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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.253656 (83 seq.)
>W1710979371
LPNY01000209
Campylobacterota
Arcobacter sp. EP1 [LPNY]
177590
177515
-
Trp
CCA
[ENA]
¡û
>W1711484274
MKCO01000004
Campylobacterota
Poseidonibacter lekithochrous LFT 1.7 [MKCO]
18771
18846
+
Trp
CCA
[ENA]
¡û
>C171088966
CP019070
Campylobacterota
Poseidonibacter parvus LPB0137 [CP019070]
2365604
2365529
-
Trp
CCA
-
¡û
>WENV180043327
LQAH01028990
[LQAH] bioreactor metagenome; bioreactor_4 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
176
101
-
Trp
CCA
[ENA]
¢þ
>WENV180283933
OBID01006806
[OBID] metagenome; sludge
1639
1564
-
Trp
CCA
[ENA]
¢þ
>WENV180391260
OBPM01065202
[OBPM] marine metagenome; ENVO:00002010
275
350
+
Trp
CCA
[ENA]
¢þ
>C08000275
CP000361
Campylobacterota
Aliarcobacter butzleri RM4018 [CP000361]
1896346
1896274
-
Trp
CCA
[Ensembl]
¡û
>WENV182555508
OJDB01000545
[OJDB] seawater metagenome; Sea water
175
100
-
Trp
CCA
[ENA]
¢þ
>WENV182589149
OJHZ01000039
[OJHZ] seawater metagenome; Sea water
3332
3257
-
Trp
CCA
[ENA]
¢þ
>WENV182590588
OJIJ01000025
[OJIJ] seawater metagenome; Sea water
15428
15503
+
Trp
CCA
[ENA]
¢þ
>WENV183714575
PDWI01192399
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
159
234
+
Trp
CCA
[ENA]
¢þ
>WENV183714684
PDWI01197760
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
274
349
+
Trp
CCA
[ENA]
¢þ
>WENV183715938
PDWI01275577
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
179
254
+
Trp
CCA
[ENA]
¢þ
>WENV183720914
PDWJ01049179
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
322
397
+
Trp
CCA
[ENA]
¢þ
>WENV183721794
PDWJ01087079
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
144
219
+
Trp
CCA
[ENA]
¢þ
>WENV170012434
ASRK01000011
[ASRK] bioreactor metagenome; day 48 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
1706
1781
+
Trp
CCA
[ENA]
¢þ
>WENV170012513
ASRL01000013
[ASRL] bioreactor metagenome; day 67 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
71783
71708
-
Trp
CCA
[ENA]
¢þ
>WENV170012653
ASRN01000014
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
64489
64414
-
Trp
CCA
[ENA]
¢þ
>WENV170012686
ASRN01001057
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
3286
3211
-
Trp
CCA
[ENA]
¢þ
>WENV170012758
ASRO01000084
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
1783
1858
+
Trp
CCA
[ENA]
¢þ
>WENV170012840
ASRP01000741
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
1783
1858
+
Trp
CCA
[ENA]
¢þ
>WENV170012899
ASRP01012559
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
345
420
+
Trp
CCA
[ENA]
¢þ
>WENV170012932
ASRQ01000035
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
57805
57730
-
Trp
CCA
[ENA]
¢þ
>WENV170012945
ASRQ01000140
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
1783
1858
+
Trp
CCA
[ENA]
¢þ
>WENV170013023
ASRR01000188
[ASRR] bioreactor metagenome; day 185 samples from continuous culture bioreactor inoculated with sediment from the German Wadden
5601
5526
-
Trp
CCA
[ENA]
¢þ
>WENV170014440
AYRG01000115
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
1783
1858
+
Trp
CCA
[ENA]
¢þ
>WENV170014446
AYRG01000171
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
14127
14052
-
Trp
CCA
[ENA]
¢þ
>WENV170635271
JDSF01000556
[JDSF] bioreactor metagenome; continuous culture bioreactor denitrification-DNRA
4660
4735
+
Trp
CCA
[ENA]
¢þ
>WENV170646370
JQGR01000301
[JQGR] bioreactor metagenome; continuous culture inoculated with microbial biomass from the upper 2 cm of a marine
4602
4527
-
Trp
CCA
[ENA]
¢þ
>WENV170646443
JQGR01004700
[JQGR] bioreactor metagenome; continuous culture inoculated with microbial biomass from the upper 2 cm of a marine
684
609
-
Trp
CCA
[ENA]
¢þ
>WENV170654875
JRYL01057939
[JRYL] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater from different
677
602
-
Trp
CCA
[ENA]
¢þ
>WENV170655841
JTFN01082152
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
189
114
-
Trp
CCA
[ENA]
¢þ
>WENV170704216
LLEJ01000027
[LLEJ] bioreactor metagenome; day101 10degC chemostat 2011 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
6019
6094
+
Trp
CCA
[ENA]
¢þ
>WENV170704634
LLEL01016044
[LLEL] bioreactor metagenome; day35 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
244
319
+
Trp
CCA
[ENA]
¢þ
>WENV170704881
LLEN01009155
[LLEN] bioreactor metagenome; day86 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
238
313
+
Trp
CCA
[ENA]
¢þ
>WENV170782972
MAAC01012278
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
3026
2951
-
Trp
CCA
[ENA]
¢þ
>WENV170927430
MDTG01117063
[MDTG] marine metagenome; seawater
496
571
+
Trp
CCA
[ENA]
¢þ
>C181196931
CP031217
Campylobacterota
Halarcobacter bivalviorum LMG 26154 [CP031217]
365108
365183
+
Trp
CCA
-
¡û
>C181197053
CP031219
Campylobacterota
Malaciobacter mytili LMG 24559 [CP031219]
2332152
2332077
-
Trp
CCA
-
¡û
>C181225272
LT906455
Campylobacterota
Aliarcobacter butzleri NCTC 12481 [LT906455]
1896339
1896264
-
Trp
CCA
-
¡û
>C191084497
CP032098
Campylobacterota
Malaciobacter molluscorum LMG 25693 CECT 7696 [CP032098]
2309425
2309350
-
Trp
CCA
-
¡û
>C191084663
CP032101
Campylobacterota
Malaciobacter marinus JCM 15502 [CP032101]
2387297
2387222
-
Trp
CCA
-
¡û
>C191147192
CP035928
Campylobacterota
Malaciobacter pacificus LMG 26638 [CP035928]
2132984
2132909
-
Trp
CCA
-
¡û
>C191178292
CP040507
Campylobacterota
Aliarcobacter butzleri JV22 [CP040507]
1850043
1849968
-
Trp
CCA
-
¡û
>W1911200288
NREP01000011
Campylobacterota
Arcobacter venerupis CECT7836 [NREP]
126688
126613
-
Trp
CCA
[ENA]
¡û
>W1911413055
NWVW01000006
Campylobacterota
Malaciobacter canalis F138-33 [NWVW]
20554
20629
+
Trp
CCA
[ENA]
¡û
>W1911413125
NWVX01000022
Campylobacterota
Malaciobacter marinus F140-37 [NWVX]
20635
20710
+
Trp
CCA
[ENA]
¡û
>W1911419369
NXAO01000015
Campylobacterota
Malaciobacter marinus CECT 7727 [NXAO]
118107
118032
-
Trp
CCA
[ENA]
¡û
>W1911424192
NXFY01000025
Campylobacterota
Malaciobacter molluscorum CECT 7696 F98-3 [NXFY]
17176
17101
-
Trp
CCA
[ENA]
¡û
>W1911426181
NXID01000009
Campylobacterota
Malaciobacter mytili LMG 24559 CECT 7386 [NXID]
34197
34122
-
Trp
CCA
[ENA]
¡û
>W1911426245
NXIE01000005
Campylobacterota
Halarcobacter mediterraneus F156-34 [NXIE]
18154
18229
+
Trp
CCA
[ENA]
¡û
>W1911426403
NXIH01000022
Campylobacterota
Arcobacter defluvii CECT 7697 [NXIH]
13064
12989
-
Trp
CCA
[ENA]
¡û
>W1911426432
NXII01000007
Campylobacterota
Arcobacter cloacae CECT 7834 [NXII]
116020
115945
-
Trp
CCA
[ENA]
¡û
>W1911426475
NXIJ01000019
Campylobacterota
Arcobacter aquimarinus CECT 8442 [NXIJ]
37814
37739
-
Trp
CCA
[ENA]
¡û
