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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Nitrososphaerota
Anticodon = GGA
HIT:
9 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.74853 (2 seq.)
>A178000653
CP012850
Nitrososphaerota
Candidatus Nitrosocosmicus oleophilus MY3 [CP012850]
1841853
1841751
-
Ser
GGA
-
¡û
>A178000691
CP017922
Nitrososphaerota
Candidatus Nitrosocosmicus hydrocola G61 [CP017922]
2123315
2123415
+
Ser
GGA
-
¡û
Identical group No.82068 (2 seq.)
>A178000424
CP007174
Nitrososphaerota
Candidatus Nitrososphaera evergladensis SR1 [CP007174]
2311225
2311122
-
Ser
GGA
-
¡û
>A178000438
CP007536
Nitrososphaerota
Nitrososphaera viennensis EN76 [CP007536]
1176326
1176224
-
Ser
GGA
-
¡û
Identical group No.84038 (1 seq.)
>A178000180
CP002408
Nitrososphaerota
Candidatus Nitrososphaera gargensis Ga9.2 [CP002408]
163468
163569
+
Ser
GGA
-
¡û
Identical group No.126983 (10 seq.)
>A17A000048
CP000866
Nitrososphaerota
Nitrosopumilus maritimus SCM1 [CP000866]
366393
366493
+
Ser
GGA
-
¡û
>A17A000955
CP003842
Nitrososphaerota
Candidatus Nitrosopumilus koreensis AR1 [CP003842]
352956
353056
+
Ser
GGA
-
¡û
>A17A000960
CP003843
Nitrososphaerota
Candidatus Nitrosopumilus sediminis AR2 [CP003843]
339387
339488
+
Ser
GGA
-
¡û
>A17A001326
CP010868
Nitrososphaerota
Nitrosopumilus piranensis D3C [CP010868]
1539860
1539760
-
Ser
GGA
-
¡û
>A17A001354
CP011070
Nitrososphaerota
Nitrosopumilus adriaticus NF5 [CP011070]
1419888
1419787
-
Ser
GGA
-
¡û
>A179000016
CP000866
Nitrososphaerota
Nitrosopumilus maritimus SCM1 [CP000866]
366393
366493
+
Ser
GGA
-
¡û
>A179000399
CP003842
Nitrososphaerota
Candidatus Nitrosopumilus koreensis AR1 [CP003842]
352956
353056
+
Ser
GGA
-
¡û
>A179000405
CP003843
Nitrososphaerota
Candidatus Nitrosopumilus sediminis AR2 [CP003843]
339387
339488
+
Ser
GGA
-
¡û
>A179000564
CP010868
Nitrososphaerota
Nitrosopumilus piranensis D3C [CP010868]
1539860
1539760
-
Ser
GGA
-
¡û
>A179000587
CP011070
Nitrososphaerota
Nitrosopumilus adriaticus NF5 [CP011070]
1419888
1419787
-
Ser
GGA
-
¡û
Identical group No.141029 (3 seq.)
>A17A001360
CP011097
Nitrososphaerota
Candidatus Nitrosotenuis cloacae SAT1 [CP011097]
1228680
1228578
-
Ser
GGA
-
¡û
>A178000737
LN890280
Nitrososphaerota
Candidatus Nitrosotalea devanaterra [LN890280]
332876
332976
+
Ser
GGA
-
¡û
>A179000592
CP011097
Nitrososphaerota
Candidatus Nitrosotenuis cloacae SAT1 [CP011097]
1228680
1228580
-
Ser
GGA
-
¡û
Identical group No.145121 (2 seq.)
>A17A001119
CP007026
Nitrososphaerota
Candidatus Nitrosopelagicus brevis CN25 [CP007026]
911048
910948
-
Ser
GGA
-
¡û
>A179000466
CP007026
Nitrososphaerota
Candidatus Nitrosopelagicus brevis CN25 [CP007026]
911048
910948
-
Ser
GGA
-
¡û
Identical group No.148262 (2 seq.)
>A17A001686
CP021324
Nitrososphaerota
Candidatus Nitrosomarinus catalina SPOT01 [CP021324]
1037678
1037577
-
Ser
GGA
-
¡û
>A179000694
CP021324
Nitrososphaerota
Candidatus Nitrosomarinus catalina SPOT01 [CP021324]
1037678
1037577
-
Ser
GGA
-
¡û
Identical group No.151415 (1 seq.)
>At0079
DP000238
Nitrososphaerota
Cenarchaeum symbiosum [DP000238]
271171
271071
-
Ser
GGA
[Ensembl]
¡û
Identical group No.399303 (1 seq.)
>A17A001471
CP012850
Nitrososphaerota
Candidatus Nitrosocosmicus oleophilus MY3 [CP012850]
1721449
1721344
-
Ser
GGA
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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