[OIIY] human gut metagenome; human gut
61
137
+
Ile
GAT
[ENA]
¢þ
>WENV182444665
OIKT01001839
[OIKT] human gut metagenome; human gut
434
510
+
Ile
GAT
[ENA]
¢þ
>WENV182461319
OINS01002725
[OINS] human gut metagenome; human gut
2078
2004
-
Ile
GAT
[ENA]
¢þ
>WENV182606533
OJJT01020962
[OJJT] metagenome; faeces
409
333
-
Ile
GAT
[ENA]
¢þ
>WENV182628605
OJKQ01019452
[OJKQ] metagenome; faeces
710
634
-
Ile
GAT
[ENA]
¢þ
>WENV182638932
OJLA01030621
[OJLA] metagenome; faeces
51
127
+
Ile
GAT
[ENA]
¢þ
>WENV182712875
OJPF01009087
[OJPF] human gut metagenome; stool sample
1901
1825
-
Ile
GAT
[ENA]
¢þ
>WENV182715637
OJPI01006252
[OJPI] human gut metagenome; stool sample
2097
2021
-
Ile
GAT
[ENA]
¢þ
>WENV182724667
OJPS01017132
[OJPS] human gut metagenome; stool sample
1862
1786
-
Ile
GAT
[ENA]
¢þ
>WENV182734102
OJQE01002512
[OJQE] human gut metagenome; stool sample
3425
3349
-
Ile
GAT
[ENA]
¢þ
>WENV182919506
OKTX01020384
[OKTX] human gut metagenome; feces
869
793
-
Ile
GAT
[ENA]
¢þ
>WENV182946473
OKVK01036761
[OKVK] human gut metagenome; human gut
107
181
+
Ile
GAT
[ENA]
¢þ
>WENV182993728
OLBA01000660
[OLBA] human gut metagenome; human gut
2590
2666
+
Ile
GAT
[ENA]
¢þ
>WENV183040109
OLGB01043688
[OLGB] human gut metagenome; faeces
821
745
-
Ile
GAT
[ENA]
¢þ
>WENV183064182
OLIH01001749
[OLIH] metagenome; faeces
3877
3801
-
Ile
GAT
[ENA]
¢þ
>WENV183064271
OLIH01003001
[OLIH] metagenome; faeces
112
36
-
Ile
GAT
[ENA]
¢þ
>WENV183068377
OLIQ01006723
[OLIQ] metagenome; faeces
2224
2148
-
Ile
GAT
[ENA]
¢þ
>WENV183085450
OLJF01004752
[OLJF] metagenome; faeces
2455
2531
+
Ile
GAT
[ENA]
¢þ
>WENV183113919
OLNP01057475
[OLNP] human gut metagenome; faeces
741
665
-
Ile
GAT
[ENA]
¢þ
>WENV183185854
OLPN01052810
[OLPN] human gut metagenome; faeces
77
1
-
Ile
GAT
[ENA]
¢þ
>WENV183231242
OLQT01063762
[OLQT] human gut metagenome; faeces
548
472
-
Ile
GAT
[ENA]
¢þ
>WENV183268894
OLRU01037828
[OLRU] human gut metagenome; faeces
464
388
-
Ile
GAT
[ENA]
¢þ
>WENV183286627
OLSE01026961
[OLSE] human gut metagenome; faeces
300
376
+
Ile
GAT
[ENA]
¢þ
>WENV183309834
OLVI01001442
[OLVI] human gut metagenome; faeces
567
493
-
Ile
GAT
[ENA]
¢þ
>WENV183424282
OMBG01040710
[OMBG] human gut metagenome; feces
831
755
-
Ile
GAT
[ENA]
¢þ
>WENV183434715
OMBZ01038790
[OMBZ] human gut metagenome; feces
349
425
+
Ile
GAT
[ENA]
¢þ
>WENV183453968
OMDE01027926
[OMDE] human gut metagenome; feces
433
357
-
Ile
GAT
[ENA]
¢þ
>WENV183468712
OMEH01003953
[OMEH] human gut metagenome; feces
2349
2425
+
Ile
GAT
[ENA]
¢þ
>WENV183474400
OMET01034583
[OMET] human gut metagenome; feces
445
369
-
Ile
GAT
[ENA]
¢þ
>WENV183479580
OMFG01003629
[OMFG] human gut metagenome; feces
94
18
-
Ile
GAT
[ENA]
¢þ
>WENV183488353
OMFY01018549
