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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.268365 (24 seq.)
>W1711393428
MEOP01000053
Bacteroidota
Bacteroidetes bacterium GWF2_43_11 [MEOP]
1962
2037
+
Gly
TCC
[ENA]
¡û
>WENV180103568
OAPA01073683
[OAPA] marine metagenome; ENVO:00002010
3
76
+
Gly
TCC
[ENA]
¡û
>WENV180729254
ODGU01300231
[ODGU] human metagenome; G_DNA_Supragingival plaque
87
160
+
Gly
TCC
[ENA]
¡û
>WENV180788436
ODIS01060885
[ODIS] human metagenome; G_DNA_Supragingival plaque
114
41
-
Gly
TCC
[ENA]
¡û
>WENV180795976
ODJB01000829
[ODJB] human metagenome; G_DNA_Supragingival plaque
13842
13769
-
Gly
TCC
[ENA]
¡û
>WENV180842933
ODKN01000131
[ODKN] human metagenome; G_DNA_Supragingival plaque
40119
40046
-
Gly
TCC
[ENA]
¡û
>WENV180951934
ODUH01078149
[ODUH] human metagenome; G_DNA_Subgingival plaque
93
20
-
Gly
TCC
[ENA]
¡û
>WENV180976825
ODUY01271217
[ODUY] human metagenome; G_DNA_Supragingival plaque
110
37
-
Gly
TCC
[ENA]
¡û
>WENV181009306
ODWE01050491
[ODWE] human metagenome; G_DNA_Supragingival plaque
730
803
+
Gly
TCC
[ENA]
¡û
>WENV181081020
OEAS01115248
[OEAS] human metagenome; G_DNA_Supragingival plaque
286
359
+
Gly
TCC
[ENA]
¡û
>WENV181090546
OEBC01001113
[OEBC] human metagenome; G_DNA_Supragingival plaque
1994
2067
+
Gly
TCC
[ENA]
¡û
>WENV181415235
OGCL01006481
[OGCL] hot springs metagenome; Hot spring water
2495
2422
-
Gly
TCC
[ENA]
¡û
>WENV183510707
OMHQ01003868
[OMHQ] human oral metagenome; human oral
467
540
+
Gly
TCC
[ENA]
¡û
>WENV170553653
CXWK01026289
[CXWK] wastewater metagenome; activated sludge
11160
11087
-
Gly
TCC
[ENA]
¡û
>WENV170979212
MTKZ01080842
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
588
661
+
Gly
TCC
[ENA]
¡û
>W141526492
JHBV01000027
Bacteroidota
Aureispira sp. CCB-QB1 [JHBV]
48452
48527
+
Gly
TCC
[ENA]
¡û
>W2010520998
JAANIG010000003
Bacteroidota
Bacteroidales bacterium M08MB [JAANIG]
154349
154276
-
Gly
TCC
[ENA]
¡û
>C231538777
CP110854
Bacteroidota
Saprospira grandis WH [CP110854]
2283828
2283901
+
Gly
TCC
-
¡û
>C231582849
CP116808
Bacteroidota
Saprospira sp. CCB-QB6 [CP116808]
2249109
2249182
+
Gly
TCC
-
¡û
>C241008891
AP026867
Bacteroidota
Aureispira anguillae EL160426 [AP026867]
5738415
5738342
-
Gly
TCC
-
¡û
>C121003032
CP002831
Bacteroidota
Saprospira grandis str. Lewin [CP002831]
2339273
2339348
+
Gly
TCC
[Ensembl]
¡û
>W121017438
AGRT01000023
Bacteroidota
Saprospira grandis DSM 2844 [AGRT]
177612
177537
-
Gly
TCC
[ENA]
¡û
>W1710511322
FMYP01000001
Bacteroidota
Williamwhitmania taraxaci A7P-90m [FMYP]
163897
163970
+
Gly
TCC
[ENA]
¡û
>W1710511351
FMYP01000060
Bacteroidota
Williamwhitmania taraxaci A7P-90m [FMYP]
6586
6511
-
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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