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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Anticodon = GTA
HIT:
11 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.235309 (4 seq.)
>FG090800051
AE017351
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
95282
95190
-
Tyr
GTA
[ENA]
¡û
>FG090800059
AE017353
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
679249
679341
+
Tyr
GTA
[ENA]
¡û
>FG091800015
AE017344
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
752920
752829
-
Tyr
GTA
[ENA]
¡û
>FG091800016
AE017344
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
772440
772532
+
Tyr
GTA
[ENA]
¡û
Identical group No.242052 (6 seq.)
>FU090900033
CR380953
Ascomycota
Candida glabrata CBS 138 CBS138
859660
859573
-
Tyr
GTA
[ENA]
¡û
>FU090900037
CR380954
Ascomycota
Candida glabrata CBS 138 CBS138
180340
180427
+
Tyr
GTA
[ENA]
¡û
>FU090900040
CR380955
Ascomycota
Candida glabrata CBS 138 CBS138
236933
237020
+
Tyr
GTA
[ENA]
¡û
>FU090900047
CR380957
Ascomycota
Candida glabrata CBS 138 CBS138
1026436
1026523
+
Tyr
GTA
[ENA]
¡û
>FU090900048
CR380957
Ascomycota
Candida glabrata CBS 138 CBS138
1087132
1087219
+
Tyr
GTA
[ENA]
¡û
>FU090900050
CR380958
Ascomycota
Candida glabrata CBS 138 CBS138
177418
177331
-
Tyr
GTA
[ENA]
¡û
Identical group No.245473 (1 seq.)
>FU090900005
AE016815
Ascomycota
Ashbya gossypii ATCC 10895
183488
183404
-
Tyr
GTA
[ENA]
¡û
Identical group No.248379 (14 seq.)
>FU090900204
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
406725
406639
-
Tyr
GTA
[ENA]
¡û
>FU090900229
CR382129
Ascomycota
Yarrowia lipolytica CLIB122
644075
644162
+
Tyr
GTA
[ENA]
¡û
>FU090900234
CR382129
Ascomycota
Yarrowia lipolytica CLIB122
1642683
1642771
+
Tyr
GTA
[ENA]
¡û
>FU090900236
CR382129
Ascomycota
Yarrowia lipolytica CLIB122
1824434
1824521
+
Tyr
GTA
[ENA]
¡û
>FU090900243
CR382129
Ascomycota
Yarrowia lipolytica CLIB122
2766455
2766544
+
Tyr
GTA
[ENA]
¡û
>FU090900267
CR382130
Ascomycota
Yarrowia lipolytica CLIB122
1657820
1657909
+
Tyr
GTA
[ENA]
¡û
>FU090900275
CR382130
Ascomycota
Yarrowia lipolytica CLIB122
1209699
1209611
-
Tyr
GTA
[ENA]
¡û
>FU090900282
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
718993
719082
+
Tyr
GTA
[ENA]
¡û
>FU090900286
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
1380273
1380362
+
Tyr
GTA
[ENA]
¡û
>FU090900295
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
2608223
2608311
+
Tyr
GTA
[ENA]
¡û
>FG091900235
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
761445
761533
+
Tyr
GTA
[ENA]
¡û
>FG091900244
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
1322116
1322203
+
Tyr
GTA
[ENA]
¡û
>FG091900252
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
1576119
1576207
+
Tyr
GTA
[ENA]
¡û
>FG091900291
CR382132
Ascomycota
Yarrowia lipolytica CLIB122
3667124
3667216
+
Tyr
GTA
[ENA]
¡û
Identical group No.253186 (5 seq.)
>FU090900131
CR382121
Ascomycota
Kluyveromyces lactis NRRL Y-1140
932543
932445
-
Tyr
GTA
[ENA]
¡û
>FU090900132
CR382121
Ascomycota
Kluyveromyces lactis NRRL Y-1140
731842
731744
-
Tyr
GTA
[ENA]
¡û
>FU090900135
CR382122
Ascomycota
Kluyveromyces lactis NRRL Y-1140
584364
584462
+
Tyr
GTA
[ENA]
¡û
>FU090900141
CR382124
Ascomycota
Kluyveromyces lactis NRRL Y-1140
1318811
1318909
+
Tyr
GTA
[ENA]
¡û
>FG091900223
CR382123
Ascomycota
Kluyveromyces lactis NRRL Y-1140
1337615
1337713
+
Tyr
GTA
[ENA]
¡û
Identical group No.254973 (3 seq.)
>FU090900009
AE016818
Ascomycota
Ashbya gossypii ATCC 10895
586537
586621
+
Tyr
GTA
[ENA]
¡û
>FU090900016
AE016819
Ascomycota
Ashbya gossypii ATCC 10895
43583
43499
-
Tyr
GTA
[ENA]
¡û
>FG091900186
AE016820
Ascomycota
Ashbya gossypii ATCC 10895
1217235
1217151
-
Tyr
GTA
[ENA]
¡û
Identical group No.254974 (8 seq.)
>SC0900052
NC_001136
Ascomycota
Saccharomyces cerevisiae S288c
946308
946396
+
Tyr
GTA
[ENA]
¡û
>SC0900056
NC_001138
Ascomycota
Saccharomyces cerevisiae S288c
167430
167518
+
Tyr
GTA
[ENA]
¡û
>SC0900057
NC_001138
Ascomycota
Saccharomyces cerevisiae S288c
210695
210607
-
Tyr
GTA
[ENA]
¡û
>SC0900064
NC_001142
Ascomycota
Saccharomyces cerevisiae S288c
354239
354327
+
Tyr
GTA
[ENA]
¡û
>SC0900065
NC_001142
Ascomycota
Saccharomyces cerevisiae S288c
543037
542949
-
Tyr
GTA
[ENA]
¡û
>SC0900072
NC_001145
Ascomycota
Saccharomyces cerevisiae S288c
168795
168883
+
Tyr
GTA
[ENA]
¡û
>SC0900074
NC_001145
Ascomycota
Saccharomyces cerevisiae S288c
837927
838015
+
Tyr
GTA
[ENA]
¡û
>SC0900080
NC_001147
Ascomycota
Saccharomyces cerevisiae S288c
288193
288281
+
Tyr
GTA
[ENA]
¡û
Identical group No.306520 (9 seq.)
>FU090900102
CR382136
Ascomycota
Debaryomyces hansenii CBS767
405202
405291
+
Tyr
GTA
[ENA]
¡û
>FU090900111
CR382138
Ascomycota
Debaryomyces hansenii CBS767
530566
530655
+
Tyr
GTA
[ENA]
¡û
>FU090900119
CR382138
Ascomycota
Debaryomyces hansenii CBS767
446675
446586
-
Tyr
GTA
[ENA]
¡û
>FU090900130
CR382139
Ascomycota
Debaryomyces hansenii CBS767
787062
786973
-
Tyr
GTA
[ENA]
¡û
>FU090900165
CM000437
Ascomycota
Pichia stipitis CBS 6054
1993186
1993090
-
Tyr
GTA
[ENA]
¡û
>FU090900168
CM000437
Ascomycota
Pichia stipitis CBS 6054
651135
651045
-
Tyr
GTA
[ENA]
¡û
>FG091900219
CP000496
Ascomycota
Pichia stipitis CBS 6054
2260030
2259940
-
Tyr
GTA
[ENA]
¡û
>FG091900222
CP000502
Ascomycota
Pichia stipitis CBS 6054
861484
861394
-
Tyr
GTA
[ENA]
¡û
>FG091900319
CR382136
Ascomycota
Debaryomyces hansenii CBS767
1428515
1428426
-
Tyr
GTA
[ENA]
¡û
Identical group No.340229 (2 seq.)
>FU090900117
CR382138
Ascomycota
Debaryomyces hansenii CBS767
1165747
1165658
-
Tyr
GTA
[ENA]
¡û
>FU090900173
CP000498
Ascomycota
Pichia stipitis CBS 6054
128350
128440
+
Tyr
GTA
[ENA]
¡û
Identical group No.340249 (5 seq.)
>FG092510001
CU329670
Ascomycota
Schizosaccharomyces_pombe_972h-
1746464
1746547
+
Tyr
GTA
[ENA]
¡û
>FG092910007
CU329670
Ascomycota
Schizosaccharomyces_pombe_972h-
1746464
1746547
+
Tyr
GTA
[ENA]
¡û
>FG090800089
CU329671
Ascomycota
Schizosaccharomyces_pombe_972h-
1598511
1598594
+
Tyr
GTA
[ENA]
¡û
>FG090800091
CU329671
Ascomycota
Schizosaccharomyces_pombe_972h-
1643849
1643932
+
Tyr
GTA
[ENA]
¡û
>FG090800093
CU329671
Ascomycota
Schizosaccharomyces_pombe_972h-
3814558
3814641
+
Tyr
GTA
[ENA]
¡û
Identical group No.735084 (1 seq.)
>FG090800070
AL590448
Microsporidia
Encephalitozoon_cuniculi_GB-M1
107482
107399
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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