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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Aquificota
Anticodon = TCA
HIT:
12 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.81 (2 seq.)
>C10107854
AP011112
Aquificota
Hydrogenobacter thermophilus TK-6 [AP011112]
858611
858710
+
SeC
TCA
-
¡û
>C11111327
CP002221
Aquificota
Hydrogenobacter thermophilus TK-6 [CP002221]
858603
858702
+
SeC
TCA
-
¡û
Identical group No.133 (1 seq.)
>W1911493358
OBEN01000003
Aquificota
Hydrogenobacter hydrogenophilus DSM 2913 [OBEN]
36823
36724
-
Sec
TCA
[ENA]
¡û
Identical group No.290 (3 seq.)
>WENV181405180
OGCB01022674
[OGCB] hot springs metagenome; Octopus Spring Streamers, Yellowstone National Park, Wyoming, USA
471
567
+
SeC
TCA
[ENA]
¢þ
>WENV181405983
OGCE01017638
[OGCE] hot springs metagenome; Octopus Spring, Yellowstone National Park, Wyoming, USA
735
639
-
SeC
TCA
[ENA]
¢þ
>C141011709
CP007028
Aquificota
Thermocrinis ruber DSM 23557 [CP007028]
474255
474159
-
SeC
TCA
-
¡û
Identical group No.305 (1 seq.)
>W08004334
ABHJ01000006
Aquificota
Hydrogenivirga sp. 128-5-R1-1 [ABHJ]
38154
38252
+
SeC
TCA
[ENA]
¡û
Identical group No.486 (1 seq.)
>C10113028
CP001931
Aquificota
Thermocrinis albus DSM 14484 [CP001931]
907625
907720
+
SeC
TCA
[Ensembl]
¡û
Identical group No.578 (1 seq.)
>C000007
AE000657
Aquificota
Aquifex aeolicus VF5 [AE000657]
727371
727465
+
SeC
TCA
[Ensembl]
¡û
Identical group No.1354 (1 seq.)
>C161000085
AP013035
Aquificota
Thermosulfidibacter takaii ABI70S6 [AP013035]
1615412
1615315
-
SeC(p)
TCA
[Ensembl]
¡û
Identical group No.6121 (1 seq.)
>W1711589788
MOEN01000016
Aquificota
Desulfurobacterium indicum K6013 [MOEN]
8357
8263
-
SeC(p)
TCA
[ENA]
¡û
Identical group No.6991 (1 seq.)
>W1910547776
FZOB01000003
Aquificota
Desulfurobacterium atlanticum DSM 15668 [FZOB]
144142
144048
-
Sec
TCA
[ENA]
¡û
Identical group No.7196 (1 seq.)
>C11107383
CP002543
Aquificota
Desulfurobacterium thermolithotrophum DSM 11699 [CP002543]
490749
490843
+
SeC
TCA
[Ensembl]
¡û
Identical group No.7503 (1 seq.)
>W131217743
ATXC01000001
Aquificota
Desulfurobacterium sp. TC5-1 [ATXC]
1066406
1066500
+
SeC(p)
TCA
[ENA]
¡û
Identical group No.8151 (1 seq.)
>C11122347
CP002444
Aquificota
Thermovibrio ammonificans HB-1 [CP002444]
1406531
1406437
-
SeC
TCA
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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