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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Anticodon = CAA
HIT:
9 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.181905 (1 seq.)
>FG090100366
AL590444
Microsporidia
Encephalitozoon_cuniculi_GB-M1
119683
119602
-
Leu
CAA
[ENA]
¡û
Identical group No.181906 (18 seq.)
>FU090900020
CR380948
Ascomycota
Candida glabrata CBS 138 CBS138
93733
93851
+
Leu
CAA
[ENA]
¡û
>FU090900021
CR380948
Ascomycota
Candida glabrata CBS 138 CBS138
309417
309535
+
Leu
CAA
[ENA]
¡û
>FU090900023
CR380948
Ascomycota
Candida glabrata CBS 138 CBS138
8880
8762
-
Leu
CAA
[ENA]
¡û
>FU090900026
CR380950
Ascomycota
Candida glabrata CBS 138 CBS138
198685
198566
-
Leu
CAA
[ENA]
¡û
>FU090900028
CR380952
Ascomycota
Candida glabrata CBS 138 CBS138
879028
878909
-
Leu
CAA
[ENA]
¡û
>FU090900034
CR380953
Ascomycota
Candida glabrata CBS 138 CBS138
627875
627757
-
Leu
CAA
[ENA]
¡û
>FU090900035
CR380953
Ascomycota
Candida glabrata CBS 138 CBS138
402954
402836
-
Leu
CAA
[ENA]
¡û
>FU090900044
CR380956
Ascomycota
Candida glabrata CBS 138 CBS138
846337
846218
-
Leu
CAA
[ENA]
¡û
>SC0900048
NC_001133
Ascomycota
Saccharomyces cerevisiae S288c
181135
181248
+
Leu
CAA
[ENA]
¡û
>SC0900049
NC_001135
Ascomycota
Saccharomyces cerevisiae S288c
90859
90972
+
Leu
CAA
[ENA]
¡û
>SC0900053
NC_001136
Ascomycota
Saccharomyces cerevisiae S288c
1461821
1461707
-
Leu
CAA
[ENA]
¡û
>SC0900058
NC_001139
Ascomycota
Saccharomyces cerevisiae S288c
205527
205640
+
Leu
CAA
[ENA]
¡û
>SC0900059
NC_001139
Ascomycota
Saccharomyces cerevisiae S288c
423098
423211
+
Leu
CAA
[ENA]
¡û
>SC0900061
NC_001139
Ascomycota
Saccharomyces cerevisiae S288c
857496
857383
-
Leu
CAA
[ENA]
¡û
>SC0900068
NC_001143
Ascomycota
Saccharomyces cerevisiae S288c
458200
458313
+
Leu
CAA
[ENA]
¡û
>SC0900070
NC_001144
Ascomycota
Saccharomyces cerevisiae S288c
628385
628499
+
Leu
CAA
[ENA]
¡û
>SC0900073
NC_001145
Ascomycota
Saccharomyces cerevisiae S288c
504894
505007
+
Leu
CAA
[ENA]
¡û
>SC0900077
NC_001146
Ascomycota
Saccharomyces cerevisiae S288c
443008
443121
+
Leu
CAA
[ENA]
¡û
Identical group No.187360 (8 seq.)
>FG090100531
CM000437
Ascomycota
Pichia stipitis CBS 6054
1078189
1078108
-
Leu
CAA
[ENA]
¡û
>FG090100539
CP000496
Ascomycota
Pichia stipitis CBS 6054
263006
263087
+
Leu
CAA
[ENA]
¡û
>FG090100540
CP000496
Ascomycota
Pichia stipitis CBS 6054
264207
264288
+
Leu
CAA
[ENA]
¡û
>FG090100541
CP000496
Ascomycota
Pichia stipitis CBS 6054
265855
265936
+
Leu
CAA
[ENA]
¡û
>FG090100572
CP000499
Ascomycota
Pichia stipitis CBS 6054
1716892
1716975
+
Leu
CAA
[ENA]
¡û
>FG090100594
CP000500
Ascomycota
Pichia stipitis CBS 6054
25035
24952
-
Leu
CAA
[ENA]
¡û
>FG090100597
CP000501
Ascomycota
Pichia stipitis CBS 6054
1093994
1094077
+
Leu
CAA
[ENA]
¡û
>FG090100598
CP000501
Ascomycota
Pichia stipitis CBS 6054
1093025
1092944
-
Leu
CAA
[ENA]
¡û
Identical group No.194237 (4 seq.)
>FU090900187
CU329671
Ascomycota
Schizosaccharomyces_pombe_972h-
1644183
1644083
-
Leu
CAA
[ENA]
¡û
>FU090900188
CU329671
Ascomycota
Schizosaccharomyces_pombe_972h-
1598845
1598745
-
Leu
CAA
[ENA]
¡û
>FU090900193
CU329672
Ascomycota
Schizosaccharomyces_pombe_972h-
1102809
1102909
+
Leu
CAA
[ENA]
¡û
>FU090900196
CU329672
Ascomycota
Schizosaccharomyces_pombe_972h-
1096185
1096085
-
Leu
CAA
[ENA]
¡û
Identical group No.199431 (7 seq.)
>FU090900001
AE016814
Ascomycota
Ashbya gossypii ATCC 10895
15918
16028
+
Leu
CAA
[ENA]
¡û
>FU090900002
AE016814
Ascomycota
Ashbya gossypii ATCC 10895
284548
284659
+
Leu
CAA
[ENA]
¡û
>FU090900013
AE016818
Ascomycota
Ashbya gossypii ATCC 10895
55482
55372
-
Leu
CAA
[ENA]
¡û
>FG091900173
AE016819
Ascomycota
Ashbya gossypii ATCC 10895
665313
665424
+
Leu
CAA
[ENA]
¡û
>FG091900178
AE016819
Ascomycota
Ashbya gossypii ATCC 10895
732666
732556
-
Leu
CAA
[ENA]
¡û
>FG091900181
AE016819
Ascomycota
Ashbya gossypii ATCC 10895
543262
543151
-
Leu
CAA
[ENA]
¡û
>FG091900183
AE016820
Ascomycota
Ashbya gossypii ATCC 10895
734970
735081
+
Leu
CAA
[ENA]
¡û
Identical group No.201383 (3 seq.)
>FU090900322
CR382132
Ascomycota
Yarrowia lipolytica CLIB122
215603
215711
+
Leu
CAA
[ENA]
¡û
>FG091900297
CR382132
Ascomycota
Yarrowia lipolytica CLIB122
3719392
3719284
-
Leu
CAA
[ENA]
¡û
>FG091900303
CR382132
Ascomycota
Yarrowia lipolytica CLIB122
3449637
3449529
-
Leu
CAA
[ENA]
¡û
Identical group No.205474 (4 seq.)
>FG090100241
CR382133
Ascomycota
Debaryomyces hansenii CBS767
327310
327229
-
Leu
CAA
[ENA]
¡û
>FG090100243
CR382133
Ascomycota
Debaryomyces hansenii CBS767
88527
88446
-
Leu
CAA
[ENA]
¡û
>FG090100270
CR382136
Ascomycota
Debaryomyces hansenii CBS767
357995
357912
-
Leu
CAA
[ENA]
¡û
>FG090100346
CR382139
Ascomycota
Debaryomyces hansenii CBS767
1930797
1930716
-
Leu
CAA
[ENA]
¡û
Identical group No.211977 (7 seq.)
>FU090900145
CR382124
Ascomycota
Kluyveromyces lactis NRRL Y-1140
543943
543828
-
Leu
CAA
[ENA]
¡û
>FU090900148
CR382124
Ascomycota
Kluyveromyces lactis NRRL Y-1140
85556
85441
-
Leu
CAA
[ENA]
¡û
>FU090900152
CR382126
Ascomycota
Kluyveromyces lactis NRRL Y-1140
1116489
1116604
+
Leu
CAA
[ENA]
¡û
>FU090900154
CR382126
Ascomycota
Kluyveromyces lactis NRRL Y-1140
1392272
1392387
+
Leu
CAA
[ENA]
¡û
>FU090900156
CR382126
Ascomycota
Kluyveromyces lactis NRRL Y-1140
1995860
1995975
+
Leu
CAA
[ENA]
¡û
>FU090900159
CR382126
Ascomycota
Kluyveromyces lactis NRRL Y-1140
2117832
2117717
-
Leu
CAA
[ENA]
¡û
>FU090900160
CR382126
Ascomycota
Kluyveromyces lactis NRRL Y-1140
1625279
1625164
-
Leu
CAA
[ENA]
¡û
Identical group No.232534 (3 seq.)
>FU090900068
AE017347
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
1104590
1104482
-
Leu
CAA
[ENA]
¡û
>FU090900074
AE017349
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
666869
666977
+
Leu
CAA
[ENA]
¡û
>FG091900215
AE017348
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
1016920
1017028
+
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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