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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Alphaproteobacteria
Anticodon = TCA
HIT:
7 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.140 (1 seq.)
>PL191001475
CP040764
Alphaproteobacteria
Paracoccus sp. 2251 plasmid:unnamed3 (CP040764)
47940
48036
+
Sec
TCA
[ENA]
¡û
Identical group No.3680 (15 seq.)
>W1710853399
LLWQ01000093
Alphaproteobacteria
Paracoccus sp. MKU1 [LLWQ]
3007
2912
-
SeC(p)
TCA
[ENA]
¡û
>C016024
CP000489
Alphaproteobacteria
Paracoccus denitrificans PD1222 [CP000489, CP000490]
2841628
2841537
-
SeC
TCA
[Ensembl]
¡û
>W141216614
AZVA01000002
Alphaproteobacteria
Paracoccus sp. J55 [AZVA]
300079
299985
-
SeC(p)
TCA
[ENA]
¡û
>W141277345
JAEN01000003
Alphaproteobacteria
Paracoccus sp. J39 [JAEN]
226765
226671
-
SeC(p)
TCA
[ENA]
¡û
>PL191000053
CP000489
Alphaproteobacteria
Paracoccus denitrificans PD1222 plasmid:phage/plasmid primase, P4 family (CP000489)
2841628
2841533
-
Sec
TCA
[Ensembl]
¡û
>C181203385
LN832559
Alphaproteobacteria
Paracoccus aminovorans [LN832559]
224626
224721
+
SeC
TCA
-
¡û
>C191134390
CP035090
Alphaproteobacteria
Paracoccus denitrificans ATCC 19367 [CP035090, CP035091]
1583762
1583667
-
Sec
TCA
-
¡û
>W09103057
AAIT01000006
Alphaproteobacteria
Paracoccus denitrificans PD1222 [AAIT]
189241
189146
-
SeC
TCA
[ENA]
¡û
>W1810235992
PPGA01000008
Alphaproteobacteria
Paracoccus denitrificans ISTOD1 [PPGA]
121564
121469
-
Sec
TCA
[ENA]
¡û
>W1610049851
BBFH01001079
Alphaproteobacteria
Paracoccus denitrificans JCM 21484 [BBFH]
398
493
+
SeC(p)
TCA
[ENA]
¡û
>W1610716523
LLWQ01000093
Alphaproteobacteria
Paracoccus sp. MKU1 [LLWQ]
3007
2912
-
SeC(p)
TCA
[ENA]
¡û
>W1710046250
BBFH01001079
Alphaproteobacteria
Paracoccus denitrificans JCM 21484 [BBFH]
398
493
+
SeC(p)
TCA
[ENA]
¡û
>W1710518463
FNEA01000008
Alphaproteobacteria
Paracoccus denitrificans [FNEA]
121805
121710
-
SeC(p)
TCA
[ENA]
¡û
>W1710563590
FOPU01000021
Alphaproteobacteria
Paracoccus aminovorans [FOPU]
63601
63696
+
SeC(p)
TCA
[ENA]
¡û
>W1710574684
FOYK01000008
Alphaproteobacteria
Paracoccus denitrificans [FOYK]
121805
121710
-
SeC(p)
TCA
[ENA]
¡û
Identical group No.3693 (52 seq.)
>PL171000341
CP001831
Alphaproteobacteria
Sinorhizobium meliloti SM11 plasmid:pSmeSM11c
1617547
1617452
-
SeC(p)
TCA
[ENA]
¡û
>PL171000461
CP002741
Alphaproteobacteria
Sinorhizobium meliloti BL225C plasmid:pSINMEB01
334841
334936
+
SeC(p)
TCA
[ENA]
¡û
>PL171000609
CP003936
Alphaproteobacteria
Sinorhizobium meliloti GR4 plasmid:pRmeGR4c
1402583
1402488
-
SeC(p)
TCA
[ENA]
¡û
>PL171000702
CP009145
Alphaproteobacteria
Sinorhizobium meliloti RMO17 plasmid:pSymA
1451107
1451012
-
SeC(p)
TCA
[ENA]
¡û
>PL171001393
CP019483
Alphaproteobacteria
Sinorhizobium meliloti B401 plasmid:pSymA
53100
53195
+
SeC(p)
TCA
[ENA]
¡û
>PL171001395
CP019486
Alphaproteobacteria
Sinorhizobium meliloti B399 plasmid:pSymA
15054
15149
+
SeC(p)
TCA
[ENA]
¡û
>PL171001397
CP019585
Alphaproteobacteria
Sinorhizobium meliloti plasmid:pSymA
14645
14740
+
SeC(p)
TCA
[ENA]
¡û
>PL171001482
CP021217
Alphaproteobacteria
Sinorhizobium meliloti RU11/001 plasmid:pSymA
1301113
1301208
+
SeC(p)
TCA
[ENA]
¡û
>PL171001501
CP021794
Alphaproteobacteria
Sinorhizobium meliloti USDA1157 plasmid:psymA
607452
607357
-
SeC(p)
TCA
[ENA]
¡û
>PL171001505
CP021801
Alphaproteobacteria
Sinorhizobium meliloti USDA1021 plasmid:psymA
1366453
1366358
-
SeC(p)
TCA
[ENA]
¡û
>PL171001511
CP021805
Alphaproteobacteria
Sinorhizobium meliloti T073 plasmid:psymA
376768
376863
+
SeC(p)
TCA
[ENA]
¡û
>PL171001513
CP021809
Alphaproteobacteria
Sinorhizobium meliloti Rm41 plasmid:psymA
643312
643407
+
SeC(p)
TCA
[ENA]
¡û
>PL171001515
CP021813
Alphaproteobacteria
Sinorhizobium meliloti M270 plasmid:psymA
501292
501387
+
SeC(p)
TCA
[ENA]
¡û
>PL171001518
CP021821
Alphaproteobacteria
Sinorhizobium meliloti M162 plasmid:accessoryA
160366
160461
+
SeC(p)
TCA
[ENA]
¡û
>PL171001520
CP021824
Alphaproteobacteria
Sinorhizobium meliloti KH46 plasmid:psymA
1457490
1457395
-
SeC(p)
TCA
[ENA]
¡û
>PL171001521
CP021827
Alphaproteobacteria
Sinorhizobium meliloti KH35c plasmid:psymA
170298
170203
-
SeC(p)
TCA
[ENA]
¡û
>PL171001523
CP021830
Alphaproteobacteria
Sinorhizobium meliloti HM006 plasmid:psymA
1067706
1067611
-
SeC(p)
TCA
[ENA]
¡û
>PL171001781
HE995407
Alphaproteobacteria
Sinorhizobium meliloti Rm41 plasmid:pSYMA
1543894
1543799
-
SeC(p)
TCA
[ENA]
¡û
>W131213936
ATTK01000024
Alphaproteobacteria
Sinorhizobium meliloti MVII-I [ATTK]
42292
42197
-
SeC(p)
TCA
[ENA]
¡û
>W131219117
ATYH01000007
Alphaproteobacteria
Sinorhizobium meliloti CIAM1775 [ATYH]
88191
88286
+
SeC(p)
TCA
[ENA]
¡û
>W131220100
ATZC01000015
Alphaproteobacteria
Sinorhizobium meliloti GVPV12 [ATZC]
86947
87042
+
SeC(p)
TCA
[ENA]
¡û
>W131220139
ATZD01000006
Alphaproteobacteria
Sinorhizobium meliloti Mlalz-1 [ATZD]
169961
170056
+
SeC(p)
TCA
[ENA]
¡û
>W141152008
AXBL01000040
Alphaproteobacteria
Sinorhizobium meliloti BO21CC [AXBL]
193702
193797
+
SeC(p)
TCA
[ENA]
¡û
>W141152019
AXBM01000056
Alphaproteobacteria
Sinorhizobium meliloti AK58 [AXBM]
46710
46615
-
SeC(p)
TCA
[ENA]
¡û
>W141207535
AZNW01000015
Alphaproteobacteria
Sinorhizobium meliloti WSM1022 [AZNW]
60598
60503
-
SeC(p)
TCA
[ENA]
¡û
>W141255010
CBTS010000116
Alphaproteobacteria
Sinorhizobium meliloti RU11/001 [CBTS]
22040
21945
-
SeC(p)
TCA
[ENA]
¡û
>W1910005763
AYSQ01000128
Alphaproteobacteria
Sinorhizobium meliloti CCBAU 01290 [AYSQ]
26844
26749
-
Sec
TCA
[ENA]
¡û
>W1910183024
BJNJ01000037
Alphaproteobacteria
Sinorhizobium meliloti NBRC 14782 [BJNJ]
69701
69796
+
Sec
TCA
[ENA]
¡û
>W1911412954
NWVT01000038
Alphaproteobacteria
Ensifer sp. T2_8 [NWVT]
34304
34399
+
Sec
TCA
[ENA]
¡û
>W1810357263
PVNM01000307
Alphaproteobacteria
Sinorhizobium meliloti BM806 [PVNM]
88227
88322
+
Sec
TCA
[ENA]
¡û
>W1810448723
PZMI01000025
Alphaproteobacteria
Sinorhizobium meliloti AK555 [PZMI]
166914
167009
+
Sec
TCA
[ENA]
¡û
>W1810448736
PZMJ01000014
Alphaproteobacteria
Sinorhizobium meliloti CXM1-105 [PZMJ]
249415
249510
+
Sec
TCA
[ENA]
¡û
>W10126517
AEDG01000003
Alphaproteobacteria
Sinorhizobium meliloti BL225C [AEDG]
218008
217913
-
SeC
TCA
[ENA]
¡û
>W10126597
AEDH01000023
Alphaproteobacteria
Sinorhizobium meliloti AK83 [AEDH]
354
259
-
SeC
TCA
[ENA]
¡û
>C11120816
CP002783
Alphaproteobacteria
Sinorhizobium meliloti AK83 [CP002781, CP002782, CP002783]
210058
209963
-
SeC
TCA
[Ensembl]
¡û
>W11133778
AEDG01000003
Alphaproteobacteria
Sinorhizobium meliloti BL225C [AEDG]
218008
217913
-
SeC(p)
TCA
[ENA]
¡û
>W11133858
AEDH01000023
Alphaproteobacteria
Sinorhizobium meliloti AK83 [AEDH]
354
259
-
SeC(p)
TCA
[ENA]
¡û
>W1511555780
JZXD01000053
Alphaproteobacteria
Sinorhizobium meliloti L5-30 [JZXD]
30609
30514
-
SeC
TCA
[ENA]
¡û
>W121021500
AGVV01000001
Alphaproteobacteria
Sinorhizobium meliloti CCNWSX0020 [AGVV]
118450
118355
-
SeC
TCA
[ENA]
¡û
>W121103587
AKZR01000209
Alphaproteobacteria
Sinorhizobium meliloti H1 [AKZR]
43767
43672
-
SeC
TCA
[ENA]
¡û
>W121103610
AKZS01000084
Alphaproteobacteria
Sinorhizobium meliloti C0438LL [AKZS]
69706
69801
+
SeC
TCA
[ENA]
¡û
>W121103663
AKZT01000085
Alphaproteobacteria
Sinorhizobium meliloti C0431A [AKZT]
36527
36622
+
SeC
TCA
[ENA]
¡û
>W121103745
AKZU01000601
Alphaproteobacteria
Sinorhizobium meliloti AK75 [AKZU]
