This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Anticodon = GTC
HIT:
11 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.641865 (1 seq.)
>FG090100363
AL590443
Microsporidia
Encephalitozoon_cuniculi_GB-M1
44699
44627
-
Asp
GTC
[ENA]
¡û
Identical group No.659359 (11 seq.)
>WENV182597850
OJJC01001886
[OJJC] metagenome; faeces
567
496
-
Asp
GTC
[ENA]
¢þ
>WENV182629525
OJKS01029915
[OJKS] metagenome; surface
127
198
+
Asp
GTC
[ENA]
¢þ
>FG090100073
CR380947
Ascomycota
Candida glabrata CBS 138 CBS138
392339
392268
-
Asp
GTC
[ENA]
¡û
>FG090100083
CR380949
Ascomycota
Candida glabrata CBS 138 CBS138
370244
370315
+
Asp
GTC
[ENA]
¡û
>FG090100107
CR380951
Ascomycota
Candida glabrata CBS 138 CBS138
455162
455233
+
Asp
GTC
[ENA]
¡û
>FG090100124
CR380953
Ascomycota
Candida glabrata CBS 138 CBS138
408152
408223
+
Asp
GTC
[ENA]
¡û
>FG090100131
CR380954
Ascomycota
Candida glabrata CBS 138 CBS138
181552
181623
+
Asp
GTC
[ENA]
¡û
>FG090100159
CR380955
Ascomycota
Candida glabrata CBS 138 CBS138
711183
711112
-
Asp
GTC
[ENA]
¡û
>FG090100177
CR380956
Ascomycota
Candida glabrata CBS 138 CBS138
15423
15352
-
Asp
GTC
[ENA]
¡û
>FG090100192
CR380957
Ascomycota
Candida glabrata CBS 138 CBS138
66139
66068
-
Asp
GTC
[ENA]
¡û
>FG090100228
CR380959
Ascomycota
Candida glabrata CBS 138 CBS138
549163
549092
-
Asp
GTC
[ENA]
¡û
Identical group No.659367 (7 seq.)
>FU090900392
AE017342
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
147738
147637
-
Asp
GTC
[ENA]
¡û
>FU090900393
AE017342
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
232685
232586
-
Asp
GTC
[ENA]
¡û
>FU090900405
AE017345
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
489253
489346
+
Asp
GTC
[ENA]
¡û
>FU090900408
AE017345
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
1177766
1177862
+
Asp
GTC
[ENA]
¡û
>FU090900417
AE017348
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
5774
5870
+
Asp
GTC
[ENA]
¡û
>FU090900430
AE017351
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
975753
975671
-
Asp
GTC
[ENA]
¡û
>FU090900431
AE017352
Basidiomycota
Cryptococcus neoformans var. neoformans JEC21
57219
57123
-
Asp
GTC
[ENA]
¡û
Identical group No.675913 (10 seq.)
>FG090100011
AE016814
Ascomycota
Ashbya gossypii ATCC 10895
332412
332340
-
Asp
GTC
[ENA]
¡û
>FG090100018
AE016815
Ascomycota
Ashbya gossypii ATCC 10895
209767
209695
-
Asp
GTC
[ENA]
¡û
>FG090100020
AE016816
Ascomycota
Ashbya gossypii ATCC 10895
52177
52248
+
Asp
GTC
[ENA]
¡û
>FG090100035
AE016818
Ascomycota
Ashbya gossypii ATCC 10895
50061
50132
+
Asp
GTC
[ENA]
¡û
>FG090100037
AE016818
Ascomycota
Ashbya gossypii ATCC 10895
59900
59971
+
Asp
GTC
[ENA]
¡û
>FG090100065
AE016819
Ascomycota
Ashbya gossypii ATCC 10895
413480
413409
-
Asp
GTC
[ENA]
¡û
>FG091100007
AE016814
Ascomycota
Ashbya gossypii ATCC 10895
674189
674118
-
Asp
GTC
[ENA]
¡û
>FG091100032
AE016817
Ascomycota
Ashbya gossypii ATCC 10895
681350
681279
-
Asp
GTC
[ENA]
¡û
>FG091100055
AE016819
Ascomycota
Ashbya gossypii ATCC 10895
701559
701486
-
Asp
GTC
[ENA]
¡û
>FG091100067
AE016820
Ascomycota
Ashbya gossypii ATCC 10895
627496
627423
-
Asp
GTC
[ENA]
¡û
Identical group No.675917 (8 seq.)
>FG090100516
CM000437
Ascomycota
Pichia stipitis CBS 6054
2104052
2104123
+
Asp
GTC
[ENA]
¡û
>FG090100544
CP000496
Ascomycota
Pichia stipitis CBS 6054
194946
194875
-
Asp
GTC
[ENA]
¡û
>FG090100558
CP000498
Ascomycota
Pichia stipitis CBS 6054
872225
872154
-
Asp
GTC
[ENA]
¡û
>FG090100562
CP000498
Ascomycota
Pichia stipitis CBS 6054
274228
274155
-
Asp
GTC
[ENA]
¡û
>FG090100564
CP000498
Ascomycota
Pichia stipitis CBS 6054
235625
235554
-
Asp
GTC
[ENA]
¡û
>FG090100599
CP000501
Ascomycota
Pichia stipitis CBS 6054
142994
142923
-
Asp
GTC
[ENA]
¡û
>FG091100084
CP000496
Ascomycota
Pichia stipitis CBS 6054
844312
844241
-
Asp
GTC
[ENA]
¡û
>FG091100091
CP000497
Ascomycota
Pichia stipitis CBS 6054
1688891
1688962
+
Asp
GTC
[ENA]
¡û
Identical group No.684007 (33 seq.)
>WENV180295806
OBIZ01340097
[OBIZ] soil metagenome; soil
77
150
+
Asp
GTC
[ENA]
¢þ
>WENV183751397
PPYE01011145
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
1
72
+
Asp
GTC
[ENA]
¢þ
>WENV170659247
JXWR01002492
[JXWR] soil metagenome; rice field; ambient CO2
4908
4981
+
Asp
GTC
[ENA]
¢þ
>WENV170659291
JXWR01003031
[JXWR] soil metagenome; rice field; ambient CO2
14072
14143
+
Asp
GTC
[ENA]
¢þ
>WENV170659292
JXWR01003078
[JXWR] soil metagenome; rice field; ambient CO2
2152
2079
-
Asp
GTC
[ENA]
¢þ
>WENV170659293
JXWR01003079
[JXWR] soil metagenome; rice field; ambient CO2
2126
2055
-
Asp
GTC
[ENA]
¢þ
>WENV170659443
JXWR01005660
[JXWR] soil metagenome; rice field; ambient CO2
3521
3592
+
Asp
GTC
[ENA]
¢þ
>WENV170659496
JXWR01007164
[JXWR] soil metagenome; rice field; ambient CO2
210
283
+
Asp
GTC
[ENA]
¢þ
>WENV170659529
JXWR01008428
[JXWR] soil metagenome; rice field; ambient CO2
2114
2041
-
Asp
GTC
[ENA]
¢þ
>WENV170659638
JXWR01018531
[JXWR] soil metagenome; rice field; ambient CO2
2499
2426
-
Asp
GTC
[ENA]
¢þ
>WENV170662157
JXWV01214303
[JXWV] soil metagenome; rice field; organic FYM Plot
409
336
-
Asp
GTC
[ENA]
¢þ
>WENV170668475
LAFK01000009
[LAFK] hot springs metagenome; hot springs water enriched for viruses sample NL10_1006_vDNA_WGA
112
185
+
Asp
GTC
[ENA]
¢þ
>WENV170668482
LAFL01000542
[LAFL] hot springs metagenome; hot springs water enriched for viruses sample NL10_1002_vDNA_WGA
3
74
+
Asp
GTC
[ENA]
¢þ
>W1910872238
NDFM01000085
Actinomycetota
Rothia sp. Olga [NDFM]
141
68
-
Asp
GTC
[ENA]
¡û
>SC0100010
NC_001134
Ascomycota
Saccharomyces cerevisiae S288c
405953
406026
+
Asp
GTC
[ENA]
¡û
>SC0100029
NC_001136
Ascomycota
Saccharomyces cerevisiae S288c
568961
569034
+
Asp
GTC
[ENA]
¡û
>SC0100073
NC_001139
Ascomycota
Saccharomyces cerevisiae S288c
531613
531686
+
Asp
GTC
[ENA]
¡û
>SC0100090
NC_001139
Ascomycota
Saccharomyces cerevisiae S288c
544653
544580
-
Asp
GTC
[ENA]
¡û
>SC0100110
NC_001141
Ascomycota
Saccharomyces cerevisiae S288c
336417
336346
-
Asp
GTC
[ENA]
¡û
>SC0100111
NC_001141
Ascomycota
Saccharomyces cerevisiae S288c
324373
324300
-
Asp
GTC
[ENA]
¡û
>SC0100113
NC_001142
Ascomycota
Saccharomyces cerevisiae S288c
204731
204802
+
Asp
GTC
[ENA]
¡û
>SC0100116
NC_001142
Ascomycota
Saccharomyces cerevisiae S288c
355450
355523
+
Asp
GTC
[ENA]
¡û
>SC0100122
NC_001142
Ascomycota
Saccharomyces cerevisiae S288c
541501
541572
+
Asp
GTC
[ENA]
¡û
>SC0100129
NC_001142
Ascomycota
Saccharomyces cerevisiae S288c
374491
374418
-
Asp
GTC
[ENA]
¡û
>SC0100140
NC_001143
Ascomycota
Saccharomyces cerevisiae S288c
513046
512973
-
Asp
GTC
[ENA]
¡û
>SC0100147
NC_001144
Ascomycota
Saccharomyces cerevisiae S288c
