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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Aquificota
Anticodon = CGA
HIT:
11 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.5663 (1 seq.)
>C11122339
CP002444
Aquificota
Thermovibrio ammonificans HB-1 [CP002444]
1636959
1637054
+
Ser
CGA
[Ensembl]
¡û
Identical group No.7204 (1 seq.)
>C11107402
CP002543
Aquificota
Desulfurobacterium thermolithotrophum DSM 11699 [CP002543]
1468420
1468514
+
Ser
CGA
[Ensembl]
¡û
Identical group No.9861 (1 seq.)
>W08004329
ABHJ01000003
Aquificota
Hydrogenivirga sp. 128-5-R1-1 [ABHJ]
67550
67460
-
Ser
CGA
[ENA]
¡û
Identical group No.17516 (1 seq.)
>C161000112
AP013035
Aquificota
Thermosulfidibacter takaii ABI70S6 [AP013035]
36617
36525
-
Ser
CGA
[Ensembl]
¡û
Identical group No.18296 (1 seq.)
>C10113051
CP001931
Aquificota
Thermocrinis albus DSM 14484 [CP001931]
696706
696617
-
Ser
CGA
[Ensembl]
¡û
Identical group No.19679 (1 seq.)
>C000009
AE000657
Aquificota
Aquifex aeolicus VF5 [AE000657]
972005
972094
+
Ser
CGA
[Ensembl]
¡û
Identical group No.30947 (9 seq.)
>WENV181228622
OFEH01000507
[OFEH] hypersaline lake metagenome; Grendel Spring, Yellowstone National Park, Wyoming, USA
2795
2708
-
Ser
CGA
[ENA]
¢þ
>C08005583
CP001130
Aquificota
Hydrogenobaculum sp. Y04AAS1 [CP001130]
1187014
1187101
+
Ser
CGA
[Ensembl]
¡û
>W09107154
ABFI01000050
Aquificota
Hydrogenobaculum sp. Y04AAS1 [ABFI]
84
171
+
Ser
CGA
[ENA]
¡û
>C151003654
CP002726
Aquificota
Hydrogenobaculum sp. 3684 [CP002726]
1183241
1183328
+
Ser
CGA
[Ensembl]
¡û
>C151003698
CP002809
Aquificota
Hydrogenobaculum sp. SHO [CP002809]
1183353
1183440
+
Ser
CGA
[Ensembl]
¡û
>W10115180
ADJO01000001
Aquificota
Hydrogenobaculum sp. SN [ADJO]
40330
40243
-
Ser
CGA
[ENA]
¡û
>W11118766
ADJO01000001
Aquificota
Hydrogenobaculum sp. SN [ADJO]
40330
40243
-
Ser
CGA
[ENA]
¡û
>C131013394
CP004347
Aquificota
Hydrogenobaculum sp. HO [CP004347]
1183430
1183517
+
Ser
CGA
[Ensembl]
¡û
>C131013705
CP004390
Aquificota
Hydrogenobaculum sp. SN [CP004390]
1183397
1183484
+
Ser
CGA
[Ensembl]
¡û
Identical group No.34806 (2 seq.)
>C10107865
AP011112
Aquificota
Hydrogenobacter thermophilus TK-6 [AP011112]
1555943
1556030
+
Ser
CGA
-
¡û
>C11111338
CP002221
Aquificota
Hydrogenobacter thermophilus TK-6 [CP002221]
1555801
1555888
+
Ser
CGA
-
¡û
Identical group No.39151 (1 seq.)
>W141730226
JNIE01000006
Aquificota
Thermocrinis jamiesonii GBS [JNIE]
66017
65930
-
Ser
CGA
[ENA]
¡û
Identical group No.42595 (3 seq.)
>WENV181223030
OFDC01001295
[OFDC] hot springs metagenome; Water
6206
6293
+
Ser
CGA
[ENA]
¢þ
>WENV170574505
FLYM01050011
[FLYM] hot springs metagenome; Sediment
3218
3305
+
Ser
CGA
[ENA]
¢þ
>W1911493350
OBEN01000002
Aquificota
Hydrogenobacter hydrogenophilus DSM 2913 [OBEN]
100802
100889
+
Ser
CGA
[ENA]
¡û
Identical group No.45303 (1 seq.)
>C141011692
CP007028
Aquificota
Thermocrinis ruber DSM 23557 [CP007028]
1474019
1473932
-
Ser
CGA
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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