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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Thermoproteota
Anticodon = TCC
HIT:
24 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.2586 (1 seq.)
>A171005709
CP009961
Thermoproteota
Infirmifilum uzonense 1807-2 [CP009961]
1461984
1461889
-
Gly
TCC
-
¡û
Identical group No.235062 (2 seq.)
>A173000045
CP002051
Thermoproteota
Staphylothermus hellenicus DSM 12710 [CP002051]
1359033
1358955
-
Gly
TCC
-
¡û
>W1630000134
ADGW01000003
Thermoproteota
Staphylothermus hellenicus DSM 12710 [ADGW]
168321
168400
+
Gly
TCC
[ENA]
¡û
Identical group No.235129 (26 seq.)
>A171000559
CP001400
Thermoproteota
Sulfolobus islandicus M.14.25 [CP001400]
1588082
1588005
-
Gly
TCC
-
¡û
>A171000586
CP001401
Thermoproteota
Sulfolobus islandicus M.16.27 [CP001401]
1712497
1712420
-
Gly
TCC
-
¡û
>A171000613
CP001402
Thermoproteota
Sulfolobus islandicus M.16.4 [CP001402]
1614210
1614133
-
Gly
TCC
-
¡û
>A171000640
CP001403
Thermoproteota
Sulfolobus islandicus Y.G.57.14 [CP001403]
1645996
1645919
-
Gly
TCC
-
¡û
>A171000656
CP001404
Thermoproteota
Sulfolobus islandicus Y.N.15.51 [CP001404]
980549
980626
+
Gly
TCC
-
¡û
>A171001044
CP001800
Thermoproteota
Saccharolobus solfataricus [CP001800]
1268587
1268664
+
Gly
TCC
-
¡û
>A171001932
CP002425
Thermoproteota
Sulfolobus islandicus REY15A [CP002425]
1493747
1493670
-
Gly
TCC
-
¡û
>A171001958
CP002426
Thermoproteota
Sulfolobus islandicus HVE10/4 [CP002426]
1638233
1638156
-
Gly
TCC
-
¡û
>A171003453
CP003928
Thermoproteota
Sulfolobus islandicus LAL14/1 [CP003928]
1479222
1479145
-
Gly
TCC
-
¡û
>A171005939
CP011055
Thermoproteota
Saccharolobus solfataricus SARC-B [CP011055]
1326762
1326839
+
Gly
TCC
-
¡û
>A171005966
CP011056
Thermoproteota
Saccharolobus solfataricus SARC-C [CP011056]
1326760
1326837
+
Gly
TCC
-
¡û
>A171005993
CP011057
Thermoproteota
Saccharolobus solfataricus SULA [CP011057]
1326778
1326855
+
Gly
TCC
-
¡û
>A171007583
LT549890
Thermoproteota
Saccharolobus solfataricus P1 [LT549890]
339891
339968
+
Gly
TCC
-
¡û
>At0474
AE006641
Thermoproteota
Saccharolobus solfataricus P2 [AE006641]
338925
339000
+
Gly
TCC
[Ensembl]
¡û
>W1610001091
ACQS01000010
Thermoproteota
Saccharolobus solfataricus Feb-98 [ACQS]
62482
62405
-
Gly
TCC
[ENA]
¡û
>W1610001505
ACUK01000025
Thermoproteota
Saccharolobus solfataricus Feb-98 [ACUK]
61701
61624
-
Gly
TCC
[ENA]
¡û
>W1610004558
AHJK01000001
Thermoproteota
Sulfolobus islandicus M.16.2 [AHJK]
1643764
1643687
-
Gly
TCC
[ENA]
¡û
>W1610004588
AHJL01000005
Thermoproteota
Sulfolobus islandicus M.16.12 [AHJL]
667936
667859
-
Gly
TCC
[ENA]
¡û
>W1610004616
AHJM01000003
Thermoproteota
Sulfolobus islandicus M.16.13 [AHJM]
762958
762881
-
Gly
TCC
[ENA]
¡û
>W1610004645
AHJN01000003
Thermoproteota
Sulfolobus islandicus M.16.22 [AHJN]
668547
668470
-
Gly
TCC
[ENA]
¡û
>W1610004673
AHJO01000001
Thermoproteota
Sulfolobus islandicus M.16.23 [AHJO]
1626430
1626353
-
Gly
TCC
[ENA]
¡û
>W1610004703
AHJP01000004
Thermoproteota
Sulfolobus islandicus M.16.30 [AHJP]
734147
734070
-
Gly
TCC
[ENA]
¡û
>W1610004731
AHJQ01000001
Thermoproteota
Sulfolobus islandicus M.16.40 [AHJQ]
1645787
1645710
-
Gly
TCC
[ENA]
¡û
>W1610004760
AHJR01000001
Thermoproteota
Sulfolobus islandicus M.16.43 [AHJR]
1606713
1606636
-
Gly
TCC
[ENA]
¡û
>W1610004790
AHJS01000002
Thermoproteota
Sulfolobus islandicus M.16.46 [AHJS]
796951
796874
-
Gly
TCC
[ENA]
¡û
>W1610004818
AHJT01000001
Thermoproteota
Sulfolobus islandicus M.16.47 [AHJT]
1656675
1656598
-
Gly
TCC
[ENA]
¡û
Identical group No.235147 (6 seq.)