427133
427204
+
Asp
GTC
[ENA]
¡û
>SC0100149
NC_001144
Ascomycota
Saccharomyces cerevisiae S288c
793918
793989
+
Asp
GTC
[ENA]
¡û
>SC0100162
NC_001145
Ascomycota
Saccharomyces cerevisiae S288c
463553
463624
+
Asp
GTC
[ENA]
¡û
>SC0100188
NC_001147
Ascomycota
Saccharomyces cerevisiae S288c
571959
572030
+
Asp
GTC
[ENA]
¡û
>W1610134722
FABQ01001032
Bacillota
Clostridioides difficile [FABQ]
102
173
+
Asp
GTC
[ENA]
¡û
>W1610135845
FACE01003731
Bacillota
Clostridioides difficile [FACE]
149
76
-
Asp
GTC
[ENA]
¡û
>W1710136389
FABQ01001032
Bacillota
Clostridioides difficile [FABQ]
102
173
+
Asp
GTC
[ENA]
¡û
>W1710137512
FACE01003731
Bacillota
Clostridioides difficile [FACE]
149
76
-
Asp
GTC
[ENA]
¡û
Identical group No.687818 (27 seq.)
>FU090900213
CR382128
Ascomycota
Yarrowia lipolytica CLIB122
1337498
1337583
+
Asp
GTC
[ENA]
¡û
>FU090900218
CR382128
Ascomycota
Yarrowia lipolytica CLIB122
2299473
2299386
-
Asp
GTC
[ENA]
¡û
>FU090900221
CR382128
Ascomycota
Yarrowia lipolytica CLIB122
1608494
1608407
-
Asp
GTC
[ENA]
¡û
>FU090900224
CR382128
Ascomycota
Yarrowia lipolytica CLIB122
1254668
1254582
-
Asp
GTC
[ENA]
¡û
>FU090900232
CR382129
Ascomycota
Yarrowia lipolytica CLIB122
1163356
1163443
+
Asp
GTC
[ENA]
¡û
>FU090900242
CR382129
Ascomycota
Yarrowia lipolytica CLIB122
2727768
2727853
+
Asp
GTC
[ENA]
¡û
>FU090900254
CR382129
Ascomycota
Yarrowia lipolytica CLIB122
894370
894283
-
Asp
GTC
[ENA]
¡û
>FU090900266
CR382130
Ascomycota
Yarrowia lipolytica CLIB122
1289703
1289788
+
Asp
GTC
[ENA]
¡û
>FU090900269
CR382130
Ascomycota
Yarrowia lipolytica CLIB122
1744095
1744182
+
Asp
GTC
[ENA]
¡û
>FU090900274
CR382130
Ascomycota
Yarrowia lipolytica CLIB122
1303221
1303136
-
Asp
GTC
[ENA]
¡û
>FU090900276
CR382130
Ascomycota
Yarrowia lipolytica CLIB122
1030813
1030729
-
Asp
GTC
[ENA]
¡û
>FU090900285
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
1018577
1018664
+
Asp
GTC
[ENA]
¡û
>FU090900290
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
2041863
2041949
+
Asp
GTC
[ENA]
¡û
>FU090900303
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
3551576
3551663
+
Asp
GTC
[ENA]
¡û
>FU090900304
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
3585610
3585695
+
Asp
GTC
[ENA]
¡û
>FU090900309
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
2368376
2368290
-
Asp
GTC
[ENA]
¡û
>FU090900318
CR382131
Ascomycota
Yarrowia lipolytica CLIB122
956257
956167
-
Asp
GTC
[ENA]
¡û
>FG091900239
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
1175404
1175490
+
Asp
GTC
[ENA]
¡û
>FG091900247
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
1419131
1419218
+
Asp
GTC
[ENA]
¡û
>FG091900260
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
1673541
1673454
-
Asp
GTC
[ENA]
¡û
>FG091900262
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
1457539
1457452
-
Asp
GTC
[ENA]
¡û
>FG091900265
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
1385608
1385521
-
Asp
GTC
[ENA]
¡û
>FG091900288
CR382132
Ascomycota
Yarrowia lipolytica CLIB122
2665039
2665126
+
Asp
GTC
[ENA]
¡û
>FG091900299
CR382132
Ascomycota
Yarrowia lipolytica CLIB122
3703817
3703730
-
Asp
GTC
[ENA]
¡û
>FG091900306
CR382132
Ascomycota
Yarrowia lipolytica CLIB122
3338138
3338051
-
Asp
GTC
[ENA]
¡û
>FG091900309
CR382132
Ascomycota
Yarrowia lipolytica CLIB122
3165586
3165500
-
Asp
GTC
[ENA]
¡û
>FG091900310
CR382132
Ascomycota
Yarrowia lipolytica CLIB122
2246854
2246768
-
Asp
GTC
[ENA]
¡û
Identical group No.706730 (8 seq.)
>FG090100433
CR382122
Ascomycota
Kluyveromyces lactis NRRL Y-1140
605839
605768
-
Asp
GTC
[ENA]
¡û
>FG090100434
CR382122
Ascomycota
Kluyveromyces lactis NRRL Y-1140
555075
555004
-
Asp
GTC
[ENA]
¡û
>FG090100436
CR382122
Ascomycota
Kluyveromyces lactis NRRL Y-1140
537400
537327
-
Asp
GTC
[ENA]
¡û
>FG090100442
CR382124
Ascomycota
Kluyveromyces lactis NRRL Y-1140
403068
403139
+
Asp
GTC
[ENA]
¡û
>FG090100447
CR382124
Ascomycota
Kluyveromyces lactis NRRL Y-1140
1215537
1215610
+
Asp
GTC
[ENA]
¡û
>FG090100466
CR382125
Ascomycota
Kluyveromyces lactis NRRL Y-1140
1062834
1062905
+
Asp
GTC
[ENA]
¡û
>FG090100499
CR382126
Ascomycota
Kluyveromyces lactis NRRL Y-1140
2001543
2001472
-
Asp
GTC
[ENA]
¡û
>FG090100504
CR382126
Ascomycota
Kluyveromyces lactis NRRL Y-1140
393978
393907
-
Asp
GTC
[ENA]
¡û
Identical group No.706758 (9 seq.)
>FG090100259
CR382136
Ascomycota
Debaryomyces hansenii CBS767
177642
177714
+
Asp
GTC
[ENA]
¡û
>FG090100272
CR382137
Ascomycota
Debaryomyces hansenii CBS767
240017
240089
+
Asp
GTC
[ENA]
¡û
>FG090100305
CR382137
Ascomycota
Debaryomyces hansenii CBS767
270655
270583
-
Asp
GTC
[ENA]
¡û
>FG090100309
CR382137
Ascomycota
Debaryomyces hansenii CBS767
210793
210722
-
Asp
GTC
[ENA]
¡û
>FG090100332
CR382139
Ascomycota
Debaryomyces hansenii CBS767
705477
705548
+
Asp
GTC
[ENA]
¡û
>FG090100333
CR382139
Ascomycota
Debaryomyces hansenii CBS767
933914
933986
+
Asp
GTC
[ENA]
¡û
>FG090100341
CR382139
Ascomycota
Debaryomyces hansenii CBS767
1669829
1669901
+
Asp
GTC
[ENA]
¡û
>FG091100186
CR382135
Ascomycota
Debaryomyces hansenii CBS767
596013
595941
-
Asp
GTC
[ENA]
¡û
>FG091100192
CR382136
Ascomycota
Debaryomyces hansenii CBS767
1511542
1511613
+
Asp
GTC
[ENA]
¡û
Identical group No.752689 (1 seq.)
>FG091900274
CR382127
Ascomycota
Yarrowia lipolytica CLIB122
824055
823970
-
Asp
GTC
[ENA]
¡û
Identical group No.799871 (8 seq.)
>FG090100624
CU329671
Ascomycota
Schizosaccharomyces_pombe_972h-
3939227
3939297
+
Asp
GTC
[ENA]
¡û
>FG090100639
CU329671
Ascomycota
Schizosaccharomyces_pombe_972h-
1602417
1602347
-
Asp
GTC
[ENA]
¡û
>FG090100658
CU329672
Ascomycota
Schizosaccharomyces_pombe_972h-
1068029
1068099
+
Asp
GTC
[ENA]
¡û
>FG090100660
CU329672
Ascomycota
Schizosaccharomyces_pombe_972h-
1092437
1092507
+
Asp
GTC
[ENA]
¡û
>FG090100669
CU329672
Ascomycota
Schizosaccharomyces_pombe_972h-
2139478
2139408
-
Asp
GTC
[ENA]
¡û
>FG090100675
CU329672
Ascomycota
Schizosaccharomyces_pombe_972h-
1106557
1106487
-
Asp
GTC
[ENA]
¡û
>FG092110018
CU329670
Ascomycota
Schizosaccharomyces_pombe_972h-
4532857
4532927
+
Asp
GTC
[ENA]
¡û
>FG092110021
CU329670
Ascomycota
Schizosaccharomyces_pombe_972h-
5232987
5232917
-
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK