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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Anticodon = CCA
HIT:
8 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.462484 (1 seq.)
>FG090800021
AE017345
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
293214
293127
-
Trp
CCA
[ENA]
¡û
Identical group No.528428 (3 seq.)
>FG090100609
CU329671
Ascomycota
Schizosaccharomyces_pombe_972h-
717075
717149
+
Trp
CCA
[ENA]
¡û
>FG090100617
CU329671
Ascomycota
Schizosaccharomyces_pombe_972h-
1774860
1774932
+
Trp
CCA
[ENA]
¡û
>FG092110027
CU329670
Ascomycota
Schizosaccharomyces_pombe_972h-
3559826
3559754
-
Trp
CCA
[ENA]
¡û
Identical group No.659365 (14 seq.)
>FU090900014
AE016819
Ascomycota
Ashbya gossypii ATCC 10895
413223
413322
+
Trp
CCA
[ENA]
¡û
>FU090900022
CR380948
Ascomycota
Candida glabrata CBS 138 CBS138
373322
373214
-
Trp
CCA
[ENA]
¡û
>FU090900027
CR380952
Ascomycota
Candida glabrata CBS 138 CBS138
610507
610614
+
Trp
CCA
[ENA]
¡û
>FU090900029
CR380952
Ascomycota
Candida glabrata CBS 138 CBS138
705193
705086
-
Trp
CCA
[ENA]
¡û
>FU090900032
CR380953
Ascomycota
Candida glabrata CBS 138 CBS138
897513
897621
+
Trp
CCA
[ENA]
¡û
>FU090900046
CR380957
Ascomycota
Candida glabrata CBS 138 CBS138
710349
710456
+
Trp
CCA
[ENA]
¡û
>FU090900140
CR382124
Ascomycota
Kluyveromyces lactis NRRL Y-1140
1215339
1215447
+
Trp
CCA
[ENA]
¡û
>FU090900151
CR382125
Ascomycota
Kluyveromyces lactis NRRL Y-1140
438614
438507
-
Trp
CCA
[ENA]
¡û
>FU090900158
CR382126
Ascomycota
Kluyveromyces lactis NRRL Y-1140
2459676
2459784
+
Trp
CCA
[ENA]
¡û
>FG091900168
AE016817
Ascomycota
Ashbya gossypii ATCC 10895
928209
928110
-
Trp
CCA
[ENA]
¡û
>FG091900172
AE016819
Ascomycota
Ashbya gossypii ATCC 10895
643950
644048
+
Trp
CCA
[ENA]
¡û
>FG091900179
AE016819
Ascomycota
Ashbya gossypii ATCC 10895
663531
663433
-
Trp
CCA
[ENA]
¡û
>FG091900185
AE016820
Ascomycota
Ashbya gossypii ATCC 10895
1328360
1328261
-
Trp
CCA
[ENA]
¡û
>FG091900225
CR382123
Ascomycota
Kluyveromyces lactis NRRL Y-1140
1031592
1031485
-
Trp
CCA
[ENA]
¡û
Identical group No.675944 (8 seq.)
>FG090100283
CR382137
Ascomycota
Debaryomyces hansenii CBS767
1374730
1374803
+
Trp
CCA
[ENA]
¡û
>FG090100326
CR382138
Ascomycota
Debaryomyces hansenii CBS767
1215748
1215675
-
Trp
CCA
[ENA]
¡û
>FG090100327
CR382138
Ascomycota
Debaryomyces hansenii CBS767
429489
429416
-
Trp
CCA
[ENA]
¡û
>FG090100339
CR382139
Ascomycota
Debaryomyces hansenii CBS767
1479580
1479653
+
Trp
CCA
[ENA]
¡û
>FG090100519
CM000437
Ascomycota
Pichia stipitis CBS 6054
3082124
3082197
+
Trp
CCA
[ENA]
¡û
>FG090100528
CM000437
Ascomycota
Pichia stipitis CBS 6054
1780178
1780105
-
Trp
CCA
[ENA]
¡û
>FG090100555
CP000498
Ascomycota
Pichia stipitis CBS 6054
1299304
1299231
-
Trp
CCA
[ENA]
¡û
>FG091100076
CP000496
Ascomycota
Pichia stipitis CBS 6054
2229026
2228953
-
Trp
CCA
[ENA]
¡û
Identical group No.687817 (14 seq.)
>FU090900216
CR382128
Ascomycota
Yarrowia lipolytica CLIB122
2652246
2652332
+
Trp
CCA
[ENA]
¡û
>FU090900230
CR382129
Ascomycota
Yarrowia lipolytica CLIB122
664941
665028
+
Trp
CCA
[ENA]
¡û
>FU090900248
CR382129
Ascomycota
Yarrowia lipolytica CLIB122
2551313
2551228
-
Trp
CCA
[ENA]
¡û
>FU090900256
CR382129
Ascomycota
Yarrowia lipolytica CLIB122
286336
286251
-
Trp
CCA
[ENA]
¡û
>FU090900279
CR382130
Ascomycota
Yarrowia lipolytica CLIB122
210924
210839
-
Trp
CCA
[ENA]
¡û
>FU090900308
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
2547332
2547246
-
Trp
CCA
[ENA]
¡û
>FU090900314
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
1739685
1739600
-
Trp
CCA
[ENA]
¡û
>FG091200014
CR382132
Ascomycota
Yarrowia lipolytica CLIB122
3423048
3422963
-
Trp
CCA
[ENA]
¡û
>FG091900246
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
1404668
1404753
+
Trp
CCA
[ENA]
¡û
>FG091900261
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
1568219
1568134
-
Trp
CCA
[ENA]
¡û
>FG091900263
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
1424537
1424452
-
Trp
CCA
[ENA]
¡û
>FG091900271
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
861901
861816
-
Trp
CCA
[ENA]
¡û
>FG091900304
CR382132
Ascomycota
Yarrowia lipolytica CLIB122
3423047
3422964
-
Trp
CCA
[ENA]
¡û
>FG091900315
CR382132
Ascomycota
Yarrowia lipolytica CLIB122
1021277
1021192
-
Trp
CCA
[ENA]
¡û
Identical group No.706727 (1 seq.)
>FG090100370
AL590446
Microsporidia
Encephalitozoon_cuniculi_GB-M1
120887
120959
+
Trp
CCA
[ENA]
¡û
Identical group No.706760 (2 seq.)
>FG090800057
AE017352
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
593521
593603
+
Trp
CCA
[ENA]
¡û
>FG091900205
AE017344
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
1713962
1714044
+
Trp
CCA
[ENA]
¡û
Identical group No.714662 (6 seq.)
>SC0900060
NC_001139
Ascomycota
Saccharomyces cerevisiae S288c
878820
878715
-
Trp
CCA
[ENA]
¡û
>SC0900062
NC_001139
Ascomycota
Saccharomyces cerevisiae S288c
287461
287356
-
Trp
CCA
[ENA]
¡û
>SC0900066
NC_001142
Ascomycota
Saccharomyces cerevisiae S288c
416030
415925
-
Trp
CCA
[ENA]
¡û
>SC0900067
NC_001143
Ascomycota
Saccharomyces cerevisiae S288c
302562
302667
+
Trp
CCA
[ENA]
¡û
>SC0900075
NC_001145
Ascomycota
Saccharomyces cerevisiae S288c
379407
379302
-
Trp
CCA
[ENA]
¡û
>SC0900084
NC_001148
Ascomycota
Saccharomyces cerevisiae S288c
56274
56169
-
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK