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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acidithiobacillia
Anticodon = GGA
HIT:
7 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.21744 (1 seq.)
>W141262916
CCCS020000035
Acidithiobacillia
Acidithiobacillus ferrivorans [CCCS]
243812
243721
-
Ser
GGA
[ENA]
¡û
Identical group No.30770 (51 seq.)
>W1710777629
LJBT01000003
Acidithiobacillia
Acidithiobacillus ferrooxidans [LJBT]
46333
46243
-
Ser
GGA
[ENA]
¡û
>W1711010494
LQRJ01000070
Acidithiobacillia
Acidithiobacillus ferrooxidans [LQRJ]
14875
14965
+
Ser
GGA
[ENA]
¡û
>W1711168348
LVXZ01000101
Acidithiobacillia
Acidithiobacillus ferrooxidans [LVXZ]
335
425
+
Ser
GGA
[ENA]
¡û
>W1711169895
LVZL01000093
Acidithiobacillia
Acidithiobacillus ferrivorans [LVZL]
81914
82004
+
Ser
GGA
[ENA]
¡û
>W1711190241
LWRY01000037
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRY]
51647
51557
-
Ser
GGA
[ENA]
¡û
>W1711190389
LWRZ01000374
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
2458
2548
+
Ser
GGA
[ENA]
¡û
>W1711190398
LWSA01000031
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSA]
916
1006
+
Ser
GGA
[ENA]
¡û
>W1711190537
LWSB01000151
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
44350
44260
-
Ser
GGA
[ENA]
¡û
>W1711190626
LWSC01000230
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSC]
15166
15256
+
Ser
GGA
[ENA]
¡û
>W1711190705
LWSD01000192
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
44350
44260
-
Ser
GGA
[ENA]
¡û
>W1711220208
LXQG01000102
Acidithiobacillia
Acidithiobacillus caldus [LXQG]
13429
13519
+
Ser
GGA
[ENA]
¡û
>W1711292968
LZYE01000197
Acidithiobacillia
Acidithiobacillus caldus [LZYE]
37607
37697
+
Ser
GGA
[ENA]
¡û
>W1711293015
LZYF01000156
Acidithiobacillia
Acidithiobacillus caldus [LZYF]
1313
1223
-
Ser
GGA
[ENA]
¡û
>W1711293058
LZYG01000157
Acidithiobacillia
Acidithiobacillus caldus [LZYG]
947
857
-
Ser
GGA
[ENA]
¡û
>W1711293116
LZYI01000003
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
15180
15270
+
Ser
GGA
[ENA]
¡û
>W1711312185
MASQ01000141
Acidithiobacillia
Acidithiobacillus ferrivorans [MASQ]
18828
18918
+
Ser
GGA
[ENA]
¡û
>W1711585809
MOAD01000001
Acidithiobacillia
Acidithiobacillus albertensis [MOAD]
983451
983541
+
Ser
GGA
[ENA]
¡û
>W131231754
AUIS01000001
Acidithiobacillia
Thermithiobacillus tepidarius DSM 3134 [AUIS]
239433
239523
+
Ser
GGA
[ENA]
¡û
>WENV181296192
OFHJ01012950
[OFHJ] soil metagenome; Clay
1038
948
-
Ser
GGA
[ENA]
¢þ
>WENV181406246
OGCG01000045
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
22802
22712
-
Ser
GGA
[ENA]
¢þ
>W141206756
AZMO01000002
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
15163
15253
+
Ser
GGA
[ENA]
¡û
>W141262911
CCCS020000034
Acidithiobacillia
Acidithiobacillus ferrivorans [CCCS]
33562
33472
-
Ser
GGA
[ENA]
¡û
>C08000409
CP001132
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 53993 [CP001132]
1551894
1551984
+
Ser
GGA
[Ensembl]
¡û
>WENV170008373
AOMP01000821
[AOMP] mine drainage metagenome; low temperature acidic, metal-polluted mine stream
335
425
+
Ser
GGA
[ENA]
¢þ
>WENV170008633
AOMQ01010424
[AOMQ] mine drainage metagenome; low temperature acidic, metal-polluted mine stream
92
2
-
Ser
GGA
[ENA]
¢þ
>C181130834
CP026328
Acidithiobacillia
Acidithiobacillus caldus MTH-04 [CP026328]
1805450
1805360
-
Ser
GGA
-
¡û
>C191005118
AP018795
Acidithiobacillia
Acidithiobacillus ferridurans JCM 18981 [AP018795]
2784045
2784135
+
Ser
GGA
-
¡û
>W09134924
ACVD01000087
Acidithiobacillia
Acidithiobacillus caldus ATCC 51756 [ACVD]
2539
2449
-
Ser
GGA
[ENA]
¡û
>W09134929
ACVD01000116
Acidithiobacillia
Acidithiobacillus caldus ATCC 51756 [ACVD]
360
270
-
Ser
GGA
[ENA]
¡û
>W141695595
JMEB01000189
Acidithiobacillia
Acidithiobacillus thiooxidans [JMEB]
2268
2178
-
Ser
GGA
[ENA]
¡û
>W141738834
JNNH01000320
Acidithiobacillia
Acidithiobacillus ferrooxidans ferriphilum [JNNH]
1429
1339
-
Ser
GGA
[ENA]
¡û
>W1910831856
MXAV01000044
Acidithiobacillia
Acidithiobacillus marinus SH [MXAV]
116828
116918
+
Ser
GGA
[ENA]
¡û
>C09100362
CP001219
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 23270 [CP001219]
1670787
1670877
+
Ser
GGA
[Ensembl]
¡û
>W1810257113
PQJK01000001
Acidithiobacillia
Acidithiobacillus ferridurans IO-2C [PQJK]
319923
319833
-
Ser
GGA
[ENA]
¡û
>W1810679309
QKQP01000013
Acidithiobacillia
Acidithiobacillus ferrooxidans CCM 4253 [QKQP]
28387
28297
-
Ser
GGA
[ENA]
¡û
>C151007970
CP005986
Acidithiobacillia
Acidithiobacillus caldus ATCC 51756 [CP005986]
1687150
1687060
-
Ser
GGA
[Ensembl]
¡û
>C151007971
CP005986
Acidithiobacillia
Acidithiobacillus caldus ATCC 51756 [CP005986]
1582021
1581931
-
Ser
GGA
[Ensembl]
¡û
>W10127963
AEFB01000189
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
7019
7109
+
Ser
GGA
[ENA]
¡û
>C11100513
CP002573
Acidithiobacillia
Acidithiobacillus caldus SM-1 [CP002573]
1880369
1880279
-
Ser
GGA
[Ensembl]
¡û
>C11100728
CP002985
Acidithiobacillia
Acidithiobacillus ferrivorans SS3 [CP002985]
1464512
1464602
+
Ser
GGA
[Ensembl]
¡û
>W11135508
AEFB01000189
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
7015
7105
+
Ser
GGA
[ENA]
¡û
>W11164274
AFJD01000005
Acidithiobacillia
Acidithiobacillus ferrivorans SS3 [AFJD]
20490
20400
-
Ser
GGA
[ENA]
¡û
>W11168542
AFOH01000084
Acidithiobacillia
Acidithiobacillus thiooxidans ATCC 19377 [AFOH]
3945
3855
-
Ser
GGA
[ENA]
¡û
>W1610627882
LIEB01000001
Nitrospirota
Leptospirillum sp. YQP-1 [LIEB]
46307
46217
-
Ser
GGA
[ENA]
¡û
>W1610641815
LJBT01000003
Acidithiobacillia
Acidithiobacillus ferrooxidans [LJBT]
46333
46243
-
Ser
GGA
[ENA]
¡û
>W1610859014
LQRJ01000070
Acidithiobacillia
Acidithiobacillus ferrooxidans [LQRJ]
14875
14965
+
Ser
GGA
[ENA]
¡û
>W1610978263
LVXZ01000101
Acidithiobacillia
Acidithiobacillus ferrooxidans [LVXZ]
335
425
+
Ser
GGA
[ENA]
¡û
>W1611004680
LXQG01000102
Acidithiobacillia
Acidithiobacillus caldus [LXQG]
13429
13519
+
Ser
GGA
[ENA]
¡û
>W1611057386
MASQ01000141
Acidithiobacillia
Acidithiobacillus ferrivorans [MASQ]
18828
18918
+
Ser
GGA
[ENA]
¡û
>W1710743704
LGYM01000034
Acidithiobacillia
Acidithiobacillus thiooxidans [LGYM]
4487
4397
-
Ser
GGA
[ENA]
¡û
>W1710759009
LIEB01000001
Nitrospirota
Leptospirillum sp. YQP-1 [LIEB]
46307
46217
-
Ser
GGA
[ENA]
¡û
Identical group No.38007 (4 seq.)
>W1710799187
LJUK01000104
Acidithiobacillia
Acidithiobacillales bacterium SM23_46 [LJUK]
6627
6537
-
Ser
GGA
[ENA]
¡û
>W1710799744
LJVB01000002
Acidithiobacillia
Acidithiobacillales bacterium SM1_46 [LJVB]
38756
38846
+
Ser
GGA
[ENA]
¡û
>W1610663144
LJUK01000104
Acidithiobacillia
Acidithiobacillales bacterium SM23_46 [LJUK]
6627
6537
-
Ser
GGA
[ENA]
¡û
>W1610663701
LJVB01000002
Acidithiobacillia
Acidithiobacillales bacterium SM1_46 [LJVB]
38756
38846
+
Ser
GGA
[ENA]
¡û
Identical group No.47140 (1 seq.)
>C09100395
CP001219
Acidithiobacillia
Acidithiobacillus ferrooxidans ATCC 23270 [CP001219]
1033480
1033391
-
Ser
GGA
[Ensembl]
¡û
Identical group No.53253 (6 seq.)
>W1711190363
LWRZ01000217
Acidithiobacillia
Acidithiobacillus thiooxidans [LWRZ]
8247
8336
+
Ser
GGA
[ENA]
¡û
>W1711190505
LWSB01000089
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSB]
927
1016
+
Ser
GGA
[ENA]
¡û
>W1711190715
LWSD01000254
Acidithiobacillia
Acidithiobacillus thiooxidans [LWSD]
1494
1405
-
Ser
GGA
[ENA]
¡û
>W1711293124
LZYI01000014
Acidithiobacillia
Acidithiobacillus thiooxidans [LZYI]
15738
15649
-
Ser
GGA
[ENA]
¡û
>W141206730
AZMO01000001
Acidithiobacillia
Acidithiobacillus thiooxidans A01 [AZMO]
130216
130305
+
Ser
GGA
[ENA]
¡û
>W141695559
JMEB01000106
Acidithiobacillia
Acidithiobacillus thiooxidans [JMEB]
23152
23063
-
Ser
GGA
[ENA]
¡û
Identical group No.64649 (2 seq.)
>W10127965
AEFB01000240
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
2355
2266
-
Ser
GGA
[ENA]
¡û
>W11135510
AEFB01000240
Acidithiobacillia
Acidithiobacillus sp. GGI-221 [AEFB]
2355
2266
-
Ser
GGA
[ENA]
¡û
Identical group No.107027 (2 seq.)
>W1710798670
LJTU01000032
Acidithiobacillia
Acidithiobacillales bacterium SG8_45 [LJTU]
4783
4696
-
Ser
GGA
[ENA]
¡û
>W1610662627
LJTU01000032
Acidithiobacillia
Acidithiobacillales bacterium SG8_45 [LJTU]
4783
4696
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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