>A178000167
CP002100
Thermoproteota
Vulcanisaeta distributa DSM 14429 [CP002100]
2115720
2115814
+
Gly
TCC
-
¡û
>A178000209
CP002529
Thermoproteota
Vulcanisaeta moutnovskia 768-28 [CP002529]
620022
619930
-
Gly
TCC
-
¡û
>W1610045268
BBBI01000018
Thermoproteota
Vulcanisaeta distributa JCM 11216 [BBBI]
16034
15956
-
Gly
TCC
[ENA]
¡û
>W1610045295
BBBK01000007
Thermoproteota
Vulcanisaeta souniana JCM 11219 [BBBK]
57078
57000
-
Gly
TCC
[ENA]
¡û
>W1610046809
BBCT01000012
Thermoproteota
Vulcanisaeta distributa JCM 11215 [BBCT]
89008
88930
-
Gly
TCC
[ENA]
¡û
>W1610047691
BBDN01000014
Thermoproteota
Vulcanisaeta sp. JCM 16159 [BBDN]
15953
15875
-
Gly
TCC
[ENA]
¡û
Identical group No.235165 (4 seq.)
>A178000261
CP002817
Thermoproteota
Sulfolobus acidocaldarius N8 [CP002817]
2110564
2110474
-
Gly
TCC
-
¡û
>A178000272
CP002818
Thermoproteota
Sulfolobus acidocaldarius Ron12/I [CP002818]
2158184
2158094
-
Gly
TCC
-
¡û
>A179000459
CP006977
Thermoproteota
Sulfolobus acidocaldarius SUSAZ [CP006977]
1997175
1997085
-
Gly
TCC
-
¡û
>At0465
CP000077
Thermoproteota
Sulfolobus acidocaldarius DSM 639 [CP000077]
2160161
2160071
-
Gly
TCC
[Ensembl]
¡û
Identical group No.235322 (1 seq.)
>At0538
BA000023
Thermoproteota
Sulfurisphaera tokodaii str. 7 [BA000023]
2204279
2204354
+
Gly
TCC
[Ensembl]
¡û
Identical group No.235412 (2 seq.)
>A171001663
CP002098
Thermoproteota
Ignisphaera aggregans DSM 17230 [CP002098]
1843980
1844058
+
Gly
TCC
-
¡û
>WENV181229129
OFEJ01000544
[OFEJ] sediment metagenome; Joseph's Coat, Yellowstone National Park, Wyoming, USA
437
362
-
Gly
TCC
[ENA]
¢þ
Identical group No.235719 (3 seq.)
>A171000130
AP012489
Thermoproteota
Aeropyrum camini SY1 = JCM 12091 [AP012489]
1467575
1467497
-
Gly
TCC
-
¡û
>At0051
BA000002
Thermoproteota
Aeropyrum pernix K1 [BA000002]
1528663
1528585
-
Gly
TCC
[Ensembl]
¡û
>W1910015311
BDMD01000056
Thermoproteota
Aeropyrum pernix YK1-12-2013 [BDMD]
8173
8251
+
Gly
TCC
[ENA]
¡û
Identical group No.235731 (8 seq.)
>A173000014
CP001140
Thermoproteota
Desulfurococcus amylolyticus 1221n [CP001140]
1064019
1063943
-
Gly
TCC
-
¡û
>A173000040
CP001939
Thermoproteota
Thermosphaera aggregans DSM 11486 [CP001939]
861062
861137
+
Gly
TCC
-
¡û
>A173000054
CP002363
Thermoproteota
Desulfurococcus mucosus DSM 2162 [CP002363]
1093653
1093576
-
Gly
TCC
-
¡û
>A173000097
CP003321
Thermoproteota
Desulfurococcus amylolyticus DSM 16532 [CP003321]
1174517
1174440
-
Gly
TCC
-
¡û
>At0394
CP000575
Thermoproteota
Staphylothermus marinus F1 [CP000575]
1022056
1022131
+
Gly
TCC
[Ensembl]
¡û
>W1930000084
AUQX01000004
Thermoproteota
Desulfurococcus mucosus DSM 2161 [AUQX]
59515
59438
-
Gly
TCC
[ENA]
¡û
>W1630000248
AGIW01000001
Thermoproteota
Desulfurococcus amylolyticus DSM 16532 [AGIW]
1319918
1319995
+
Gly
TCC
[ENA]
¡û
>W1630001469
AZUU01000002
Thermoproteota
Desulfurococcus amylolyticus Z-533 [AZUU]
638507
638430
-
Gly
TCC
[ENA]
¡û
Identical group No.235871 (7 seq.)
>A179000319
CP003098
Thermoproteota
Pyrobaculum ferrireducens 1860 [CP003098]
1341961
1341871
-
Gly
TCC
-
¡û
>A179000351
CP003316
Thermoproteota
Pyrobaculum oguniense TE7 [CP003316]
1134513
1134423
-
Gly
TCC
-
¡û
>A179000603
CP012158
Thermoproteota
Pyrobaculum sp. WP30 [CP012158]
1662268
1662178
-
Gly
TCC
-
¡û
>A172000046
CP012158
Thermoproteota
Pyrobaculum sp. WP30 [CP012158]
1662268
1662178
-
Gly
TCC
-
¡û
>At0258
CP000660
Thermoproteota
Pyrobaculum arsenaticum DSM 13514 [CP000660]
895710
895620
-
Gly
TCC
[Ensembl]
¡û
>At0324
CP000561
Thermoproteota
Pyrobaculum calidifontis JCM 11548 [CP000561]
1821412
1821305
-
Gly
TCC
[Ensembl]
¡û
>W1910595848
JZWT01000089
Thermoproteota
Thermoproteus sp. AZ2 [JZWT]
6134
6058
-
Gly
TCC
[ENA]
¡û
Identical group No.236317 (2 seq.)
>At0202
AE009441
Thermoproteota
Pyrobaculum aerophilum str. IM2 [AE009441]
1740444
1740534
+
Gly
TCC
[Ensembl]
¡û
>At0329
CP000504
Thermoproteota
Pyrobaculum islandicum DSM 4184 [CP000504]
335212
335303
+
Gly
TCC
[Ensembl]
¡û
Identical group No.236987 (2 seq.)
>A173000067
CP002535
Thermoproteota
Acidianus hospitalis W1 [CP002535]
1139453
1139376
-
Gly
TCC
-
¡û
>W1930037190
QEFD01000063
Thermoproteota
Acidianus hospitalis [QEFD]
6069
5992
-
Gly
TCC
[ENA]
¡û
Identical group No.237032 (1 seq.)
>A171003221
CP003423
Thermoproteota
Fervidicoccus fontis Kam940 [CP003423]
157237
157162
-
Gly
TCC
-
¡û
Identical group No.237726 (2 seq.)
>A171002154
CP002656
Thermoproteota
Metallosphaera cuprina Ar-4 [CP002656]
354774
354697
-
Gly
TCC
-
¡û
>W1610045058
BBBA01000003
Thermoproteota
Metallosphaera hakonensis JCM 8857 [BBBA]
21414
21492
+
Gly
TCC
[ENA]
¡û
Identical group No.237735 (1 seq.)
>A171002431
CP002838
Thermoproteota
Pyrolobus fumarii 1A [CP002838]
1074570
1074492
-
Gly
TCC
-
¡û
Identical group No.238250 (2 seq.)
>A171003238
CP003531
Thermoproteota
Thermogladius calderae 1633 [CP003531]
549928
550004
+
Gly
TCC
-
¡û
>WENV181285421
OFGS01000312
[OFGS] hot springs metagenome; Water and soil
8100
8175
+
Gly
TCC
[ENA]
¢þ
Identical group No.238447 (1 seq.)
>A171000532
CP001399
Thermoproteota
Sulfolobus islandicus L.S.2.15 [CP001399]
1684835
1684758
-
Gly
TCC
-
¡û
Identical group No.238450 (3 seq.)
>A171006435
CP013011
Thermoproteota
Pyrodictium delaneyi Su06 [CP013011]
2015769
2015847
+
Gly
TCC
-
¡û
>At0131
CP000493
Thermoproteota
Hyperthermus butylicus DSM 5456 [CP000493]
510728
510650
-
Gly
TCC
[Ensembl]
¡û
>W1910870012
NCQP01000002
Thermoproteota
Pyrodictium delaneyi Hulk [NCQP]
75007
74929
-
Gly
TCC
[ENA]
¡û
Identical group No.238554 (3 seq.)
>A171003934
CP006867
Thermoproteota
Ignicoccus islandicus DSM 13165 [CP006867]
685183
685105
-
Gly
TCC
-
¡û
>WENV180275585
OBHT01073961
[OBHT] metagenome; hydrothermal vent
90
12
-
Gly
TCC
[ENA]
¢þ
>At2219
CP000816
Thermoproteota
Ignicoccus hospitalis KIN4/I [CP000816]
1290865
1290787
-
Gly
TCC
[Ensembl]
¡û
Identical group No.238965 (1 seq.)
>A171006782
CP017006
Thermoproteota
Sulfolobus sp. A20 [CP017006]
706616
706540
-
Gly
TCC
-
¡û
Identical group No.239598 (1 seq.)
>A173000032
CP001742
Thermoproteota
Acidilobus saccharovorans 345-15 [CP001742]
1404592
1404670
+
Gly
TCC
-
¡û
Identical group No.240405 (1 seq.)
>A171003131
CP003378
Thermoproteota
Caldisphaera lagunensis DSM 15908 [CP003378]
954690
954765
+
Gly
TCC
-
¡û
Identical group No.244850 (7 seq.)
>A171006249
CP012172
Thermoproteota
Metallosphaera sedula ARS50-1 [CP012172]
1830511
1830588
+
Gly
TCC
-
¡û
>A171006268
CP012173
Thermoproteota
Metallosphaera sedula ARS50-2 [CP012173]
1830507
1830584
+
Gly
TCC
-
¡û
>A171006287
CP012174
Thermoproteota
Metallosphaera sedula ARS120-1 [CP012174]
1830509
1830586
+
Gly
TCC
-
¡û
>A171006306
CP012175
Thermoproteota
Metallosphaera sedula ARS120-2 [CP012175]
1830511
1830588
+
Gly
TCC
-
¡û
>A171006325
CP012176
Thermoproteota
Metallosphaera sedula SARC-M1 [CP012176]
1830511
1830588
+
Gly
TCC
-
¡û
>At0159
CP000682
Thermoproteota
Metallosphaera sedula DSM 5348 [CP000682]
1830495
1830572
+
Gly
TCC
[Ensembl]
¡û
>W1610000292
AAVI01000003
Thermoproteota
Metallosphaera sedula DSM 5348 [AAVI]
231318
231241
-
Gly
TCC
[ENA]
¡û
Identical group No.288133 (4 seq.)
>A171003861
CP006646
Thermoproteota
Thermofilum adornatum 1910b [CP006646]
532231
532155
-
Gly
TCC
-
¡û
>A171004317
CP007493
Thermoproteota
Thermofilum adornatum 1505 [CP007493]
1484753
1484677
-
Gly
TCC
-
¡û
>WENV181229214
OFEJ01001673
[OFEJ] sediment metagenome; Joseph's Coat, Yellowstone National Park, Wyoming, USA
6082
6006
-
Gly
TCC
[ENA]
¢þ
>At0596
CP000505
Thermoproteota
Thermofilum pendens Hrk 5 [CP000505]
528662
528566
-
Gly
TCC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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