[OMFY] human gut metagenome; feces
915
839
-
Ile
GAT
[ENA]
¢þ
>WENV183655359
OQWD01014994
[OQWD] human gut metagenome; human gut
1259
1183
-
Ile
GAT
[ENA]
¢þ
>WENV183777649
PPYF01106253
[PPYF] human gut metagenome; stool from patient with Crohn's disease
2336
2260
-
Ile
GAT
[ENA]
¢þ
>WENV183792107
PPYF01451423
[PPYF] human gut metagenome; stool from patient with Crohn's disease
1242
1166
-
Ile
GAT
[ENA]
¢þ
>WENV170006745
AMWB02048908
[AMWB] bioreactor metagenome; anode biofilm in microbial fuel cells
2583
2507
-
Ile
GAT
[ENA]
¢þ
>WENV170019151
BBPD01004832
[BBPD] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
6877
6953
+
Ile
GAT
[ENA]
¢þ
>WENV170021332
BBPF01006499
[BBPF] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
431
507
+
Ile
GAT
[ENA]
¢þ
>WENV170026389
CDTW01037856
[CDTW] gut metagenome; human stools
3524
3448
-
Ile
GAT
[ENA]
¢þ
>WENV170053121
CDZD01007205
[CDZD] gut metagenome; human stools
3524
3448
-
Ile
GAT
[ENA]
¢þ
>WENV170056140
CDZF01038133
[CDZF] gut metagenome; human stools
3397
3321
-
Ile
GAT
[ENA]
¢þ
>WENV170636370
JFBN01197833
[JFBN] chicken gut metagenome; ceca of Broiler chicken
256
332
+
Ile
GAT
[ENA]
¢þ
>WENV170636425
JFBN01250313
[JFBN] chicken gut metagenome; ceca of Broiler chicken
146
71
-
Ile
GAT
[ENA]
¢þ
>WENV170637796
JFBN01361588
[JFBN] chicken gut metagenome; ceca of Broiler chicken
412
336
-
Ile
GAT
[ENA]
¢þ
>WENV170645415
JMSV01003622
[JMSV] bioreactor metagenome; Culture-2 Bioreactor Bmz derived from microbial biomass from the upper 2 cm of a marine
200
123
-
Ile
GAT
[ENA]
¢þ
>WENV170674782
LCWY01003320
[LCWY] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
1074
1150
+
Ile
GAT
[ENA]
¢þ
>WENV170674809
LCWY01006172
[LCWY] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
213
289
+
Ile
GAT
[ENA]
¢þ
>WENV170675154
LCWZ01009875
[LCWZ] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
369
293
-
Ile
GAT
[ENA]
¢þ
>WENV170675176
LCWZ01011728
[LCWZ] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
213
137
-
Ile
GAT
[ENA]
¢þ
>WENV170675226
LCWZ01018657
[LCWZ] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
208
284
+
Ile
GAT
[ENA]
¢þ
>WENV170684476
LFRM01041399
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
909
833
-
Ile
GAT
[ENA]
¢þ
>WENV170685858
LFRM01112691
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
1374
1298
-
Ile
GAT
[ENA]
¢þ
>WENV170688605
LFRM01252642
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
2156
2080
-
Ile
GAT
[ENA]
¢þ
>WENV170717861
LSQX01052503
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
449
525
+
Ile
GAT
[ENA]
¢þ
>C191063473
CP029256
Bacillota
Christensenella minuta DSM 22607 [CP029256]
468361
468437
+
Ile
GAT
-
¡û
>C191063501
CP029256
Bacillota
