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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Elusimicrobiota
Anticodon = CAG
HIT:
29 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.90254 (3 seq.)
>W1910727594
MGUN01000025
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_39_36 [MGUN]
19052
19136
+
Leu
CAG
[ENA]
¡û
>W1910727833
MGUU01000013
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_02_FULL_39_32 [MGUU]
19090
19174
+
Leu
CAG
[ENA]
¡û
>W1910727907
MGUW01000022
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_12_FULL_39_28 [MGUW]
19093
19177
+
Leu
CAG
[ENA]
¡û
Identical group No.113404 (3 seq.)
>W1711412157
MGTX01000006
Elusimicrobiota
Elusimicrobia bacterium GWA2_66_18 [MGTX]
109688
109774
+
Leu
CAG
[ENA]
¡û
>W1711412648
MGUL01000035
Elusimicrobiota
Elusimicrobia bacterium RBG_16_66_12 [MGUL]
1725
1639
-
Leu
CAG
[ENA]
¡û
>W1711413335
MGVR01000065
Elusimicrobiota
Elusimicrobia bacterium RIFOXYD12_FULL_66_9 [MGVR]
3018
2932
-
Leu
CAG
[ENA]
¡û
Identical group No.113432 (12 seq.)
>W1711412058
MGTU01000030
Elusimicrobiota
Elusimicrobia bacterium GWA2_61_42 [MGTU]
38147
38062
-
Leu
CAG
[ENA]
¡û
>W1711412065
MGTV01000008
Elusimicrobiota
Elusimicrobia bacterium GWA2_62_23 [MGTV]
1216
1301
+
Leu
CAG
[ENA]
¡û
>W1711412110
MGTW01000028
Elusimicrobiota
Elusimicrobia bacterium GWA2_64_40 [MGTW]
36948
37031
+
Leu
CAG
[ENA]
¡û
>W1711412233
MGTZ01000030
Elusimicrobiota
Elusimicrobia bacterium GWB2_63_16 [MGTZ]
36632
36715
+
Leu
CAG
[ENA]
¡û
>W1711412276
MGUA01000023
Elusimicrobiota
Elusimicrobia bacterium GWB2_63_22 [MGUA]
44522
44437
-
Leu
CAG
[ENA]
¡û
>W1711412371
MGUD01000001
Elusimicrobiota
Elusimicrobia bacterium GWC2_61_19 [MGUD]
10624
10539
-
Leu
CAG
[ENA]
¡û
>W1711412419
MGUE01000046
Elusimicrobiota
Elusimicrobia bacterium GWC2_61_25 [MGUE]
40594
40679
+
Leu
CAG
[ENA]
¡û
>W1711412458
MGUG01000009
Elusimicrobiota
Elusimicrobia bacterium GWC2_64_44 [MGUG]
5805
5888
+
Leu
CAG
[ENA]
¡û
>W1711412548
MGUI01000035
Elusimicrobiota
Elusimicrobia bacterium GWD2_63_28 [MGUI]
55754
55671
-
Leu
CAG
[ENA]
¡û
>W1711412610
MGUK01000012
Elusimicrobiota
Elusimicrobia bacterium GWF2_62_30 [MGUK]
1442
1357
-
Leu
CAG
[ENA]
¡û
>WENV183673148
ORJL011247701
[ORJL] groundwater metagenome; groundwater
339
254
-
Leu
CAG
[ENA]
¢þ
>WENV183673149
ORJL011247788
[ORJL] groundwater metagenome; groundwater
336
251
-
Leu
CAG
[ENA]
¢þ
Identical group No.113436 (2 seq.)
>W1711412213
MGTY01000116
Elusimicrobiota
Elusimicrobia bacterium GWA2_69_24 [MGTY]
2808
2721
-
Leu
CAG
[ENA]
¡û
>W1711412510
MGUH01000077
Elusimicrobiota
Elusimicrobia bacterium GWC2_65_9 [MGUH]
634
547
-
Leu
CAG
[ENA]
¡û
Identical group No.113439 (4 seq.)
>W1711411981
MGTT01000006
Elusimicrobiota
Elusimicrobia bacterium GWA2_56_46 [MGTT]
29279
29366
+
Leu
CAG
[ENA]
¡û
>W1711412332
MGUC01000008
Elusimicrobiota
Elusimicrobia bacterium GWC2_56_31 [MGUC]
29272
29359
+
Leu
CAG
[ENA]
¡û
>W1711412772
MGVA01000033
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_51_18 [MGVA]
44155
44240
+
Leu
CAG
[ENA]
¡û
>W1711412984
MGVG01000026
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_53_38 [MGVG]
38023
38108
+
Leu
CAG
[ENA]
¡û
Identical group No.113443 (2 seq.)
>W1711413317
MGVQ01000071
Elusimicrobiota
Elusimicrobia bacterium RIFOXYC2_FULL_34_12 [MGVQ]
5544
5459
-
Leu
CAG
[ENA]
¡û
>W1711413412
MGVT01000085
Elusimicrobiota
Elusimicrobia bacterium RIFOXYD2_FULL_34_30 [MGVT]
640
725
+
Leu
CAG
[ENA]
¡û
Identical group No.114611 (3 seq.)
>C08011146
AP009510
Elusimicrobiota
Candidatus Endomicrobium trichonymphae Rs-D17 genomovar Ri2008 [AP009510]
306776
306693
-
Leu
CAG
-
¡û
>C181002103
AP017459
Elusimicrobiota
Candidatus Endomicrobium trichonymphae Rs-D17 [AP017459]
302826
302743
-
Leu
CAG
-
¡û
>ENV000851
AP009510
Environmental sample from ENV division of INSDC
306776
306690
-
Leu
CAG
[ENA]
Identical group No.114615 (2 seq.)
>C08004655
CP001055
Elusimicrobiota
Elusimicrobium minutum Pei191 [CP001055]
812393
812476
+
Leu
CAG
[Ensembl]
¡û
>W09107490
ABIQ01000005
Elusimicrobiota
Elusimicrobium minutum Pei191 [ABIQ]
28565
28482
-
Leu
CAG
[ENA]
¡û
Identical group No.118855 (3 seq.)
>W1711411974
MGTS01000039
Elusimicrobiota
Elusimicrobia bacterium GWA2_51_34 [MGTS]
48850
48935
+
Leu
CAG
[ENA]
¡û
>W1711412316
MGUB01000094
Elusimicrobiota
Elusimicrobia bacterium GWC2_51_8 [MGUB]
5093
5178
+
Leu
CAG
[ENA]
¡û
>W1711412588
MGUJ01000093
Elusimicrobiota
Elusimicrobia bacterium GWF2_52_66 [MGUJ]
33634
33719
+
Leu
CAG
[ENA]
¡û
Identical group No.121789 (9 seq.)
>W1712038732
NFJD01000003
Elusimicrobiota
Elusimicrobium sp. An273 [NFJD]
168769
168684
-
Leu
CAG
[ENA]
¡û
>WENV181691445
OGOZ01007368
[OGOZ] human gut metagenome; faeces
1043
958
-
Leu
CAG
[ENA]
¢þ
>WENV182658873
OJML01001344
[OJML] human gut metagenome; feces
10487
10402
-
Leu
CAG
[ENA]
¢þ
>WENV183070683
OLIS01000252
[OLIS] human gut metagenome; feces
31250
31335
+
Leu
CAG
[ENA]
¢þ
>WENV183640768
OQVL01010224
[OQVL] human gut metagenome; human gut
4864
4779
-
Leu
CAG
[ENA]
¢þ
>WENV183643597
OQVO01036507
[OQVO] human gut metagenome; human gut
14
99
+
Leu
CAG
[ENA]
¢þ
>WENV183646027
OQVQ01065219
[OQVQ] human gut metagenome; human gut
109
24
-
Leu
CAG
[ENA]
¢þ
>WENV183651162
OQVT01085396
[OQVT] human gut metagenome; human gut
554
639
+
Leu
CAG
[ENA]
¢þ
>WENV183657220
OQWI01004798
[OQWI] human gut metagenome; human gut
607
692
+
Leu
CAG
[ENA]
¢þ
Identical group No.123428 (3 seq.)
>W1711412816
MGVB01000093
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_57_11 [MGVB]
6750
6665
-
Leu
CAG
[ENA]
¡û
>W1711413024
MGVH01000045
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_58_8 [MGVH]
25102
25187
+
Leu
CAG
[ENA]
¡û
>W1711581891
MNUR01000067
Elusimicrobiota
Elusimicrobia bacterium CG1_02_56_21 [MNUR]
6479
6394
-
Leu
CAG
[ENA]
¡û
Identical group No.129773 (6 seq.)
>W1711412705
MGUY01000093
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA1_FULL_47_7 [MGUY]
5438
5353
-
Leu
CAG
[ENA]
¡û
>W1711412744
MGUZ01000015
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA12_FULL_49_49 [MGUZ]
107266
107181
-
Leu
CAG
[ENA]
¡û
>W1711412903
MGVE01000003
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_47_53 [MGVE]
56333
56418
+
Leu
CAG
[ENA]
¡û
>W1711413066
MGVJ01000029
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB1_FULL_48_9 [MGVJ]
12887
12802
-
Leu
CAG
[ENA]
¡û
>W1711413121
MGVK01000030
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB12_FULL_50_12 [MGVK]
39297
39382
+
Leu
CAG
[ENA]
¡û
>W1711413128
MGVL01000004
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_46_23 [MGVL]
56325
56410
+
Leu
CAG
[ENA]
¡û
Identical group No.132013 (1 seq.)
>W1910727921
MGUX01000053
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_12_FULL_59_9 [MGUX]
2378
2293
-
Leu
CAG
[ENA]
¡û
Identical group No.132483 (1 seq.)
>W1711413214
MGVN01000105
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_49_7 [MGVN]
2309
2392
+
Leu
CAG
[ENA]
¡û
Identical group No.132485 (1 seq.)
>W1711413221
MGVN01000144
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_49_7 [MGVN]
3513
3430
-
Leu
CAG
[ENA]
¡û
Identical group No.132573 (2 seq.)
>W1710917278
LNVX01000291
Elusimicrobiota
Candidatus Endomicrobium trichonymphae [LNVX]
94579
94662
+
Leu
CAG
[ENA]
¡û
>WENV170715714
LQAB01012216
[LQAB] termite gut metagenome; bacterial endosymbionts found in Trichonympha flagellates filtered from termite gut
43646
43729
+
Leu
CAG
[ENA]
¢þ
Identical group No.137200 (2 seq.)
>W1711412949
MGVF01000026
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_50_26 [MGVF]
85
-1
-
Leu
CAG
[ENA]
¡û
>W1711413260
MGVO01000077
Elusimicrobiota
Elusimicrobia bacterium RIFOXYB2_FULL_50_12 [MGVO]
11193
11108
-
Leu
CAG
[ENA]
¡û
Identical group No.138660 (2 seq.)
>W1910727541
MGUM01000062
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_01_FULL_64_10 [MGUM]
11971
11888
-
Leu
CAG
[ENA]
¡û
>W1910727804
MGUT01000074
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_64_13 [MGUT]
1336
1253
-
Leu
CAG
[ENA]
¡û
Identical group No.145223 (1 seq.)
>W1711581941
MNUS01000145
Elusimicrobiota
Elusimicrobia bacterium CG1_02_63_36 [MNUS]
5334
5248
-
Leu
CAG
[ENA]
¡û
Identical group No.146841 (1 seq.)
>W1711413366
MGVS01000021
Elusimicrobiota
Elusimicrobia bacterium RIFOXYD2_FULL_34_15 [MGVS]
41412
41327
-
Leu
CAG
[ENA]
¡û
Identical group No.148364 (1 seq.)
>W1711583347
MNXB01000084
Elusimicrobiota
Elusimicrobia bacterium CG1_02_37_114 [MNXB]
17295
17378
+
Leu
CAG
[ENA]
¡û
Identical group No.153592 (1 seq.)
>W1910727609
MGUO01000092
Elusimicrobiota
Elusimicrobia bacterium RIFCSPHIGHO2_02_FULL_57_9 [MGUO]
709
623
-
Leu
CAG
[ENA]
¡û
Identical group No.154401 (1 seq.)
>W1711412837
MGVC01000014
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_39_19 [MGVC]
51096
51180
+
Leu
CAG
[ENA]
¡û
Identical group No.166249 (1 seq.)
>W1711412883
MGVD01000068
Elusimicrobiota
Elusimicrobia bacterium RIFOXYA2_FULL_40_6 [MGVD]
14119
14035
-
Leu
CAG
[ENA]
¡û
Identical group No.171656 (1 seq.)
>W1910727690
MGUQ01000052
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_54_10 [MGUQ]
18290
18372
+
Leu
CAG
[ENA]
¡û
Identical group No.178110 (1 seq.)
>W1910727752
MGUS01000022
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_60_11 [MGUS]
4372
4290
-
Leu
CAG
[ENA]
¡û
Identical group No.210122 (1 seq.)
>C151053015
CP009498
Elusimicrobiota
Endomicrobium proavitum Rsa215 [CP009498]
1061723
1061806
+
Leu
CAG
[Ensembl]
¡û
Identical group No.210232 (1 seq.)
>W1730031824
MNUS01000015
Elusimicrobiota
Elusimicrobia bacterium CG1_02_63_36 [MNUS]
6103
6187
+
Leu
CAG
[ENA]
¡û
Identical group No.226285 (1 seq.)
>W1910727717
MGUR01000009
Elusimicrobiota
Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_59_12 [MGUR]
45317
45237
-
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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