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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001808)
Anticodon = CGA
HIT:
28 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.6084 (1 seq.)
>SRA1030619
SRR035087.305992
454 Sequencing (SRP001808)
9
102
+
Ser
CGA
[SRA]
Identical group No.13437 (1 seq.)
>SRA1029794
SRR035087.182198
454 Sequencing (SRP001808)
309
217
-
Ser
CGA
[SRA]
Identical group No.13439 (1 seq.)
>SRA1031509
SRR035087.440793
454 Sequencing (SRP001808)
88
180
+
Ser
CGA
[SRA]
Identical group No.21411 (1 seq.)
>SRA1028802
SRR035087.10536
454 Sequencing (SRP001808)
109
200
+
Ser
CGA
[SRA]
Identical group No.21418 (1 seq.)
>SRA1030173
SRR035087.237804
454 Sequencing (SRP001808)
79
167
+
Ser
CGA
[SRA]
Identical group No.21423 (1 seq.)
>SRA1031120
SRR035087.377001
454 Sequencing (SRP001808)
357
267
-
Ser
CGA
[SRA]
Identical group No.21428 (1 seq.)
>SRA1031527
SRR035087.444047
454 Sequencing (SRP001808)
132
223
+
Ser
CGA
[SRA]
Identical group No.21430 (1 seq.)
>SRA1031793
SRR035087.488407
454 Sequencing (SRP001808)
295
386
+
Ser
CGA
[SRA]
Identical group No.21434 (1 seq.)
>SRA1032116
SRR035087.555810
454 Sequencing (SRP001808)
258
167
-
Ser
CGA
[SRA]
Identical group No.32920 (1 seq.)
>SRA1028784
SRR035087.4281
454 Sequencing (SRP001808)
200
110
-
Ser
CGA
[SRA]
Identical group No.32922 (1 seq.)
>SRA1028872
SRR035087.27433
454 Sequencing (SRP001808)
81
172
+
Ser
CGA
[SRA]
Identical group No.32923 (1 seq.)
>SRA1028986
SRR035087.53248
454 Sequencing (SRP001808)
317
405
+
Ser
CGA
[SRA]
Identical group No.32924 (1 seq.)
>SRA1028991
SRR035087.54690
454 Sequencing (SRP001808)
92
2
-
Ser
CGA
[SRA]
Identical group No.32934 (1 seq.)
>SRA1031261
SRR035087.401835
454 Sequencing (SRP001808)
119
29
-
Ser
CGA
[SRA]
Identical group No.32939 (1 seq.)
>SRA1032289
SRR035087.596433
454 Sequencing (SRP001808)
338
248
-
Ser
CGA
[SRA]
Identical group No.32944 (1 seq.)
>SRA1031224
SRR035087.395026
454 Sequencing (SRP001808)
401
490
+
Ser
CGA
[SRA]
Identical group No.49606 (1 seq.)
>SRA1030974
SRR035087.356707
454 Sequencing (SRP001808)
63
150
+
Ser
CGA
[SRA]
Identical group No.49646 (1 seq.)
>SRA1031066
SRR035087.367577
454 Sequencing (SRP001808)
366
280
-
Ser
CGA
[SRA]
Identical group No.74737 (1 seq.)
>SRA1030550
SRR035087.294611
454 Sequencing (SRP001808)
104
16
-
Ser
CGA
[SRA]
Identical group No.74740 (1 seq.)
>SRA1030695
SRR035087.315802
454 Sequencing (SRP001808)
268
182
-
Ser
CGA
[SRA]
Identical group No.74745 (1 seq.)
>SRA1031116
SRR035087.375967
454 Sequencing (SRP001808)
343
255
-
Ser
CGA
[SRA]
Identical group No.74750 (1 seq.)
>SRA1031538
SRR035087.446425
454 Sequencing (SRP001808)
430
342
-
Ser
CGA
[SRA]
Identical group No.90533 (1 seq.)
>SRA1029061
SRR035087.67921
454 Sequencing (SRP001808)
132
46
-
Ser
CGA
[SRA]
Identical group No.90569 (1 seq.)
>SRA1030602
SRR035087.303420
454 Sequencing (SRP001808)
93
180
+
Ser
CGA
[SRA]
Identical group No.90594 (1 seq.)
>SRA1031803
SRR035087.491626
454 Sequencing (SRP001808)
220
307
+
Ser
CGA
[SRA]
Identical group No.118369 (1 seq.)
>SRA1031627
SRR035087.462152
454 Sequencing (SRP001808)
495
409
-
Ser
CGA
[SRA]
Identical group No.186070 (1 seq.)
>SRA1029296
SRR035087.104485
454 Sequencing (SRP001808)
281
197
-
Ser
CGA
[SRA]
Identical group No.219660 (1 seq.)
>SRA1028974
SRR035087.50100
454 Sequencing (SRP001808)
152
232
+
Ser
CGA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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