Christensenella minuta DSM 22607 [CP029256]
1735313
1735237
-
Ile
GAT
-
¡û
>C191189869
LR026983
Bacillota
Maliibacterium massiliense Marseille-P3954 [LR026983]
1484927
1485003
+
Ile
GAT
-
¡û
>W1910545391
FZLO01000011
Bacillota
Scatolibacter rhodanostii Marseille-P3890 [FZLO]
2190
2266
+
Ile
GAT
[ENA]
¡û
>W1910548241
FZOJ01000008
Bacillota
Anaerovirgula multivorans SCA [FZOJ]
175090
175014
-
Ile
GAT
[ENA]
¡û
>W1910548283
FZOJ01000089
Bacillota
Anaerovirgula multivorans SCA [FZOJ]
1570
1646
+
Ile
GAT
[ENA]
¡û
>W1810879786
QUJC01000032
Bacillota
Firmicutes bacterium AM29-6AC [QUJC]
386
461
+
Ile
GAT
[ENA]
¡û
>C151057265
CP009687
Bacillota
Clostridium aceticum DSM 1496 [CP009687]
1598558
1598634
+
Ile
GAT
[Ensembl]
¡û
>W1511527536
JYHU01000004
Bacillota
Clostridium aceticum DSM 1496 [JYHU]
267719
267795
+
Ile
GAT
[ENA]
¡û
>W1511585269
LAYJ01000068
Bacillota
Christensenella hongkongensis HKU16 [LAYJ]
198244
198168
-
Ile
GAT
[ENA]
¡û
>C161068641
CP014223
Bacillota
Anaerotignum propionicum DSM 1682 X2 [CP014223]
2978983
2978908
-
Ile
GAT
[Ensembl]
¡û
>C161068649
CP014223
Bacillota
Anaerotignum propionicum DSM 1682 X2 [CP014223]
2564342
2564267
-
Ile
GAT
[Ensembl]
¡û
>W1610501853
FLKP01000001
Bacillota
Christensenella timonensis Marseille-P2437 [FLKP]
334733
334657
-
Ile
GAT
[ENA]
¡û
>W1610501855
FLKP01000001
Bacillota
Christensenella timonensis Marseille-P2437 [FLKP]
3244
3168
-
Ile
GAT
[ENA]
¡û
>W1610501900
FLKP01000002
Bacillota
Christensenella timonensis Marseille-P2437 [FLKP]
3244
3168
-
Ile
GAT
[ENA]
¡û
>W1610897201
LRVM01000029
Bacillota
Anaerotignum neopropionicum [LRVM]
381
306
-
Ile
GAT
[ENA]
¡û
>W1610924133
LSZW01000065
Bacillota
Christensenella minuta [LSZW]
149898
149822
-
Ile
GAT
[ENA]
¡û
>W1610986726
LWGY01000003
Bacillota
Christensenella minuta [LWGY]
73171
73247
+
Ile
GAT
[ENA]
¡û
>W1611052856
MAIR01000030
Bacillota
Christensenella minuta [MAIR]
1955
2031
+
Ile
GAT
[ENA]
¡û
>WENV079358
AATB01007511
Gut microbiome of Mouse lean and obese (C57BL/6J; sample lean2, leptin genotype ob/+)
180
258
+
Ile
GAT
[ENA]
>W1710495323
FLKP01000001
Bacillota
Christensenella timonensis Marseille-P2437 [FLKP]
334733
334657
-
Ile
GAT
[ENA]
¡û
>W1710495325
FLKP01000001
Bacillota
Christensenella timonensis Marseille-P2437 [FLKP]
3244
3168
-
Ile
GAT
[ENA]
¡û
>W1710495370
FLKP01000002
Bacillota
Christensenella timonensis Marseille-P2437 [FLKP]
3244
3168
-
Ile
GAT
[ENA]
¡û
>W1710506711
FMUS01000070
Bacillota
Alkaliphilus peptidifermentans DSM 18978 [FMUS]
242
166
-
Ile
GAT
[ENA]
¡û
>W1710553643
FOHU01000001
Bacillota
Natronincola peptidivorans [FOHU]
517941
517865
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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