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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001808)
Anticodon = GGA
HIT:
31 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.8755 (1 seq.)
>SRA1030954
SRR035087.354145
454 Sequencing (SRP001808)
301
208
-
Ser
GGA
[SRA]
Identical group No.21412 (1 seq.)
>SRA1028826
SRR035087.15886
454 Sequencing (SRP001808)
227
137
-
Ser
GGA
[SRA]
Identical group No.21419 (1 seq.)
>SRA1030361
SRR035087.267646
454 Sequencing (SRP001808)
379
470
+
Ser
GGA
[SRA]
Identical group No.21426 (1 seq.)
>SRA1031416
SRR035087.426964
454 Sequencing (SRP001808)
205
114
-
Ser
GGA
[SRA]
Identical group No.21429 (1 seq.)
>SRA1031541
SRR035087.446781
454 Sequencing (SRP001808)
35
125
+
Ser
GGA
[SRA]
Identical group No.21437 (1 seq.)
>SRA1032186
SRR035087.571496
454 Sequencing (SRP001808)
123
214
+
Ser
GGA
[SRA]
Identical group No.32927 (1 seq.)
>SRA1029370
SRR035087.118179
454 Sequencing (SRP001808)
232
322
+
Ser
GGA
[SRA]
Identical group No.32935 (1 seq.)
>SRA1031503
SRR035087.440119
454 Sequencing (SRP001808)
338
248
-
Ser
GGA
[SRA]
Identical group No.49582 (1 seq.)
>SRA1028781
SRR035087.2094
454 Sequencing (SRP001808)
167
78
-
Ser
GGA
[SRA]
Identical group No.49595 (1 seq.)
>SRA1029921
SRR035087.202153
454 Sequencing (SRP001808)
467
378
-
Ser
GGA
[SRA]
Identical group No.49596 (1 seq.)
>SRA1029957
SRR035087.208608
454 Sequencing (SRP001808)
428
341
-
Ser
GGA
[SRA]
Identical group No.49611 (1 seq.)
>SRA1031337
SRR035087.414696
454 Sequencing (SRP001808)
274
185
-
Ser
GGA
[SRA]
Identical group No.49618 (1 seq.)
>SRA1031794
SRR035087.489096
454 Sequencing (SRP001808)
101
190
+
Ser
GGA
[SRA]
Identical group No.49623 (1 seq.)
>SRA1032401
SRR035087.622604
454 Sequencing (SRP001808)
223
312
+
Ser
GGA
[SRA]
Identical group No.74720 (1 seq.)
>SRA1029051
SRR035087.65414
454 Sequencing (SRP001808)
188
100
-
Ser
GGA
[SRA]
Identical group No.74722 (1 seq.)
>SRA1029179
SRR035087.87795
454 Sequencing (SRP001808)
371
457
+
Ser
GGA
[SRA]
Identical group No.74741 (1 seq.)
>SRA1030873
SRR035087.341810
454 Sequencing (SRP001808)
408
496
+
Ser
GGA
[SRA]
Identical group No.74747 (1 seq.)
>SRA1031170
SRR035087.384476
454 Sequencing (SRP001808)
413
501
+
Ser
GGA
[SRA]
Identical group No.74758 (1 seq.)
>SRA1032360
SRR035087.611820
454 Sequencing (SRP001808)
31
119
+
Ser
GGA
[SRA]
Identical group No.90529 (1 seq.)
>SRA1028861
SRR035087.25119
454 Sequencing (SRP001808)
212
125
-
Ser
GGA
[SRA]
Identical group No.90540 (1 seq.)
>SRA1029429
SRR035087.125763
454 Sequencing (SRP001808)
235
322
+
Ser
GGA
[SRA]
Identical group No.90563 (1 seq.)
>SRA1030423
SRR035087.278393
454 Sequencing (SRP001808)
208
123
-
Ser
GGA
[SRA]
Identical group No.90576 (1 seq.)
>SRA1030845
SRR035087.337912
454 Sequencing (SRP001808)
397
310
-
Ser
GGA
[SRA]
Identical group No.90589 (1 seq.)
>SRA1031556
SRR035087.449428
454 Sequencing (SRP001808)
439
352
-
Ser
GGA
[SRA]
Identical group No.90598 (1 seq.)
>SRA1031972
SRR035087.523310
454 Sequencing (SRP001808)
394
478
+
Ser
GGA
[SRA]
Identical group No.90601 (1 seq.)
>SRA1032093
SRR035087.551128
454 Sequencing (SRP001808)
381
294
-
Ser
GGA
[SRA]
Identical group No.118290 (1 seq.)
>SRA1029014
SRR035087.58253
454 Sequencing (SRP001808)
110
24
-
Ser
GGA
[SRA]
Identical group No.118300 (1 seq.)
>SRA1029457
SRR035087.130227
454 Sequencing (SRP001808)
285
202
-
Ser
GGA
[SRA]
Identical group No.186083 (1 seq.)
>SRA1030241
SRR035087.247958
454 Sequencing (SRP001808)
131
214
+
Ser
GGA
[SRA]
Identical group No.219629 (1 seq.)
>SRA1029332
SRR035087.110352
454 Sequencing (SRP001808)
1
83
+
Ser
GGA
[SRA]
Identical group No.219641 (1 seq.)
>SRA1031521
SRR035087.443165
454 Sequencing (SRP001808)
108
188
+
Ser
GGA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK