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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.24067 (40 seq.)
>W1711027048
LRDC01000001
Gammaproteobacteria
Shewanella frigidimarina [LRDC]
237731
237642
-
Ser
GGA
[ENA]
¡û
>C022021
CP000447
Gammaproteobacteria
Shewanella frigidimarina NCIMB 400 [CP000447]
2563375
2563286
-
Ser
GGA
[Ensembl]
¡û
>w021127
AAVJ01000053
Gammaproteobacteria
Shewanella pealeana ATCC 700345 [AAVJ]
18093
18184
+
Ser
GGA
[ENA]
¡û
>W141227842
BALM01000005
Gammaproteobacteria
Shewanella marina JCM 15074 [BALM]
141399
141488
+
Ser
GGA
[ENA]
¡û
>C08010229
CP000851
Gammaproteobacteria
Shewanella pealeana ATCC 700345 [CP000851]
2717655
2717569
-
Ser
GGA
[Ensembl]
¡û
>WENV182544685
OJBI01007387
[OJBI] seawater metagenome; Sea water
29
118
+
Ser
GGA
[ENA]
¢þ
>WENV182560451
OJDU01001478
[OJDU] seawater metagenome; Sea water
4678
4767
+
Ser
GGA
[ENA]
¢þ
>WENV182575656
OJFV01002922
[OJFV] seawater metagenome; Sea water
475
564
+
Ser
GGA
[ENA]
¢þ
>WENV182578821
OJGP01005337
[OJGP] seawater metagenome; Sea water
1050
961
-
Ser
GGA
[ENA]
¢þ
>WENV182579738
OJGT01000102
[OJGT] seawater metagenome; Sea water
10898
10809
-
Ser
GGA
[ENA]
¢þ
>C08009903
CP000931
Gammaproteobacteria
Shewanella halifaxensis HAW-EB4 [CP000931]
2702926
2702840
-
Ser
GGA
[Ensembl]
¡û
>W141276562
JADX01000009
Gammaproteobacteria
Shewanella fidelis ATCC BAA-318 [JADX]
137440
137529
+
Ser
GGA
[ENA]
¡û
>WENV183056247
OLHI01002695
[OLHI] seawater metagenome; Sea water
1806
1895
+
Ser
GGA
[ENA]
¢þ
>WENV183064953
OLII01005048
[OLII] seawater metagenome; Sea water
1887
1976
+
Ser
GGA
[ENA]
¢þ
>WENV170022806
BCQK01052292
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
493
404
-
Ser
GGA
[ENA]
¢þ
>WENV170646605
JQIA01000244
[JQIA] marine sediment metagenome; oil-polluted sediment collected from 3 locations (0.5 km, 0.7 km and 0.9 km) around wellhead
25788
25699
-
Ser
GGA
[ENA]
¢þ
>WENV170704742
LLEM01002419
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
601
512
-
Ser
GGA
[ENA]
¢þ
>WENV170704857
LLEN01004610
[LLEN] bioreactor metagenome; day86 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
378
289
-
Ser
GGA
[ENA]
¢þ
>WENV170780975
MAAB01028906
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
4712
4623
-
Ser
GGA
[ENA]
¢þ
>WENV170781181
MAAB01029622
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
26585
26674
+
Ser
GGA
[ENA]
¢þ
>WENV170782483
MAAC01010146
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
4713
4624
-
Ser
GGA
[ENA]
¢þ
>WENV170782537
MAAC01010181
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
41596
41507
-
Ser
GGA
[ENA]
¢þ
>WENV170822095
MDSY01034003
[MDSY] marine metagenome; seawater
1759
1848
+
Ser
GGA
[ENA]
¢þ
>W09103154
AAIV01000049
Gammaproteobacteria
Shewanella frigidimarina NCIMB 400 [AAIV]
10459
10370
-
Ser
GGA
[ENA]
¡û
>C191117201
CP034015
Gammaproteobacteria
Shewanella livingstonensis LMG 19866 [CP034015]
2414536
2414625
+
Ser
GGA
-
¡û
>C191155985
CP037952
Gammaproteobacteria
Parashewanella spongiae HJ039 [CP037952]
2257534
2257623
+
Ser
GGA
-
¡û
>C191173219
CP039928
Gammaproteobacteria
Shewanella sp. MEBiC00475 [CP039928]
4716298
4716209
-
Ser
GGA
-
¡û
>C191185854
CP041036
Gammaproteobacteria
Shewanella polaris SM1901 [CP041036]
2099943
2100032
+
Ser
GGA
-
¡û
>C09109841
CP000472
Gammaproteobacteria
Shewanella piezotolerans WP3 [CP000472]
2729707
2729618
-
Ser
GGA
[Ensembl]
¡û
>W1911809491
QYYH01000068
Gammaproteobacteria
Parashewanella spongiae KCTC 22492 [QYYH]
15878
15967
+
Ser
GGA
[ENA]
¡û
>W1810005573
BFBQ01000002
Gammaproteobacteria
Shewanella halifaxensis 6JANF4-E-4 [BFBQ]
1046083
1046172
+
Ser
GGA
[ENA]
¡û
>W1810155295
PJAP01000214
Gammaproteobacteria
Shewanella sp. 11B5 [PJAP]
204
293
+
Ser
GGA
[ENA]
¡û
>W1810155940
PJAZ01000060
Gammaproteobacteria
Shewanella sp. Bg11-22 [PJAZ]
33773
33862
+
Ser
GGA
[ENA]
¡û
>W1810156285
PJBE01000013
Gammaproteobacteria
Shewanella sp. Choline-02u-19 [PJBE]
1441800
1441711
-
Ser
GGA
[ENA]
¡û
>W1810156714
PJBL01000026
Gammaproteobacteria
Shewanella sp. GutCb [PJBL]
44298
44209
-
Ser
GGA
[ENA]
¡û
>W1810156772
PJBM01000192
Gammaproteobacteria
Shewanella sp. GutDb-MelDb [PJBM]
1534
1623
+
Ser
GGA
[ENA]
¡û
>W1810157765
PJCD01000003
Gammaproteobacteria
Shewanella sp. ALD9 [PJCD]
1039316
1039405
+
Ser
GGA
[ENA]
¡û
>W1810157844
PJCE01000001
Gammaproteobacteria
Shewanella sp. Actino-trap-3 [PJCE]
740289
740378
+
Ser
GGA
[ENA]
¡û
>WENV031368
AACY021360589
Marine microbial communities from Global Ocean Sampling (GOS)
250
341
+
Ser
GGA
[ENA]
>W1610875160
LRDC01000001
Gammaproteobacteria
Shewanella frigidimarina [LRDC]
237731
237642
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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