>W1911576155
PDJU01000007
Campylobacterota
Arcobacter sp. F155 [PDJU]
153136
153061
-
Trp
CCA
[ENA]
¡û
>W1911576220
PDJV01000012
Campylobacterota
Arcobacter sp. F2176 [PDJV]
19085
19160
+
Trp
CCA
[ENA]
¡û
>W1911576249
PDJW01000016
Campylobacterota
Malaciobacter mytili T234 [PDJW]
29092
29017
-
Trp
CCA
[ENA]
¡û
>W1911576289
PDJX01000004
Campylobacterota
Malaciobacter molluscorum F91 [PDJX]
168218
168143
-
Trp
CCA
[ENA]
¡û
>W1911576367
PDJY01000034
Campylobacterota
Malaciobacter halophilus F166-45 [PDJY]
18078
18003
-
Trp
CCA
[ENA]
¡û
>W1911576589
PDKE01000008
Campylobacterota
Arcobacter sp. CECT 8989 [PDKE]
132155
132080
-
Trp
CCA
[ENA]
¡û
>W1911576660
PDKG01000003
Campylobacterota
Arcobacter sp. CECT 8986 [PDKG]
278786
278711
-
Trp
CCA
[ENA]
¡û
>W1911576881
PDKL01000006
Campylobacterota
Halarcobacter bivalviorum F118-4 [PDKL]
169342
169267
-
Trp
CCA
[ENA]
¡û
>W1911576925
PDKM01000006
Campylobacterota
Halarcobacter bivalviorum CECT 7835 [PDKM]
160593
160518
-
Trp
CCA
[ENA]
¡û
>W1911576974
PDKN01000006
Campylobacterota
Candidatus Marinarcus aquaticus CECT 8987 [PDKN]
20848
20923
+
Trp
CCA
[ENA]
¡û
>W1911775194
QXMK01000014
Campylobacterota
Aliarcobacter butzleri 55 [QXMK]
13316
13241
-
Trp
CCA
[ENA]
¡û
>W1810295922
PTIW01000024
Campylobacterota
Malaciobacter marinus MARC-MIP3H16 [PTIW]
20540
20615
+
Trp
CCA
[ENA]
¡û
>W1810462574
PZYW01000005
Campylobacterota
Poseidonibacter lekithochrous LMG 28652 [PZYW]
18766
18841
+
Trp
CCA
[ENA]
¡û
>C10100573
CP001999
Campylobacterota
Arcobacter nitrofigilis DSM 7299 [CP001999]
2637616
2637541
-
Trp
CCA
[Ensembl]
¡û
>C11100396
AP012047
Campylobacterota
Aliarcobacter butzleri ED-1 [AP012047]
1774452
1774377
-
Trp
CCA
[Ensembl]
¡û
>C11101062
AP012048
Campylobacterota
Arcobacter sp. L [AP012048]
2562927
2562852
-
Trp
CCA
[Ensembl]
¡û
>W1510762845
JAIQ01000129
Campylobacterota
Aliarcobacter butzleri L348 [JAIQ]
1719
1794
+
Trp
CCA
[ENA]
¡û
>W1510762856
JAIR01000026
Campylobacterota
Aliarcobacter butzleri L349 [JAIR]
19579
19504
-
Trp
CCA
[ENA]
¡û
>W1510762907
JAIS01000069
Campylobacterota
Aliarcobacter butzleri L351 [JAIS]
1720
1795
+
Trp
CCA
[ENA]
¡û
>W1510762929
JAIT01000018
Campylobacterota
Aliarcobacter butzleri L352 [JAIT]
13823
13748
-
Trp
CCA
[ENA]
¡û
>W1510762956
JAIU01000016
Campylobacterota
Aliarcobacter butzleri L353 [JAIU]
13823
13748
-
Trp
CCA
[ENA]
¡û
>W1510762992
JAIV01000061
Campylobacterota
Aliarcobacter butzleri L354 [JAIV]
17309
17234
-
Trp
CCA
[ENA]
¡û
>W1510763014
JAIW01000018
Campylobacterota
Aliarcobacter butzleri L355 [JAIW]
13823
13748
-
Trp
CCA
[ENA]
¡û
>W1510763061
JAIX01000064
Campylobacterota
Aliarcobacter butzleri L350 [JAIX]
1720
1795
+
Trp
CCA
[ENA]
¡û
>W1511517386
JXXG01000002
Campylobacterota
Halarcobacter anaerophilus IR-1 [JXXG]
256622
256697
+
Trp
CCA
[ENA]
¡û
>WENV069685
AACY023779440
Marine microbial communities from Global Ocean Sampling (GOS)
107
184
+
Trp
CCA
[ENA]
>W1610835362
LPNY01000209
Campylobacterota
Arcobacter sp. EP1 [LPNY]
177590
177515
-
Trp
CCA
[ENA]
¡û
>W1710082879
BDIR01000017
Campylobacterota
Arcobacter sp. LA11 [BDIR]
13994
13919
-
Trp
CCA
[ENA]
¡û
>W1710602815
FUYO01000001
Campylobacterota
Malaciobacter marinus [FUYO]
20528
20603
+
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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