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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001803)
Anticodon = CGA
HIT:
38 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.9988 (3 seq.)
>WENV170607732
FUWD010853036
[FUWD] metagenome; unknown
99
6
-
Ser
CGA
[ENA]
¢þ
>SRA1018468
SRR035082.295963
454 Sequencing (SRP001803)
305
398
+
Ser
CGA
[SRA]
>SRA1019574
SRR035082.480024
454 Sequencing (SRP001803)
99
6
-
Ser
CGA
[SRA]
Identical group No.24651 (4 seq.)
>WENV170603278
FUWD010298307
[FUWD] metagenome; unknown
670
579
-
Ser
CGA
[ENA]
¢þ
>SRA1017890
SRR035082.210885
454 Sequencing (SRP001803)
403
312
-
Ser
CGA
[SRA]
>SRA1042574
SRR035091.410760
454 Sequencing (SRP001812)
242
333
+
Ser
CGA
[SRA]
>SRA1049786
SRR035095.138360
454 Sequencing (SRP001816)
22
113
+
Ser
CGA
[SRA]
Identical group No.24685 (2 seq.)
>WENV170611649
FUWD012365976
[FUWD] metagenome; unknown
114
23
-
Ser
CGA
[ENA]
¢þ
>SRA1018957
SRR035082.376126
454 Sequencing (SRP001803)
444
353
-
Ser
CGA
[SRA]
Identical group No.29614 (1 seq.)
>SRA1017232
SRR035082.103294
454 Sequencing (SRP001803)
351
262
-
Ser
CGA
[SRA]
Identical group No.29615 (1 seq.)
>SRA1017384
SRR035082.131187
454 Sequencing (SRP001803)
427
518
+
Ser
CGA
[SRA]
Identical group No.29621 (1 seq.)
>SRA1018597
SRR035082.318215
454 Sequencing (SRP001803)
39
129
+
Ser
CGA
[SRA]
Identical group No.30412 (4 seq.)
>WENV170622229
FUWD013093573
[FUWD] metagenome; unknown
96
8
-
Ser
CGA
[ENA]
¢þ
>WENV170630433
FUWD013308435
[FUWD] metagenome; unknown
2412
2500
+
Ser
CGA
[ENA]
¢þ
>SRA1018316
SRR035082.272392
454 Sequencing (SRP001803)
283
195
-
Ser
CGA
[SRA]
>SRA1026695
SRR035085.262187
454 Sequencing (SRP001806)
205
293
+
Ser
CGA
[SRA]
Identical group No.37807 (5 seq.)
>WENV170621225
FUWD013052937
[FUWD] metagenome; unknown
854
764
-
Ser
CGA
[ENA]
¢þ
>WENV170629811
FUWD013282543
[FUWD] metagenome; unknown
4752
4662
-
Ser
CGA
[ENA]
¢þ
>SRA1017747
SRR035082.189534
454 Sequencing (SRP001803)
50
140
+
Ser
CGA
[SRA]
>SRA1018708
SRR035082.335791
454 Sequencing (SRP001803)
50
140
+
Ser
CGA
[SRA]
>SRA1049982
SRR035095.171652
454 Sequencing (SRP001816)
210
300
+
Ser
CGA
[SRA]
Identical group No.44644 (1 seq.)
>SRA1017259
SRR035082.106659
454 Sequencing (SRP001803)
437
527
+
Ser
CGA
[SRA]
Identical group No.44646 (1 seq.)
>SRA1017816
SRR035082.202143
454 Sequencing (SRP001803)
285
197
-
Ser
CGA
[SRA]
Identical group No.44648 (1 seq.)
>SRA1018143
SRR035082.245480
454 Sequencing (SRP001803)
203
292
+
Ser
CGA
[SRA]
Identical group No.45864 (75 seq.)
>C018277
CP000607
Chlorobiota
Chlorobium phaeovibrioides [CP000607]
671308
671222
-
Ser
CGA
[Ensembl]
¡û
>WENV170613648
FUWD012815672
[FUWD] metagenome; unknown
954
867
-
Ser
CGA
[ENA]
¢þ
>WENV170614861
FUWD012843185
[FUWD] metagenome; unknown
231
142
-
Ser
CGA
[ENA]
¢þ
>W09103339
AAJD01000001
Chlorobiota
Chlorobium phaeovibrioides DSM 265 [AAJD]
290114
290027
-
Ser
CGA
[ENA]
¡û
>SRA1018617
SRR035082.323272
454 Sequencing (SRP001803)
186
99
-
Ser
CGA
[SRA]
>SRA1020168
SRR035083.65597
454 Sequencing (SRP001804)
187
100
-
Ser
CGA
[SRA]
>SRA1020211
SRR035083.74874
454 Sequencing (SRP001804)
2
89
+
Ser
CGA
[SRA]
>SRA1020328
SRR035083.97491
454 Sequencing (SRP001804)
248
161
-
Ser
CGA
[SRA]
>SRA1020355
SRR035083.101244
454 Sequencing (SRP001804)
383
470
+
Ser
CGA
[SRA]
>SRA1020453
SRR035083.117886
454 Sequencing (SRP001804)
248
161
-
Ser
CGA
[SRA]
>SRA1020631
SRR035083.143169
454 Sequencing (SRP001804)
170
257
+
Ser
CGA
[SRA]
>SRA1020850
SRR035083.172977
454 Sequencing (SRP001804)
247
160
-
Ser
CGA
[SRA]
>SRA1020910
SRR035083.183777
454 Sequencing (SRP001804)
175
88
-
Ser
CGA
[SRA]
>SRA1021268
SRR035083.233721
454 Sequencing (SRP001804)
142
55
-
Ser
CGA
[SRA]
>SRA1021296
SRR035083.238462
454 Sequencing (SRP001804)
2
89
+
Ser
CGA
[SRA]
>SRA1021486
SRR035083.264975
454 Sequencing (SRP001804)
76
163
+
Ser
CGA
[SRA]
>SRA1021528
SRR035083.269768
454 Sequencing (SRP001804)
227
140
-
Ser
CGA
[SRA]
>SRA1021573
SRR035083.274911
454 Sequencing (SRP001804)
153
66
-
Ser
CGA
[SRA]
>SRA1021674
SRR035083.291168
454 Sequencing (SRP001804)
2
89
+
Ser
CGA
[SRA]
>SRA1021725
SRR035083.297770
454 Sequencing (SRP001804)
137
224
+
Ser
CGA
[SRA]
>SRA1021782
SRR035083.307980
454 Sequencing (SRP001804)
170
257
+
Ser
CGA
[SRA]
>SRA1021838
SRR035083.315367
454 Sequencing (SRP001804)
182
269
+
Ser
CGA
[SRA]
>SRA1021845
SRR035083.316909
454 Sequencing (SRP001804)
260
173
-
Ser
CGA
[SRA]
>SRA1021895
SRR035083.326032
454 Sequencing (SRP001804)
255
168
-
Ser
CGA
[SRA]
>SRA1021965
SRR035083.332538
454 Sequencing (SRP001804)
136
223
+
Ser
CGA
[SRA]
>SRA1022018
SRR035083.339812
454 Sequencing (SRP001804)
289
376
+
Ser
CGA
[SRA]
>SRA1022096
SRR035083.353177
454 Sequencing (SRP001804)
188
101
-
Ser
CGA
[SRA]
>SRA1022128
SRR035083.356460
454 Sequencing (SRP001804)
136
223
+
Ser
CGA
[SRA]
>SRA1022192
SRR035083.366402
454 Sequencing (SRP001804)
2
89
+
Ser
CGA
[SRA]
>SRA1022313
SRR035083.387122
454 Sequencing (SRP001804)
231
318
+
Ser
CGA
[SRA]
>SRA1022319
SRR035083.388543
454 Sequencing (SRP001804)
164
77
-
Ser
CGA
[SRA]
>SRA1022409
SRR035083.401887
454 Sequencing (SRP001804)
115
28
-
Ser
CGA
[SRA]
>SRA1022465
SRR035083.409044
454 Sequencing (SRP001804)
177
264
+
Ser
CGA
[SRA]
>SRA1022472
SRR035083.410561
454 Sequencing (SRP001804)
136
223
+
Ser
CGA
[SRA]
>SRA1022633
SRR035083.435416
454 Sequencing (SRP001804)
153
66
-
Ser
CGA
[SRA]
>SRA1022755
SRR035083.454326
454 Sequencing (SRP001804)
170
257
+
Ser
CGA
[SRA]
>SRA1023001
SRR035083.503100
454 Sequencing (SRP001804)
17
104
+
Ser
CGA
[SRA]
>SRA1032010
SRR035087.530095
454 Sequencing (SRP001808)
174
261
+
Ser
CGA
[SRA]
>SRA1032712
SRR035088.85422
454 Sequencing (SRP001809)
71
158
+
Ser
CGA
[SRA]
>SRA1033197
SRR035088.194694
454 Sequencing (SRP001809)
133
46
-
Ser
CGA
[SRA]
>SRA1033810
SRR035088.361644
454 Sequencing (SRP001809)
208
121
-
Ser
CGA
[SRA]
>SRA1034800
SRR035089.175675
454 Sequencing (SRP001810)
227
140
-
Ser
CGA
[SRA]
>SRA1035155
SRR035089.248820
454 Sequencing (SRP001810)
158
71
-
Ser
CGA
[SRA]
>SRA1035653
SRR035089.349665
454 Sequencing (SRP001810)
227
140
-
Ser
CGA
[SRA]
>SRA1035833
SRR035089.384809
454 Sequencing (SRP001810)
247
160
-
Ser
CGA
[SRA]
>SRA1036925
SRR035090.39658
454 Sequencing (SRP001811)
143
56
-
Ser
CGA
[SRA]
>SRA1036980
SRR035090.51463
454 Sequencing (SRP001811)
127
40
-
Ser
CGA
[SRA]
>SRA1037194
SRR035090.91293
454 Sequencing (SRP001811)
270
183
-
Ser
CGA
[SRA]
>SRA1037683
SRR035090.173884
454 Sequencing (SRP001811)
97
10
-
Ser
CGA
[SRA]
>SRA1037756
SRR035090.189246
454 Sequencing (SRP001811)
212
125
-
Ser
CGA
[SRA]
>SRA1038174
SRR035090.258309
454 Sequencing (SRP001811)
279
366
+
Ser
CGA
[SRA]
>SRA1038211
SRR035090.265595
454 Sequencing (SRP001811)
246
159
-
Ser
CGA
[SRA]
>SRA1038215
SRR035090.266359
454 Sequencing (SRP001811)
221
308
+
Ser
CGA
[SRA]
>SRA1038358
SRR035090.291392
454 Sequencing (SRP001811)
246
159
-
Ser
CGA
[SRA]
>SRA1038429
SRR035090.302940
454 Sequencing (SRP001811)
197
110
-
Ser
CGA
[SRA]
>SRA1038468
SRR035090.311214
454 Sequencing (SRP001811)
171
84
-
Ser
CGA
[SRA]
>SRA1038622
SRR035090.338693
454 Sequencing (SRP001811)
183
96
-
Ser
CGA
[SRA]
>SRA1038750
SRR035090.359715
454 Sequencing (SRP001811)
269
182
-
Ser
CGA
[SRA]
>SRA1039088
SRR035090.422553
454 Sequencing (SRP001811)
144
231
+
Ser
CGA
[SRA]
>SRA1039140
SRR035090.431249
454 Sequencing (SRP001811)
118
205
+
Ser
CGA
[SRA]
>SRA1039219
SRR035090.446466
454 Sequencing (SRP001811)
132
45
-
Ser
CGA
[SRA]
>SRA1039271
SRR035090.455240
454 Sequencing (SRP001811)
279
192
-
Ser
CGA
[SRA]
>SRA1039288
SRR035090.459082
454 Sequencing (SRP001811)
190
103
-
Ser
CGA
[SRA]
>SRA1039571
SRR035090.518294
454 Sequencing (SRP001811)
249
162
-
Ser
CGA
[SRA]
>SRA1039704
SRR035090.549321
454 Sequencing (SRP001811)
169
256
+
Ser
CGA
[SRA]
>SRA1042854
SRR035091.456188
454 Sequencing (SRP001812)
201
114
-
Ser
CGA
[SRA]
>SRA1046763
SRR035093.378306
454 Sequencing (SRP001814)
71
158
+
Ser
CGA
[SRA]
>SRA1051704
SRR035098.61345
454 Sequencing (SRP001819)
280
193
-
Ser
CGA
[SRA]
>SRA1052244
SRR035098.166566
454 Sequencing (SRP001819)
87
174
+
Ser
CGA
[SRA]
>SRA1053096
SRR035098.335301
454 Sequencing (SRP001819)
87
174
+
Ser
CGA
[SRA]
>SRA1054041
SRR035099.40553
454 Sequencing (SRP001820)
87
174
+
Ser
CGA
[SRA]
>SRA1054055
SRR035099.44197
454 Sequencing (SRP001820)
242
155
-
Ser
CGA
[SRA]
>SRA1054585
SRR035099.168074
454 Sequencing (SRP001820)
28
115
+
Ser
CGA
[SRA]
>SRA1054679
SRR035099.186690
454 Sequencing (SRP001820)
417
504
+
Ser
CGA
[SRA]
>SRA1054826
SRR035099.224055
454 Sequencing (SRP001820)
310
397
+
Ser
CGA
[SRA]
Identical group No.57987 (2 seq.)
>WENV170612646
FUWD012650165
[FUWD] metagenome; unknown
242
329
+
Ser
CGA
[ENA]
¢þ
>SRA1018227
SRR035082.258337
454 Sequencing (SRP001803)
216
305
+
Ser
CGA
[SRA]
Identical group No.70899 (1 seq.)
>SRA1017351
SRR035082.124196
454 Sequencing (SRP001803)
455
366
-
Ser
CGA
[SRA]
Identical group No.70900 (1 seq.)
>SRA1017356
SRR035082.125549
454 Sequencing (SRP001803)
255
166
-
Ser
CGA
[SRA]
Identical group No.70903 (1 seq.)
>SRA1017606
SRR035082.166823
454 Sequencing (SRP001803)
273
362
+
Ser
CGA
[SRA]
Identical group No.70911 (1 seq.)
>SRA1018273
SRR035082.267417
454 Sequencing (SRP001803)
382
293
-
Ser
CGA
[SRA]
Identical group No.70915 (1 seq.)
>SRA1018657
SRR035082.329170
454 Sequencing (SRP001803)
161
250
+
Ser
CGA
[SRA]
Identical group No.70919 (1 seq.)
>SRA1018824
SRR035082.353832
454 Sequencing (SRP001803)
366
280
-
Ser
CGA
[SRA]
Identical group No.79237 (5 seq.)
>WENV170608133
FUWD010895771
[FUWD] metagenome; unknown
630
542
-
Ser
CGA
[ENA]
¢þ
>SRA1016701
SRR035082.7956
454 Sequencing (SRP001803)
305
217
-
Ser
CGA
[SRA]
>SRA1019578
SRR035082.480860
454 Sequencing (SRP001803)
284
196
-
Ser
CGA
[SRA]
>SRA1044061
SRR035092.216877
454 Sequencing (SRP001813)
55
143
+
Ser
CGA
[SRA]
>SRA1045038
SRR035092.397880
454 Sequencing (SRP001813)
54
142
+
Ser
CGA
[SRA]
Identical group No.85881 (1 seq.)
>SRA1017295
SRR035082.113641
454 Sequencing (SRP001803)
82
170
+
Ser
CGA
[SRA]
Identical group No.85883 (1 seq.)
>SRA1017484
SRR035082.147701
454 Sequencing (SRP001803)
215
301
+
Ser
CGA
[SRA]
Identical group No.85899 (1 seq.)
>SRA1016676
SRR035082.382
454 Sequencing (SRP001803)
172
257
+
Ser
CGA
[SRA]
Identical group No.98431 (4 seq.)
>WENV170601374
FUWD010169248
[FUWD] metagenome; unknown
749
662
-
Ser
CGA
[ENA]
¢þ
>SRA1017423
SRR035082.137063
454 Sequencing (SRP001803)
430
343
-
Ser
CGA
[SRA]
>SRA1043582
SRR035092.141737
454 Sequencing (SRP001813)
346
433
+
Ser
CGA
[SRA]
>SRA1048179
SRR035094.123466
454 Sequencing (SRP001815)
101
188
+
Ser
CGA
[SRA]
Identical group No.98535 (3 seq.)
>WENV170611648
FUWD012365972
[FUWD] metagenome; unknown
221
133
-
Ser
CGA
[ENA]
¢þ
>SRA1018956
SRR035082.376098
454 Sequencing (SRP001803)
269
181
-
Ser
CGA
[SRA]
>SRA1042799
SRR035091.449074
454 Sequencing (SRP001812)
221
133
-
Ser
CGA
[SRA]
Identical group No.98538 (3 seq.)
>WENV170611700
FUWD012377623
[FUWD] metagenome; unknown
335
250
-
Ser
CGA
[ENA]
¢þ
>SRA1019734
SRR035082.514003
454 Sequencing (SRP001803)
372
287
-
Ser
CGA
[SRA]
>SRA1041762
SRR035091.289735
454 Sequencing (SRP001812)
335
250
-
Ser
CGA
[SRA]
Identical group No.98618 (4 seq.)
>WENV170623038
FUWD013133888
[FUWD] metagenome; unknown
807
722
-
Ser
CGA
[ENA]
¢þ
>WENV170631272
FUWD013346934
[FUWD] metagenome; unknown
807
722
-
Ser
CGA
[ENA]
¢þ
>SRA1018225
SRR035082.258329
454 Sequencing (SRP001803)
112
27
-
Ser
CGA
[SRA]
>SRA1049431
SRR035095.77098
454 Sequencing (SRP001816)
34
119
+
Ser
CGA
[SRA]
Identical group No.110551 (1 seq.)
>SRA1017300
SRR035082.114856
454 Sequencing (SRP001803)
408
321
-
Ser
CGA
[SRA]
Identical group No.110553 (1 seq.)
>SRA1017333
SRR035082.120101
454 Sequencing (SRP001803)
395
308
-
Ser
CGA
[SRA]
Identical group No.110587 (1 seq.)
>SRA1019427
SRR035082.455245
454 Sequencing (SRP001803)
14
101
+
Ser
CGA
[SRA]
Identical group No.110592 (1 seq.)
>SRA1019547
SRR035082.475347
454 Sequencing (SRP001803)
163
76
-
Ser
CGA
[SRA]
Identical group No.151024 (1 seq.)
>SRA1018823
SRR035082.353723
454 Sequencing (SRP001803)
228
311
+
Ser
CGA
[SRA]
Identical group No.151041 (1 seq.)
>SRA1019593
SRR035082.483722
454 Sequencing (SRP001803)
92
178
+
Ser
CGA
[SRA]
Identical group No.151055 (1 seq.)
>SRA1017336
SRR035082.120427
454 Sequencing (SRP001803)
256
342
+
Ser
CGA
[SRA]
Identical group No.157496 (6 seq.)
>WENV170613369
FUWD012800133
[FUWD] metagenome; unknown
148
233
+
Ser
CGA
[ENA]
¢þ
>WENV170626505
FUWD013223964
[FUWD] metagenome; unknown
267
184
-
Ser
CGA
[ENA]
¢þ
>SRA1017918
SRR035082.213887
454 Sequencing (SRP001803)
335
418
+
Ser
CGA
[SRA]
>SRA1030278
SRR035087.254876
454 Sequencing (SRP001808)
267
184
-
Ser
CGA
[SRA]
>SRA1033141
SRR035088.181650
454 Sequencing (SRP001809)
69
152
+
Ser
CGA
[SRA]
>SRA1049824
SRR035095.143692
454 Sequencing (SRP001816)
198
115
-
Ser
CGA
[SRA]
Identical group No.178248 (1 seq.)
>SRA1019606
SRR035082.487212
454 Sequencing (SRP001803)
289
374
+
Ser
CGA
[SRA]
Identical group No.219636 (4 seq.)
>WENV170620842
FUWD013041031
[FUWD] metagenome; unknown
1036
1117
+
Ser
CGA
[ENA]
¢þ
>WENV170628997
FUWD013258121
[FUWD] metagenome; unknown
2814
2733
-
Ser
CGA
[ENA]
¢þ
>SRA1018602
SRR035082.319430
454 Sequencing (SRP001803)
71
152
+
Ser
CGA
[SRA]
>SRA1030646
SRR035087.308797
454 Sequencing (SRP001808)
159
240
+
Ser
CGA
[SRA]
Identical group No.230761 (2 seq.)
>SRA1018831
SRR035082.354343
454 Sequencing (SRP001803)
130
50
-
Ser
CGA
[SRA]
>SRA1042966
SRR035092.7786
454 Sequencing (SRP001813)
10
90
+
Ser
CGA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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