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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
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Keyword
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BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Synergistota
Anticodon = GCT
HIT:
19 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.3515 (10 seq.)
>C171050568
CP016757
Synergistota
Cloacibacillus porcorum CL-84 [CP016757]
1415792
1415697
-
Ser
GCT
-
¡û
>WENV181908563
OGYB01000107
[OGYB] human gut metagenome; faeces
41952
42047
+
Ser
GCT
[ENA]
¢þ
>WENV181914618
OGYF01000561
[OGYF] human gut metagenome; faeces
7978
7883
-
Ser
GCT
[ENA]
¢þ
>WENV182031388
OHCS01014556
[OHCS] human gut metagenome; feces
875
780
-
Ser
GCT
[ENA]
¢þ
>WENV182180483
OHNO01001362
[OHNO] human gut metagenome; feces
6892
6987
+
Ser
GCT
[ENA]
¢þ
>WENV182216007
OHQM01011231
[OHQM] human gut metagenome; feces
1259
1354
+
Ser
GCT
[ENA]
¢þ
>WENV182221014
OHQS01030161
[OHQS] human gut metagenome; feces
206
111
-
Ser
GCT
[ENA]
¢þ
>WENV182538178
OIXH01048063
[OIXH] human gut metagenome; faeces
423
518
+
Ser
GCT
[ENA]
¢þ
>W141452052
JFBR01000002
Synergistota
Cloacibacillus evryensis DSM 19522 [JFBR]
30263
30168
-
Ser
GCT
[ENA]
¡û
>W121000463
ACUH01000019
Synergistota
Synergistes sp. 3_1_syn1 [ACUH]
7397
7492
+
Ser
GCT
[ENA]
¡û
Identical group No.3705 (1 seq.)
>W1712039393
NFJQ01000015
Synergistota
Cloacibacillus sp. An23 [NFJQ]
7102
7007
-
Ser
GCT
[ENA]
¡û
Identical group No.4755 (2 seq.)
>W1711137609
LVBQ01000023
Synergistota
Synergistales bacterium Syner_03 [LVBQ]
21074
21169
+
Ser
GCT
[ENA]
¡û
>W1610948729
LVBQ01000023
Synergistota
Synergistales bacterium Syner_03 [LVBQ]
21074
21169
+
Ser
GCT
[ENA]
¡û
Identical group No.5862 (4 seq.)
>WENV170676940
LDZS01003283
[LDZS] terrestrial metagenome; oil reservoir sample K3
3910
4004
+
Ser
GCT
[ENA]
¢þ
>WENV170970631
MTKW01080942
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1129
1223
+
Ser
GCT
[ENA]
¢þ
>W1610613308
LGFQ01000103
Synergistota
Synergistales bacterium 54_24 [LGFQ]
3910
4004
+
Ser
GCT
[ENA]
¡û
>W1710734515
LGFQ01000103
Synergistota
Synergistales bacterium 54_24 [LGFQ]
3910
4004
+
Ser
GCT
[ENA]
¡û
Identical group No.6756 (2 seq.)
>W11138630
AEIV01000002
Synergistota
Aminomonas paucivorans DSM 12260 [AEIV]
243305
243211
-
Ser
GCT
[ENA]
¡û
>W121031646
AHGV01000001
Synergistota
Thermanaerovibrio velox DSM 12556 [AHGV]
1009209
1009115
-
Ser
GCT
[ENA]
¡û
Identical group No.7798 (3 seq.)
>WENV181409294
OGCI01000070
[OGCI] hot springs metagenome; Hot spring water
28551
28457
-
Ser
GCT
[ENA]
¢þ
>W09110149
ABUW01000006
Synergistota
Thermanaerovibrio acidaminovorans DSM 6589 [ABUW]
18618
18712
+
Ser
GCT
[ENA]
¡û
>C10113009
CP001818
Synergistota
Thermanaerovibrio acidaminovorans DSM 6589 [CP001818]
1134877
1134783
-
Ser
GCT
[Ensembl]
¡û
Identical group No.7933 (1 seq.)
>W141278968
JAFY01000007
Synergistota
Aminiphilus circumscriptus DSM 16581 [JAFY]
697051
697145
+
Ser
GCT
[ENA]
¡û
Identical group No.8788 (2 seq.)
>C121008073
CP003198
Synergistota
Acetomicrobium mobile DSM 13181 [CP003198]
1430700
1430607
-
Ser
GCT
[Ensembl]
¡û
>W1710594067
FSQZ01000001
Synergistota
Acetomicrobium flavidum [FSQZ]
1730724
1730817
+
Ser
GCT
[ENA]
¡û
Identical group No.8989 (19 seq.)
>WENV180009932
FLSC01177745
[FLSC] metagenome; saliva
165
72
-
Ser
GCT
[ENA]
¢þ
>WENV180728346
ODGU01040583
[ODGU] human metagenome; G_DNA_Supragingival plaque
174
267
+
Ser
GCT
[ENA]
¢þ
>WENV180731686
ODGW01006736
[ODGW] human metagenome; G_DNA_Supragingival plaque
1534
1627
+
Ser
GCT
[ENA]
¢þ
>WENV180734685
ODGZ01017820
[ODGZ] human metagenome; G_DNA_Supragingival plaque
470
377
-
Ser
GCT
[ENA]
¢þ
>WENV180751492
ODHS01058578
[ODHS] human metagenome; G_DNA_Supragingival plaque
284
191
-
Ser
GCT
[ENA]
¢þ
>WENV180798152
ODJB01297514
[ODJB] human metagenome; G_DNA_Supragingival plaque
230
137
-
Ser
GCT
[ENA]
¢þ
>WENV180809638
ODJK01030964
[ODJK] human metagenome; G_DNA_Subgingival plaque
565
472
-
Ser
GCT
[ENA]
¢þ
>WENV180943692
ODUC01001687
[ODUC] human metagenome; G_DNA_Supragingival plaque
5995
5902
-
Ser
GCT
[ENA]
¢þ
>WENV180951929
ODUH01077894
[ODUH] human metagenome; G_DNA_Subgingival plaque
233
326
+
Ser
GCT
[ENA]
¢þ
>WENV180976642
ODUY01185176
[ODUY] human metagenome; G_DNA_Supragingival plaque
110
203
+
Ser
GCT
[ENA]
¢þ
>WENV180981871
ODVE01078069
[ODVE] human metagenome; G_DNA_Supragingival plaque
442
349
-
Ser
GCT
[ENA]
¢þ
>WENV181050539
ODYD01024852
[ODYD] human metagenome; G_DNA_Supragingival plaque
1199
1292
+
Ser
GCT
[ENA]
¢þ
>WENV181077338
OEAP01043378
[OEAP] human metagenome; G_DNA_Supragingival plaque
607
700
+
Ser
GCT
[ENA]
¢þ
>WENV181080770
OEAS01079885
[OEAS] human metagenome; G_DNA_Supragingival plaque
294
387
+
Ser
GCT
[ENA]
¢þ
>WENV181091625
OEBC01060686
[OEBC] human metagenome; G_DNA_Supragingival plaque
291
198
-
Ser
GCT
[ENA]
¢þ
>WENV181182565
OEJV01017241
[OEJV] human metagenome; G_DNA_Supragingival plaque
734
827
+
Ser
GCT
[ENA]
¢þ
>WENV183507950
OMGZ01001857
[OMGZ] human oral metagenome; human oral
448
355
-
Ser
GCT
[ENA]
¢þ
>WENV183509788
OMHJ01013764
[OMHJ] human oral metagenome; human oral
148
241
+
Ser
GCT
[ENA]
¢þ
>C161104031
FP929056
Synergistota
Fretibacterium fastidiosum SGP1 [FP929056]
2471908
2471815
-
Ser
GCT
-
¡û
Identical group No.9100 (8 seq.)
>WENV181230473
OFEK01001116
[OFEK] activated sludge metagenome; Anaerobic digester
13955
14048
+
Ser
GCT
[ENA]
¢þ
>WENV183514095
OMKS01011869
[OMKS] sediment metagenome; hot spring sediment
567
660
+
Ser
GCT
[ENA]
¢þ
>WENV170678364
LDZT01014057
[LDZT] terrestrial metagenome; oil reservoir sample SB1
5174
5267
+
Ser
GCT
[ENA]
¢þ
>WENV170678623
LDZU01003411
[LDZU] terrestrial metagenome; oil reservoir sample SB2
2577
2484
-
Ser
GCT
[ENA]
¢þ
>W1610613716
LGGE01000050
Synergistota
Synergistales bacterium 57_84 [LGGE]
5174
5267
+
Ser
GCT
[ENA]
¡û
>W1610614161
LGGV01000036
Synergistota
Synergistales bacterium 58_81 [LGGV]
2577
2484
-
Ser
GCT
[ENA]
¡û
>W1710734869
LGGE01000050
Synergistota
Synergistales bacterium 57_84 [LGGE]
5174
5267
+
Ser
GCT
[ENA]
¡û
>W1710735244
LGGV01000036
Synergistota
Synergistales bacterium 58_81 [LGGV]
2577
2484
-
Ser
GCT
[ENA]
¡û
Identical group No.9159 (3 seq.)
>WENV170563848
CZCB01032031
[CZCB] anaerobic digester metagenome; anaerobic digester
2144
2051
-
Ser
GCT
[ENA]
¢þ
>W09126636
ACJX01000213
Synergistota
Acetomicrobium hydrogeniformans ATCC BAA-1850 [ACJX]
105269
105176
-
Ser
GCT
[ENA]
¡û
>W1710530821
FNPD01000002
Synergistota
Acetomicrobium thermoterrenum DSM 13490 [FNPD]
108333
108240
-
Ser
GCT
[ENA]
¡û
Identical group No.9185 (4 seq.)
>WENV170676986
LDZS01003930
[LDZS] terrestrial metagenome; oil reservoir sample K3
3535
3628
+
Ser
GCT
[ENA]
¢þ
>C121005698
CP003096
Synergistota
Thermovirga lienii DSM 17291 [CP003096]
1252823
1252730
-
Ser
GCT
[Ensembl]
¡û
>W1610613348
LGFS01000092
Synergistota
Thermovirga lienii [LGFS]
3535
3628
+
Ser
GCT
[ENA]
¡û
>W1710734555
LGFS01000092
Synergistota
Thermovirga lienii [LGFS]
3535
3628
+
Ser
GCT
[ENA]
¡û
Identical group No.9191 (6 seq.)
>WENV170677147
LDZT01003252
[LDZT] terrestrial metagenome; oil reservoir sample SB1
16331
16238
-
Ser
GCT
[ENA]
¢þ
>WENV170679057
LDZU01006831
[LDZU] terrestrial metagenome; oil reservoir sample SB2
5015
4922
-
Ser
GCT
[ENA]
¢þ
>W1610613608
LGGB01000004
Synergistota
Synergistales bacterium 53_16 [LGGB]
16331
16238
-
Ser
GCT
[ENA]
¡û
>W1610614504
LGHG01000082
Synergistota
Synergistales bacterium 54_9 [LGHG]
5015
4922
-
Ser
GCT
[ENA]
¡û
>W1710734780
LGGB01000004
Synergistota
Synergistales bacterium 53_16 [LGGB]
16331
16238
-
Ser
GCT
[ENA]
¡û
>W1710735485
LGHG01000082
Synergistota
Synergistales bacterium 54_9 [LGHG]
5015
4922
-
Ser
GCT
[ENA]
¡û
Identical group No.50755 (4 seq.)
>W1711629569
MPPC01000024
Synergistota
Aminobacterium sp. EBM-42 [MPPC]
149485
149574
+
Ser
GCT
[ENA]
¡û
>WENV170689887
LFRM01316303
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
450
361
-
Ser
GCT
[ENA]
¢þ
>WENV170719188
LSQX01104951
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
42530
42619
+
Ser
GCT
[ENA]
¢þ
>C10100322
CP001997
Synergistota
Aminobacterium colombiense DSM 12261 [CP001997]
1280435
1280346
-
Ser
GCT
[Ensembl]
¡û
Identical group No.57155 (5 seq.)
>W1711744521
MUHX01000056
Synergistota
Pyramidobacter sp. C12-8 [MUHX]
1237
1148
-
Ser
GCT
[ENA]
¡û
>WENV181989278
OHAO01005548
[OHAO] human gut metagenome; faeces
402
313
-
Ser
GCT
[ENA]
¢þ
>WENV183764126
PPYE01315554
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
1719
1630
-
Ser
GCT
[ENA]
¢þ
>W10113022
ADFP01000051
Synergistota
Pyramidobacter piscolens W5455 [ADFP]
5438
5349
-
Ser
GCT
[ENA]
¡û
>W11116249
ADFP01000051
Synergistota
Pyramidobacter piscolens W5455 [ADFP]
5438
5349
-
Ser
GCT
[ENA]
¡û
Identical group No.71296 (1 seq.)
>W141278991
JAFZ01000001
Synergistota
Aminobacterium mobile DSM 12262 [JAFZ]
934055
934144
+
Ser
GCT
[ENA]
¡û
Identical group No.79613 (3 seq.)
>W141146876
AWWC01000028
Synergistota
Jonquetella sp. BV3C21 [AWWC]
858
770
-
Ser
GCT
[ENA]
¡û
>W09132964
ACOO02000018
Synergistota
Jonquetella anthropi E3_33 E1 [ACOO]
130935
131023
+
Ser
GCT
[ENA]
¡û
>W121017488
AGRU01000003
Synergistota
Jonquetella anthropi DSM 22815 [AGRU]
237522
237610
+
Ser
GCT
[ENA]
¡û
Identical group No.83256 (2 seq.)
>WENV170657163
JTFO01094296
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
18
106
+
Ser
GCT
[ENA]
¢þ
>W1710608695
FXBB01000013
Synergistota
Dethiosulfovibrio salsuginis [FXBB]
7039
6951
-
Ser
GCT
[ENA]
¡û
Identical group No.84651 (1 seq.)
>W09108925
ABTR01000008
Synergistota
Dethiosulfovibrio peptidovorans DSM 11002 [ABTR]
28663
28751
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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