1661
1756
+
SeC
TCA
[ENA]
¡û
>W121103782
AKZV01000343
Alphaproteobacteria
Sinorhizobium meliloti AK11 [AKZV]
32688
32593
-
SeC
TCA
[ENA]
¡û
>W121103818
AKZW01000071
Alphaproteobacteria
Sinorhizobium meliloti AE608H [AKZW]
111653
111748
+
SeC
TCA
[ENA]
¡û
>W121103892
AKZX01000414
Alphaproteobacteria
Sinorhizobium meliloti A0643DD [AKZX]
1935
1840
-
SeC
TCA
[ENA]
¡û
>W121103918
AKZY01000073
Alphaproteobacteria
Sinorhizobium meliloti A0641M [AKZY]
70433
70528
+
SeC
TCA
[ENA]
¡û
>W121104024
AKZZ01000106
Alphaproteobacteria
Sinorhizobium meliloti 5A14 [AKZZ]
61280
61375
+
SeC
TCA
[ENA]
¡û
>W121104042
AKZZ01000161
Alphaproteobacteria
Sinorhizobium meliloti 5A14 [AKZZ]
42089
41994
-
SeC
TCA
[ENA]
¡û
>W121104090
ALAA01000209
Alphaproteobacteria
Sinorhizobium meliloti 1A42 [ALAA]
35229
35324
+
SeC
TCA
[ENA]
¡û
>W1710530180
FNOO01000003
Alphaproteobacteria
Sinorhizobium meliloti [FNOO]
121707
121802
+
SeC(p)
TCA
[ENA]
¡û
>W1710541813
FNYP01000027
Alphaproteobacteria
Sinorhizobium meliloti [FNYP]
679
584
-
SeC(p)
TCA
[ENA]
¡û
Identical group No.5091 (4 seq.)
>PL171000001
AE006469
Alphaproteobacteria
Sinorhizobium meliloti 1021 plasmid:pSymA
15716
15811
+
SeC(p)
TCA
[ENA]
¡û
>PL171000615
CP004138
Alphaproteobacteria
Sinorhizobium meliloti 2011 plasmid:pSymA
15716
15811
+
SeC(p)
TCA
[ENA]
¡û
>PL171001503
CP021798
Alphaproteobacteria
Sinorhizobium meliloti USDA1106 plasmid:psymA
708322
708227
-
SeC(p)
TCA
[ENA]
¡û
>W131219440
ATYP01000005
Alphaproteobacteria
Sinorhizobium meliloti RRl128 [ATYP]
181953
181858
-
SeC(p)
TCA
[ENA]
¡û
Identical group No.5760 (26 seq.)
>W1710862255
LMEG01000002
Alphaproteobacteria
Ensifer sp. Root423 [LMEG]
263874
263970
+
SeC(p)
TCA
[ENA]
¡û
>W1710862621
LMEN01000005
Alphaproteobacteria
Ensifer sp. Root1298 [LMEN]
19655
19751
+
SeC(p)
TCA
[ENA]
¡û
>W1710862925
LMES01000004
Alphaproteobacteria
Ensifer sp. Root1312 [LMES]
19656
19752
+
SeC(p)
TCA
[ENA]
¡û
>W1710864706
LMGC01000004
Alphaproteobacteria
Ensifer sp. Root558 [LMGC]
164918
165014
+
SeC(p)
TCA
[ENA]
¡û
>W1710867489
LMII01000003
Alphaproteobacteria
Ensifer sp. Root74 [LMII]
19692
19788
+
SeC(p)
TCA
[ENA]
¡û
>W1710868899
LMJM01000001
Alphaproteobacteria
Ensifer sp. Root954 [LMJM]
541394
541298
-
SeC(p)
TCA
[ENA]
¡û
>W1711679647
MRVD01000015
Alphaproteobacteria
Ensifer adhaerens [MRVD]
89920
90016
+
SeC(p)
TCA
[ENA]
¡û
>PL171001180
CP015881
Alphaproteobacteria
Ensifer adhaerens Casida A plasmid:pCasidaAA
106704
106608
-
SeC(p)
TCA
[ENA]
¡û
>W141187435
AYLZ02000004
Alphaproteobacteria
Shinella sp. DD12 [AYLZ]
109356
109260
-
SeC(p)
TCA
[ENA]
¡û
>W1910891700
NEXT01000001
Alphaproteobacteria
Sinorhizobium sp. LM21 [NEXT]
532798
532702
-
Sec
TCA
[ENA]
¡û
>W1911614509
POVM01000016
Alphaproteobacteria
Sinorhizobium meliloti 320 [POVM]
176659
176563
-
Sec
TCA
[ENA]
¡û
>W1810197037
PNFP01000016
Alphaproteobacteria
Ensifer adhaerens ST2 [PNFP]
18405
18501
+
Sec
TCA
[ENA]
¡û
>W1810671979
QJTB01000003
Alphaproteobacteria
Ensifer adhaerens WJB133 25_10 [QJTB]
305616
305712
+
Sec
TCA
[ENA]
¡û
>W1810696400
QLTH01000005
Alphaproteobacteria
Ensifer adhaerens AG1206 [QLTH]
146214
146310
+
Sec
TCA
[ENA]
¡û
>W1511403334
JTLA01000116
Alphaproteobacteria
Ensifer sp. ZNC0028 [JTLA]
32628
32532
-
SeC
TCA
[ENA]
¡û
>W1610024780
AUTB01000103
Alphaproteobacteria
Sinorhizobium sp. GL2 [AUTB]
57122
57026
-
SeC(p)
TCA
[ENA]
¡û
>W1610724601
LMEG01000002
Alphaproteobacteria
Ensifer sp. Root423 [LMEG]
263874
263970
+
SeC(p)
TCA
[ENA]
¡û
>W1610724967
LMEN01000005
Alphaproteobacteria
Ensifer sp. Root1298 [LMEN]
19655
19751
+
SeC(p)
TCA
[ENA]
¡û
>W1610725271
LMES01000004
Alphaproteobacteria
Ensifer sp. Root1312 [LMES]
19656
19752
+
SeC(p)
TCA
[ENA]
¡û
>W1610727052
LMGC01000004
Alphaproteobacteria
Ensifer sp. Root558 [LMGC]
164918
165014
+
SeC(p)
TCA
[ENA]
¡û
>W1610729835
LMII01000003
Alphaproteobacteria
Ensifer sp. Root74 [LMII]
19692
19788
+
SeC(p)
TCA
[ENA]
¡û
>W1610731245
LMJM01000001
Alphaproteobacteria
Ensifer sp. Root954 [LMJM]
541394
541298
-
SeC(p)
TCA
[ENA]
¡û
>W1710021221
AUTB01000103
Alphaproteobacteria
Sinorhizobium sp. GL2 [AUTB]
57122
57026
-
SeC(p)
TCA
[ENA]
¡û
>W1710521816
FNGR01000010
Alphaproteobacteria
Ensifer sp. YR511 [FNGR]
166647
166743
+
SeC(p)
TCA
[ENA]
¡û
>W1710561950
FOON01000003
Alphaproteobacteria
Ensifer sp. OV372 [FOON]
567658
567562
-
SeC(p)
TCA
[ENA]
¡û
>W1710698075
LAZS01000008
Alphaproteobacteria
Ensifer adhaerens [LAZS]
523388
523292
-
SeC(p)
TCA
[ENA]
¡û
Identical group No.6160 (3 seq.)
>PL191001286
CP034811
Alphaproteobacteria
Paracoccus sp. Arc7-R13 plasmid:unnamed1 (CP034811)
98028
98124
+
Sec
TCA
[ENA]
¡û
>W1511518703
JXYF01000035
Alphaproteobacteria
Paracoccus sp. S4493 [JXYF]
23690
23594
-
SeC
TCA
[ENA]
¡û
>W1511526796
JYGY01000002
Alphaproteobacteria
Paracoccus sp. 228 361 [JYGY]
111776
111680
-
SeC
TCA
[ENA]
¡û
Identical group No.15782 (1 seq.)
>PL191000803
CP030127
Alphaproteobacteria
Indioceanicola profundi SCSIO 08040 plasmid:unnamed1 (CP030127)
318269
318361
+
Sec
TCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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